Dataset Overview
RBPCSTF2T
Knock-MethodshRNA
RBP FamilyRRM_1
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR914WQV
PlatformHiSeq
Pubmed ID32252787

CSTF2T - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of CSTF2T
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of CSTF2T


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr5118174735TC0.00046DTWD2-TRUEAluYSINE,Alu
chr11361641CT0.00928TMEM88B+FALSE
chr124798089GA0.00815NIPAL3+FALSE
chr1423795204GT0.00938BCL2L2-PABPN1,PABPN1+FALSE
chr287777087TC0.00737LINC00152+FALSE
chr2025428724AG0.00033GINS1+TRUEAluJbSINE,Alu
chr540852810GT0.00276CARD6+FALSE
chr131905887AC0.00221SERINC2+FALSE
chr1144931727GA0.00211NBPF20,PDE4DIP+,-FALSE
chr310255002CG0.00043IRAK2+FALSE
chr177166017GA0.00146.FALSE
chr133148214AG0.00295SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr1179044206AG0.00015FAM20B+TRUEAluSxSINE,Alu
chr146075724AG1.14407E-05NASP+TRUEAluSx4SINE,Alu
chr11469787CT0.00010ATAD3A+FALSE
chr587566384AT0.00584TMEM161B-AS1+FALSE
chr5125961611AG0.00113PHAX+TRUEAluSz6SINE,Alu
chr3197612334AG0.00070.FALSEAluSpSINE,Alu
chr323962339TA0.00925RPL15+FALSE
chr121086062GT0.00847RAD52-FALSEL2SINE,Alu
chr1933882222GA0.00236PEPD-FALSE
chrX77083007TC0.00371MAGT1-TRUEAluSgSINE,Alu
chr145975345AG0.00227MMACHC+TRUEAluSg7SINE,Alu
chr3195415462GA0.00140LINC00969,SDHAP2+FALSE
chr626095454AG0.00284HFE+TRUEAluYSINE,Alu
chr12109039869TC0.00795CORO1C-FALSE
chr1206579936AG0.00747SRGAP2+FALSE
chr1757279264AG0.00793PRR11+TRUEAluSq2SINE,Alu
chr144171143CA0.00118KDM4A-AS1,KDM4A+,-FALSE
chr237331119TC0.00758.FALSEAluSx1SINE,Alu
chr1150937963AG0.00658CERS2-FALSEG-richSINE,Alu
chr162553869AT0.00089TBC1D24+FALSE
chr6150046495TC0.00076NUP43-TRUEAluSq2SINE,Alu
chr153359182AG0.00321ZYG11A+TRUEAluSxSINE,Alu
chr2131906031CT0.00439PLEKHB2+FALSE
chr514696117TC0.00807OTULIN+FALSE
chrX150573750AT0.00887VMA21+FALSE
chr352289298GT0.00059WDR82-FALSE
chr153289852AG0.00228ZYG11B+TRUEFRAMSINE,Alu
chr1204525672AG0.00375MDM4+TRUEAluSzSINE,Alu
chr1205686522GT0.00427NUCKS1-FALSE
chr1937236432TC0.00333ZNF850-TRUEAluSpSINE,Alu
chr56668842CT4.46208E-05SRD5A1+FALSE
chr77283569GA0.00032C1GALT1+FALSE(AT)nSINE,Alu
chr417804785TC0.00273DCAF16-TRUEAluSxSINE,Alu
chr119542310TC0.00582LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr766007124TC0.00158GS1-124K5.11-TRUEAluJoSINE,Alu
chr315114288TC7.51597E-05RBSN-TRUEAluYSINE,Alu
chr1179044181AG0.00790FAM20B+TRUEAluSxSINE,Alu
chr574072638GA0.00431NSA2+FALSE
chr1229586611TC0.00794NUP133-TRUEAluSzSINE,Alu
chr11251841TC0.00915CPSF3L-TRUEAluSq2SINE,Alu
chr8133859871TA0.00027PHF20L1+FALSE
chr1145284175GC0.00562NBPF20,NOTCH2NL+FALSE
chr16475348CA4.73725E-05HES2-FALSETigger1SINE,Alu
chrX77083952TC0.00045MAGT1-TRUEAluSzSINE,Alu
chr139951484CA0.00592MACF1+FALSE
chr128825781AG0.00166PHACTR4+TRUEAluSpSINE,Alu
chr124865333AG0.00087.FALSEFLAM_ASINE,Alu
chr642857031AG0.00022RPL7L1+TRUEAluSpSINE,Alu
chr1179044181AG0.00660FAM20B+TRUEAluSxSINE,Alu
chr119543465TC0.00427LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr1625269014GC0.00235.FALSE
chr1179327011AG0.00930SOAT1+TRUE
chr193827995CT0.00714DR1+FALSE
chr224223265AG0.00417UBXN2A+TRUEAluScSINE,Alu
chr127877418GA0.00347AHDC1-FALSE
chr126128521AG0.00251SEPN1+TRUEAluJbSINE,Alu
chr167874849TC7.36358E-05SERBP1-TRUEAluSxSINE,Alu
chr111782935AG0.00067.FALSEAluSxSINE,Alu
chr146076529AG0.00336NASP+TRUEAluSxSINE,Alu
chr1610624905TC1.13117E-09EMP2-FALSEAluSx3SINE,Alu
chr1117618067CT0.00118TTF2+FALSE
chr274375276AC0.00328BOLA3-AS1+FALSE
chr16283260TC0.00402ICMT-TRUEAluSx3SINE,Alu
chr116254872CA4.87895E-08SPEN+FALSE
chr598109389TC0.00234RGMB+FALSE
chr147142538GA7.23026E-06EFCAB14-AS1,EFCAB14+,-FALSE
chr116933623GA0.00789NBPF1-FALSEGA-richSINE,Alu
chr155319888TG0.00000DHCR24-FALSE
chr133148696AG0.00363SYNC,RBBP4+,-FALSEAluScSINE,Alu
chr1373651653GT0.00532KLF5+FALSE
chr1100657416CT0.00058DBT-FALSEAluJbSINE,Alu
chr120510981GC0.00197UBXN10-AS1-FALSE
chr110520154TC0.00380.FALSEAluSxSINE,Alu
chr1179044239AG0.00143FAM20B+TRUEAluSxSINE,Alu
chr1179326847AG0.00031SOAT1+TRUEAluJoSINE,Alu
chr2206981487TC0.00281.FALSEAluSgSINE,Alu
chr2018468511TC0.00129RBBP9-TRUEAluSz6SINE,Alu
chr1161559466CA0.00491FCGR2C+FALSE
chr164097432CT0.00157PGM1+FALSE
chr275787917GC0.00766EVA1A-FALSE
chr1957816349AG8.96695E-06.FALSEAluYSINE,Alu
chr1174983207TG0.00681MRPS14-FALSE
chr178142901TC0.00332ZZZ3-TRUEAluSxSINE,Alu
chr1913884096AG1.54361E-06MRI1+TRUEAluSzSINE,Alu
chr115993699CA0.00011.FALSEAluSx4SINE,Alu
chr311596302TC0.00110ATG7+FALSE
chr111846092GT0.00877C1orf167,MTHFR+,-FALSE
chr126144435CG0.00131SEPN1+FALSE
chr2152314385GA0.00040RIF1+FALSE
chr1120611964GC0.00130NOTCH2-FALSE
chr2178406767AT0.00416AGPS+FALSE
chr1121133995GC0.00575SRGAP2-AS1,SRGAP2B,SRGAP2C+,-FALSEL1MB4SINE,Alu
chr630692305AG0.00500.FALSEL2aSINE,Alu
chr1145513017AG0.00037NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr1929703961AC0.00226UQCRFS1-FALSE
chr2025428669AG0.00023GINS1+TRUEAluJbSINE,Alu
chr342599091GA0.00196SEC22C-FALSE
chr12120899168AG6.24570E-05GATC+TRUEAluJrSINE,Alu
chr5149823795AT0.00722RPS14-FALSE
chr224494638TG0.00507ITSN2-FALSE(TATCCT)nSINE,Alu
chr1145293059AG0.00063NBPF20+FALSE
chr119586455AG0.00772MRTO4+TRUEAluSzSINE,Alu
chr285554792CA0.00634TGOLN2-FALSE
chr2191745643AC0.00011GLS+FALSE(GCA)nSINE,Alu
chr437953902TC0.00109TBC1D1+FALSE
chr1788840TC0.00299LINC01128+FALSE
chr72274221TC0.00579MRM2-TRUEAluJrSINE,Alu
chr136770065CT0.00131THRAP3+FALSE(T)nSINE,Alu
chr1757281021AG9.11421E-05PRR11+TRUEAluSzSINE,Alu
chr1110170896TC0.00140AMPD2+FALSE
chr1220231455TC0.00274RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr116203172AG8.98827E-07SPEN+FALSE
chr1249075983CG0.00321KANSL2-FALSE
chr19740895AT0.00136PIK3CD,PIK3CD-AS2+,-FALSEMLT1F1SINE,Alu
chr163009329TG0.00155DOCK7-FALSE
chr1761502458TA0.00317TANC2+FALSE
chr167896040GA1.31286E-05SERBP1-FALSE
chr310168802AG6.92223E-05BRK1+FALSE
chr399517485CA0.00088MIR548G-FALSE(TG)nSINE,Alu
chr261416411TG0.00146USP34-FALSEAluSc8SINE,Alu
chr126801731GT0.00325HMGN2+FALSE(T)nSINE,Alu
chr3195243024CA0.00729PPP1R2-FALSE
chr124022910GA0.00702RPL11+FALSE
chr167874697TC0.00186SERBP1-TRUEAluSx3SINE,Alu
chr271376999GA0.00546MPHOSPH10+FALSE
chr167874697TC4.44446E-05SERBP1-TRUEAluSx3SINE,Alu
chr3185826740TG0.00041ETV5-FALSE
chr6158613390TC0.00416GTF2H5+FALSE
chr3178741082AC5.87013E-06ZMAT3-FALSE
chr126188238GA0.00148PAQR7-FALSEAluSpSINE,Alu
chr1942376711AG5.78075E-06.FALSEAluSpSINE,Alu
chr1148004422TA0.00017NBPF8-FALSE
chr135251229GA0.00516GJB3+FALSE
chr116889663AG0.00392NBPF1-FALSE
chr1298943103AG0.00528TMPO+TRUEAluSzSINE,Alu
chr116890639CT8.47214E-05NBPF1-FALSE
chr19645101CT0.00726.FALSE(ATATTC)nSINE,Alu
chr147844500TG0.00596CMPK1+FALSE
chr1982994TC0.00432AGRN+FALSE
chr2203922075AG0.00058NBEAL1+FALSE
chr6158093827CT0.00201ZDHHC14+FALSE
chr165694080CT0.00442AK4+FALSE(TCCC)nSINE,Alu
chr1110207639TA0.00080GSTM4+FALSE
chr1155853061AG0.00146SYT11+TRUEAluJbSINE,Alu
chr1145283733AG0.00458NBPF20,NOTCH2NL+FALSE
chr1155851620AG0.00066SYT11+TRUEAluSq2SINE,Alu
chr127992825GA0.00192IFI6-FALSE
chr1180943529CT0.00297STX6-FALSE
chr1666923452AG0.00065PDP2+TRUEAluSzSINE,Alu
chr110520331CT2.36721E-05.FALSEAluSx1SINE,Alu
chr337407769AT0.00406GOLGA4+FALSE
chr11677253TC0.00145SLC35E2-FALSE
chr2176042865GT0.00887ATP5G3-FALSE
chr565452100GT0.00600SREK1+FALSE(TTTTTG)nSINE,Alu
chr1204521512AG7.69882E-05MDM4+TRUEAluSgSINE,Alu
chr1207942509AG0.00177CD46+TRUEAluSg4SINE,Alu
chr1773886219TC8.52474E-05TRIM65-TRUEFRAMSINE,Alu
chrM10307AC0.00046.FALSE
chr1212273639CT0.00710DTL+FALSE
chr3185009713GT0.00106MAP3K13+FALSE
chr2178129405CT0.00295NFE2L2-FALSE(CGG)nSINE,Alu
chr5156905300AC0.00870ADAM19-FALSEMER92BSINE,Alu
chr1182360928AC0.00635GLUL-FALSE
chr145975331AG0.00081MMACHC+TRUEAluSg7SINE,Alu
chr362189314CT0.00018PTPRG+FALSE
chr1204521631AG0.00024MDM4+TRUEAluSgSINE,Alu
chr19161142TC0.00160.FALSEAluSxSINE,Alu
chr224223159AG0.00717UBXN2A+TRUEAluScSINE,Alu
chr123636452AG0.00294HNRNPR-FALSE
chr1741133090AT0.00148RUNDC1+FALSE
chr19160976TC0.00015.FALSEAluJbSINE,Alu
chr1913884084AG0.00843MRI1+TRUEAluSzSINE,Alu
chr652226984GA0.00127PAQR8+FALSE(GCTCGG)nSINE,Alu
chr119543247TC4.83051E-05LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr2112252630AC0.00040MIR4435-2HG-FALSE
chr274333231CT0.00073TET3+FALSE
chr564097145CG0.00361CWC27+FALSE
chr124286327GA0.00053PNRC2+FALSE
chr827661037AT0.00314ESCO2+FALSEA-richSINE,Alu
chr495586224AG0.00053PDLIM5+FALSE
chr2188385337CT0.00210TFPI-FALSEL1MC3SINE,Alu
chrX119572534CA0.00387LAMP2-FALSE
chr572801329TA0.00073BTF3+FALSE
chr417629377AG0.00890.FALSEAluSx3SINE,Alu
chr126611197CT0.00814UBXN11-FALSE
chr2102484205TA0.00434MAP4K4+FALSE
chr5141691252TC0.00596SPRY4-FALSE
chr899053985TG4.76792E-05RPL30-FALSE
chr116893686GC0.00171NBPF1-FALSE
chr642048128GT0.00604TAF8+FALSEAluSq2SINE,Alu
chr145975358AG0.00089MMACHC+TRUEAluSg7SINE,Alu
chr133149486AG0.00874SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr144423703CT1.17684E-14IPO13+FALSE
chr1138156GT0.00413LOC729737-FALSE
chr29629290TG0.00180ADAM17-FALSE(TGT)nSINE,Alu
chr111150682CT3.65592E-05EXOSC10-FALSE
chr118707397TA0.00046RPL27A+FALSE
chr7197428GA3.11254E-09FAM20C+FALSE
chr1957804719AC0.00361ZNF460+FALSE
chr2239972080TA0.00136HDAC4-FALSE
chr2136542427TA0.00075UBXN4+FALSEL1ME4bSINE,Alu
chr1145689701AG0.00765NBPF20,NBPF10+TRUEAluJbSINE,Alu
chrX77083641TC0.00055MAGT1-TRUEAluSz6SINE,Alu
chr1203277243GT1.60795E-05BTG2+FALSE
chr891637754AT0.00297TMEM64-FALSE
chr1477787088CT0.00076POMT2-FALSE
chr319992432GT0.00017RAB5A+FALSE
chr1541597437TA0.00217.FALSEAluSz6SINE,Alu
chr110519975TC5.61936E-05.FALSEAluJrSINE,Alu
chr887485483GC0.00554RMDN1-FALSE
chr1913884422AG0.00878MRI1+TRUEAluJrSINE,Alu
chr980888613AG0.00904.FALSEAluSxSINE,Alu
chr16583474TC0.00438NOL9-TRUEAluSqSINE,Alu
chr237331038TC0.00261.FALSEAluSx1SINE,Alu
chr286364710TC0.00056PTCD3+FALSE
chr697592897AC0.00144MMS22L-FALSE
chr1142619487AG0.00511.FALSE
chr1939982631AG0.00316TIMM50+TRUEAluJrSINE,Alu
chrX152916230AC1.62471E-05DUSP9+FALSE
chr120945055CT0.00269CDA+FALSE
chr237506939AG0.00119PRKD3-FALSE
chr133071159AG0.00947ZBTB8A+TRUEAluSx1SINE,Alu
chr42516790GT7.50309E-05RNF4+FALSE
chr3191110320GA0.00419CCDC50+FALSE
chr42931174TC0.00211ADD1+FALSE
chr1204521280AG0.00519MDM4+TRUEAluSpSINE,Alu
chr1120839680AC0.00584FAM72B+FALSE
chr1939440966TC0.00011FBXO17-FALSE
chr1541590287AG0.00568OIP5-AS1+FALSE
chr811172477CT0.00805MTMR9+FALSE
chr1204526795AG0.00199MDM4+TRUEAluSxSINE,Alu
chr137949806GA2.03247E-05ZC3H12A+FALSE
chr1591044378CT0.00453IQGAP1+FALSE
chr579923292CG0.00305DHFR-FALSEAluJrSINE,Alu
chr1045499895GA0.00255ZNF22+FALSE
chr1810691357GA0.00082PIEZO2-FALSE
chr1648387238AG0.00013LONP2,MIR5095+TRUEAluJbSINE,Alu
chr2201774341TC0.00010.FALSEAluSzSINE,Alu
chr1179055020CT0.00738TOR3A+FALSE
chr1939874945TC0.00335SAMD4B+FALSE
chr1778091513GA0.00810GAA+FALSE
chr29629305AT0.00079ADAM17-FALSE
chr1146628742TG0.00102PRKAB2-FALSE
chr1145282799GA0.00081NBPF20,NOTCH2NL+FALSE
chr1757281058AG0.00061PRR11+TRUEAluSzSINE,Alu
chr2152334421AG0.00464.FALSEAluSqSINE,Alu
chr179108421AT7.77428E-05IFI44L+FALSE
chr147844403CA0.00511CMPK1+FALSE
chr473923043TC0.00236COX18-TRUEAluSzSINE,Alu
chr4155457049TA0.00370PLRG1-FALSEL2d2SINE,Alu
chr1205737665GT0.00025RAB29-FALSEAluSq2SINE,Alu
chr349763338TC2.41941E-06IP6K1-FALSE
chr1953914807AG4.44644E-06ZNF765+TRUEAluSpSINE,Alu
chr121545089CT0.00010ECE1-FALSEAluSx1SINE,Alu
chr16282295TC0.00060ICMT-TRUEAluSzSINE,Alu
chr826492397CT0.00709DPYSL2+FALSE
chr2218571431AG0.00158PEX26+TRUEAluSzSINE,Alu
chr1160990906GA0.00270F11R-FALSE
chr1490509582TC0.00017TDP1+FALSE
chr1253435277GT2.75857E-05EIF4B+FALSE
chr1765334856TC1.38810E-06PSMD12-TRUEAluSqSINE,Alu
chr42940485TC2.93326E-08NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu

Differential Expression Gene Analysis