Dataset Overview
RBP
HNRNPA0
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR720BPO
Platform
HiSeq
Pubmed ID
32252787
HNRNPA0 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of HNRNPA0
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
15.89
17.48
0.42980
0.00467
0.01017
A1CF
30.66
22.66
-0.51241
4.97919E-08
2.81332E-07
A2M
2149.68
3511.44
0.80878
7.58654E-16
1.16008E-14
A4GALT
0.85
1.42
0.78758
0.00883
0.01790
AAAS
25.65
17.71
-0.60332
3.90914E-08
2.25496E-07
AACS
15.28
16.89
0.21664
0.03100
0.05455
AADAT
4.81
2.67
-0.89454
1.30910E-06
5.92388E-06
AAGAB
8.9
6.17
-0.45714
0.00046
0.00127
AAK1
2.42
2.9
0.58046
0.00016
0.00049
AARS
64.38
126.14
1.03857
4.37987E-24
1.48165E-22
Showing 1 to 10 of 7,967 entries
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Function Analysis of Target Genes of HNRNPA0
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC10
43409599_43409698_43406361_43406533_43410707_43410897
0.00732
-0.2
DataSet_01_433
View details
ABCG5
44041408_44041484_44039698_44040448_44041615_44041728
0.00113
0.123
DataSet_01_433
View details
ACLY
40025726_40025840_40025295_40025378_40027941_40028085
0.00498
-0.062
DataSet_01_433
View details
ACSL4
108934231_108934360_108926364_108926601_108939372_108939425
0.00009
0.083
DataSet_01_433
View details
ACTR1B
98278344_98278409_98275814_98275940_98280305_98280570
0.00432
-0.811
DataSet_01_433
View details
AFMID
76193226_76193439_76187050_76187141_76198579_76198684
0.00268
0.152
DataSet_01_433
View details
AHCTF1
247007096_247007171_247005995_247006078_247012916_247014744
0.00118
-0.381
DataSet_01_433
View details
ALAS1
52232687_52232864_52232109_52232271_52233225_52233456
0.00572
0.08
DataSet_01_433
View details
ALB
74270837_74270890_74270003_74270123_74272345_74272478
0.00000
0.03
DataSet_01_433
View details
ALDH7A1
125900149_125900284_125896774_125896816_125903950_125904048
0.00630
0.045
DataSet_01_433
View details
Showing 1 to 10 of 287 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52603747_52603882_52610424_52610567_52601621_52601752
0.00019
0.558
DataSet_01_433
View details
A2M
9264754_9264807_9264904_9265132_9262909_9262930
0.00000
-0.261
DataSet_01_433
View details
A2M
9229351_9229403_9229411_9229532_9227155_9227379
0.00009
0.102
DataSet_01_433
View details
ABCD4
74759856_74759951_74761850_74761901_74759450_74759572
0.00298
0.341
DataSet_01_433
View details
ABI2
204244930_204245107_204255768_204255866_204231599_204231767
0.00002
-0.276
DataSet_01_433
View details
ACIN1
23550956_23551045_23559730_23559842_23548755_23550018
0.00001
0.245
DataSet_01_433
View details
ACTN4
39200896_39200982_39201915_39202001_39200034_39200116
0.00032
0.038
DataSet_01_433
View details
ACTR1B
98277033_98277109_98278344_98278409_98275814_98275940
0.00000
-0.244
DataSet_01_433
View details
ACTR3
114670748_114670804_114684921_114685032_114647536_114647900
0.00521
0.419
DataSet_01_433
View details
ADAM9
38940486_38940592_38948777_38948865_38940159_38940240
0.00000
0.187
DataSet_01_433
View details
Showing 1 to 10 of 167 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101577064_101577241_101577064_101577156_101578628_101578714
0.00782
-0.176
DataSet_01_433
View details
ALB
74279151_74279307_74279151_74279299_74280751_74281112
0.00000
-0.011
DataSet_01_433
View details
ATAD2B
24008896_24009093_24008911_24009093_24005738_24005898
0.00768
-0.476
DataSet_01_433
View details
C17orf76-AS1
16342640_16343017_16342640_16342728_16343498_16343567
0.00001
0.09
DataSet_01_433
View details
CFB
31912561_31912806_31912561_31912630_31912954_31912963
0.00615
-0.064
DataSet_01_433
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CRK
1339913_1340449_1340083_1340449_1323982_1326944
0.00422
-0.14
DataSet_01_433
View details
DRAM2
111663137_111663315_111663153_111663315_111662498_111662581
0.00027
-0.243
DataSet_01_433
View details
EIF4G2
10823207_10823756_10823595_10823756_10822508_10822634
0.00174
0.073
DataSet_01_433
View details
ENY2
110346552_110346703_110346552_110346631_110348356_110348433
0.00022
-0.09
DataSet_01_433
View details
FKBP10
39974639_39974854_39974639_39974779_39975461_39975651
0.00000
-0.108
DataSet_01_433
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Showing 1 to 10 of 37 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC007319.1
188412209_188412434_188412270_188412434_188411804_188411890
0.00040
0.436
DataSet_01_433
View details
AC007319.1
188412270_188412434_188412307_188412434_188411804_188411890
0.00932
-0.365
DataSet_01_433
View details
ANGPT2
6377384_6377515_6377384_6377512_6378698_6378931
0.00347
0.014
DataSet_01_433
View details
ANKRD13D
67057763_67057917_67057792_67057917_67057548_67057684
0.00803
0.219
DataSet_01_433
View details
APOA2
161193151_161193247_161193151_161193215_161193384_161193418
0.00107
-0.038
DataSet_01_433
View details
APTX
32987541_32987844_32987541_32987729_32989756_32989893
0.00007
-0.396
DataSet_01_433
View details
APTX
32987541_32987844_32987541_32987729_32988080_32988127
0.00244
-0.257
DataSet_01_433
View details
ATP6V1G2-DDX39B
31508258_31508343_31508258_31508311_31509726_31509925
0.00000
-0.386
DataSet_01_433
View details
BCLAF1
136596980_136597646_136596980_136597127_136599002_136599914
0.00257
-0.109
DataSet_01_433
View details
C16orf13
684888_685063_684888_684956_685280_685340
0.00146
0.329
DataSet_01_433
View details
Showing 1 to 10 of 51 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCF3
183905451_183905771_183905451_183905549_183905648_183905771
0.00709
-0.059
DataSet_01_433
View details
ACADVL
7125985_7126556_7125985_7126184_7126451_7126556
0.00001
0.154
DataSet_01_433
View details
ACTB
5567911_5569031_5567911_5568350_5568791_5569031
0.00000
0.016
DataSet_01_433
View details
AKT1
105237081_105238789_105237081_105237184_105238701_105238789
0.00026
0.06
DataSet_01_433
View details
AMT
49457142_49457775_49457142_49457221_49457643_49457775
0.00212
0.149
DataSet_01_433
View details
ANKZF1
220098854_220100034_220098854_220099010_220099547_220100034
0.00813
0.103
DataSet_01_433
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AP1G2
24034814_24035369_24034814_24034910_24035024_24035369
0.00015
-0.051
DataSet_01_433
View details
ATP5D
1244313_1244824_1244313_1244439_1244735_1244824
0.00349
0.162
DataSet_01_433
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CC2D1B
52823452_52824133_52823452_52823570_52824002_52824133
0.00356
-0.195
DataSet_01_433
View details
CD46
207932983_207934791_207932983_207933069_207934593_207934791
0.00209
0.042
DataSet_01_433
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
33148096
A
G
0.00404
SYNC,RBBP4
+,-
FALSE
AluSg
SINE,Alu
chr1
46075188
C
A
0.00199
NASP
+
FALSE
A-rich
SINE,Alu
chr1
87213190
A
C
0.00054
SH3GLB1
+
FALSE
chr1
19586360
T
C
0.00023
MRTO4
+
FALSE
chr1
218617066
A
T
0.00036
TGFB2-OT1,TGFB2
+
FALSE
chr1
1570919
C
T
0.00161
CDK11B
-
FALSE
chr1
116234313
A
G
0.00016
VANGL1
+
FALSE
chr1
144902696
A
T
0.00997
NBPF20,PDE4DIP
+,-
FALSE
chr1
33149496
A
G
0.00662
SYNC,RBBP4
+,-
FALSE
AluSx1
SINE,Alu
chr1
156044222
G
T
0.00758
MEX3A
-
FALSE
(T)n
SINE,Alu
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression