RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr12	69160574	A	G	0.00891		.	FALSE	AluJb	SINE,Alu
chr1	36533368	A	G	0.00635		.	FALSE	AluSx	SINE,Alu
chr1	160966434	T	C	0.00175	F11R	-	TRUE	AluSg	SINE,Alu
chr5	81571877	C	T	0.00033	RPS23	-	FALSE
chr1	145689717	A	G	7.73781E-05	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr1	144606963	G	T	0.00965	NBPF20	+	FALSE
chr12	125511958	A	G	0.00494	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	32799439	C	T	0.00239	MARCKSL1	-	FALSE
chr5	149363414	A	G	0.00503	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr1	145291108	A	C	0.00827	NBPF20	+	FALSE
chr4	10443061	G	T	0.00057	ZNF518B	-	FALSE
chr3	9829171	G	A	0.00730	TADA3	-	FALSE
chr1	33148214	A	G	0.00295	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr21	44329971	A	G	9.72102E-05		.	FALSE	AluSx3	SINE,Alu
chr5	151041886	T	G	0.00176	SPARC	-	FALSE
chr1	67896025	G	A	5.77574E-06	SERBP1	-	FALSE
chr1	51822219	G	A	0.00017	EPS15	-	FALSE
chr7	29961659	C	G	7.23387E-07	SCRN1	-	FALSE
chr4	26433556	A	C	3.10862E-15	RBPJ	+	FALSE
chr1	27879798	A	G	0.00899	AHDC1	-	FALSE	MIRb	SINE,Alu
chr3	45636335	A	G	0.00262	LIMD1	+	FALSE	(AC)n	SINE,Alu
chr12	7045885	A	C	0.00473	ATN1	+	FALSE	(CAG)n	SINE,Alu
chr2	91843471	C	T	0.00095	LOC654342	-	FALSE
chr21	33032035	T	A	1.90109E-05	SOD1	+	FALSE
chr3	181430146	C	A	0.00256	SOX2-OT,SOX2	+	FALSE
chr3	15113810	T	C	0.00201	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	19543353	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr16	75479484	T	C	1.12347E-07	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr1	193054575	C	G	0.00029	TROVE2	+	FALSE	(ATTTT)n	SINE,Alu
chr1	28661656	A	G	0.00319	MED18	+	TRUE	AluSg	SINE,Alu
chr1	36068281	T	C	0.00201	PSMB2	-	TRUE	AluSc	SINE,Alu
chrX	77083845	T	C	0.00102	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	156692052	T	A	0.00369	ISG20L2	-	FALSE	AluY	SINE,Alu
chr8	94744813	C	T	5.22032E-05	RBM12B	-	FALSE
chr2	31491629	A	G	2.09863E-05		.	FALSE
chr2	86251151	T	C	0.00882		.	FALSE	AluSx	SINE,Alu
chr2	204301754	C	G	0.00012	RAPH1	-	FALSE
chr1	9331101	A	G	0.00072	H6PD	+	FALSE	AluSx	SINE,Alu
chr8	71550832	T	C	0.00234	LACTB2-AS1,LACTB2	+,-	FALSE
chr1	16929327	C	T	5.08143E-05	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr2	206983491	T	C	0.00505		.	FALSE	AluSx	SINE,Alu
chr1	154128837	G	T	0.00032	TPM3	-	FALSE
chr2	37328013	T	C	0.00765		.	FALSE
chr4	119555188	C	A	0.00205	LOC729218	+	FALSE
chr2	61764920	C	A	0.00662	XPO1	-	FALSE
chr1	145273345	T	C	0.00640	NBPF20,NOTCH2NL	+	FALSE
chr1	214524576	T	C	0.00408	PTPN14	-	TRUE	AluSg	SINE,Alu
chr17	42880118	T	C	0.00140	GJC1	-	TRUE	AluJb	SINE,Alu
chr4	153898334	A	G	0.00662	FHDC1	+	FALSE	AluJo	SINE,Alu
chr1	15993714	T	A	0.00066		.	FALSE
chr7	6501833	A	T	0.00032	KDELR2	-	FALSE
chr1	16905837	G	A	0.00029	NBPF1	-	FALSE
chr1	94983203	C	T	0.00686	ABCD3	+	FALSE
chr14	61112736	T	G	0.00418	SIX1	-	FALSE	(T)n	SINE,Alu
chr1	144053662	T	G	0.00173		.	FALSE
chr3	71005566	C	T	0.00209	FOXP1	-	FALSE	(T)n	SINE,Alu
chr20	62598815	C	T	0.00711	ZNF512B	-	FALSE
chr1	144598755	G	A	0.00743	NBPF20	+	FALSE
chr6	26411987	T	C	0.00405	BTN3A1	+	FALSE
chr1	53291434	A	G	0.00545	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	9642827	G	A	0.00985	SLC25A33	+	FALSE
chr1	100550370	T	A	0.00743	SASS6	-	FALSE
chr5	64964314	T	C	0.00208	SGTB	-	TRUE	AluSc	SINE,Alu
chr1	179042701	A	G	0.00132	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	28661657	A	G	0.00011	MED18	+	TRUE	AluSg	SINE,Alu
chr1	33068435	A	G	0.00081	ZBTB8A	+	TRUE	AluY	SINE,Alu
chr1	65898263	A	G	0.00767	LEPR,LEPROT	+	FALSE	MIRc	SINE,Alu
chr12	69237509	A	G	1.55617E-05	MDM2	+	TRUE
chr15	102506389	C	T	0.00153	WASH3P	+	FALSE
chr1	36534934	A	G	0.00464		.	FALSE	AluJo	SINE,Alu
chr1	19543456	T	C	0.00760	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	54871709	T	C	0.00110	SSBP3	-	FALSE
chr6	29910581	C	A	6.62336E-05		.	FALSE
chr2	24225013	A	G	0.00103		.	FALSE	AluSx	SINE,Alu
chr2	99812857	A	G	0.00040	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	169101270	T	G	0.00036	ATP1B1	+	FALSE	(T)n	SINE,Alu
chr1	16891340	T	A	0.00440	NBPF1	-	FALSE
chr2	216300795	C	G	0.00641		.	FALSE
chr1	179084080	T	G	0.00926	ABL2	-	FALSE
chr1	27992799	T	A	0.00014	IFI6	-	FALSE	FAM	SINE,Alu
chr12	9395329	G	A	0.00814	LINC00987	+	FALSE
chr1	9160958	T	C	3.06099E-05		.	FALSE	AluJb	SINE,Alu
chr11	94863488	C	T	0.00615	ENDOD1	+	FALSE
chr2	207942527	A	T	0.00107	KLF7	-	FALSE
chr17	4928967	T	G	0.00921	KIF1C	+	FALSE	AluY	SINE,Alu
chr4	165998226	T	C	0.00754	TMEM192	-	TRUE	AluSx	SINE,Alu
chr5	167898510	C	G	0.00013	WWC1	+	FALSE
chr11	65065251	A	G	0.00580	POLA2	+	TRUE	AluY	SINE,Alu
chr17	65334766	T	C	4.45484E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr3	45722396	A	G	0.00337	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr2	201842323	T	C	0.00254	FAM126B	-	TRUE	AluJb	SINE,Alu
chr2	242122440	C	A	0.00354	PPP1R7	+	FALSE
chr1	158067060	T	A	0.00114	KIRREL	+	FALSE
chr3	20025677	G	T	0.00116	RAB5A,PP2D1	+,-	FALSE
chr5	149823795	A	T	0.00261	RPS14	-	FALSE
chr1	179326278	A	G	0.00379	SOAT1	+	TRUE
chr1	21810903	A	G	0.00154	NBPF3	+	FALSE	L1MC4	SINE,Alu
chr14	50361197	G	T	1.76251E-06	ARF6	+	FALSE
chr6	35259646	G	C	0.00808	ZNF76	+	FALSE
chr1	27205871	G	T	0.00931		.	FALSE
chr1	19542679	T	C	1.36514E-06	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr3	73024350	C	A	0.00109	GXYLT2	+	FALSE
chr1	28836975	A	G	0.00023	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr12	120899168	A	G	6.24570E-05	GATC	+	TRUE	AluJr	SINE,Alu
chr1	70611296	A	T	0.00061	LRRC40	-	FALSE
chr7	17384354	A	G	0.00908	AHR	+	TRUE	AluSx	SINE,Alu
chr12	124146077	A	G	1.08379E-05	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr1	53366576	A	G	0.00484	ECHDC2	-	FALSE	AluJb	SINE,Alu
chr1	3416449	C	A	0.00748	MEGF6	-	FALSE
chr4	6718775	G	T	3.33433E-09	BLOC1S4	+	FALSE
chr1	16954981	C	A	0.00876	CROCCP2	-	FALSE
chr1	154317153	C	T	0.00567	ATP8B2	+	FALSE
chr1	155851620	A	G	0.00066	SYT11	+	TRUE	AluSq2	SINE,Alu
chr1	16893686	G	C	0.00138	NBPF1	-	FALSE
chr2	204300093	A	C	0.00105	RAPH1	-	FALSE	FLAM_C	SINE,Alu
chr2	55462751	T	A	0.00613	RPS27A	+	FALSE
chr6	42855979	A	G	8.12389E-06	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	103333654	A	T	0.00488	MFSD9	-	FALSE	AluYm1	SINE,Alu
chr1	1255401	G	T	0.00216	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr3	24163645	C	G	1.00972E-05	THRB	-	FALSE
chr1	45976723	T	C	0.00366	MMACHC,PRDX1	+,-	FALSE
chr1	109240642	A	C	0.00373	PRPF38B	+	FALSE
chr1	89648082	G	A	0.00074	GBP4	-	FALSE	LTR2B	SINE,Alu
chr1	12072783	C	A	0.00914	MFN2	+	FALSE
chr1	36068325	T	C	0.00065	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	109605647	G	A	0.00019		.	FALSE	AluY	SINE,Alu
chr3	194362721	G	A	5.25740E-07	LSG1	-	FALSE
chr4	68484330	G	A	0.00131	UBA6	-	FALSE
chr17	45761110	G	T	0.00816		.	FALSE
chr1	67874697	T	C	0.00163	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr16	10626615	C	T	0.00489	EMP2	-	FALSE	(T)n	SINE,Alu
chr2	1636938	C	T	0.00072	PXDN	-	FALSE	(T)n	SINE,Alu
chr1	145509569	A	G	0.00777	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	176132119	G	C	0.00134	RFWD2	-	FALSE	L3b	SINE,Alu
chr1	144868170	C	T	0.00415	NBPF20,PDE4DIP	+,-	FALSE
chr1	55316322	A	G	0.00266	DHCR24	-	FALSE
chr1	26449882	A	G	0.00783	PDIK1L	+	FALSE
chr2	206986291	T	C	0.00143		.	FALSE	AluSz	SINE,Alu
chr1	109818270	C	T	0.00996	CELSR2	+	FALSE
chr12	120898728	A	G	0.00947	GATC	+	TRUE	AluY	SINE,Alu
chr1	9160963	T	C	0.00098		.	FALSE	AluJb	SINE,Alu
chr17	73940094	T	C	0.00557	ACOX1	-	TRUE	AluJb	SINE,Alu
chr1	32638775	A	T	0.00949	KPNA6	+	FALSE	(A)n	SINE,Alu
chr1	144931727	G	A	4.04936E-05	NBPF20,PDE4DIP	+,-	FALSE
chr1	20978451	T	C	0.00193	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr1	117945049	G	A	0.00030	MAN1A2	+	FALSE
chr3	13670776	T	C	0.00336	FBLN2	+	FALSE
chr1	16344402	G	A	0.00168	HSPB7	-	FALSE	L3	SINE,Alu
chr1	16575726	T	C	0.00916	FBXO42	-	FALSE
chr1	19586519	A	G	0.00015	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	21766776	G	C	0.00343	NBPF3	+	FALSE
chr10	13320126	T	A	0.00830	PHYH	-	FALSE
chr1	53288870	A	G	3.51337E-08	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr2	47130527	G	A	0.00462	MCFD2	-	FALSE
chr1	76229185	T	A	0.00280	ACADM	+	FALSE
chr19	9672989	T	C	0.00044		.	FALSE	AluSx3	SINE,Alu
chr1	62627128	A	G	0.00087	PATJ	+	TRUE	AluSx	SINE,Alu
chr6	3021465	T	C	0.00029	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr22	18571475	A	G	0.00019	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	36068237	T	C	0.00150	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	10519048	T	C	0.00637		.	FALSE	AluSx3	SINE,Alu
chr4	25278988	T	C	2.09007E-08	PI4K2B	+	FALSE
chr3	156259308	T	C	0.00013	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	36068276	T	C	0.00110	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	137787047	C	T	0.00735	DZIP1L	-	FALSE
chr1	120163247	T	C	0.00365	ZNF697	-	FALSE
chr19	11256725	T	C	0.00096	SPC24	-	TRUE	AluJr4	SINE,Alu
chr1	90152146	C	T	1.61967E-05	LRRC8C	+	FALSE
chr2	120022387	C	T	0.00728	STEAP3	+	FALSE
chr1	32793185	C	T	0.00015	HDAC1	+	FALSE
chr5	180669695	T	C	0.00101	RACK1	-	TRUE	AluSx1	SINE,Alu
chr5	96110544	T	C	0.00295	ERAP1	-	TRUE
chr1	87573325	C	T	0.00121	HS2ST1	+	FALSE	(AT)n	SINE,Alu
chr5	53840199	G	T	0.00857	SNX18	+	FALSE
chr5	40832548	A	T	0.00048	RPL37	-	FALSE
chr17	80347528	T	C	0.00048	OGFOD3	-	TRUE	AluJb	SINE,Alu
chr1	146495576	G	C	0.00107	LOC728989	-	FALSE
chr3	188597556	A	G	0.00309	LPP	+	FALSE
chr1	10516656	C	T	0.00808		.	FALSE
chr1	33148118	A	G	0.00316	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr3	45721989	A	G	0.00713	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	24710405	A	G	0.00246	STPG1	-	FALSE
chr3	170113718	T	C	0.00316	SKIL	+	FALSE
chr1	45975574	A	G	0.00050	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	40539208	A	T	2.90582E-07	PPT1	-	FALSE
chr11	125525572	A	C	0.00016	CHEK1	+	FALSE
chr1	46159823	T	A	0.00474	TMEM69	+	FALSE
chr1	186641127	A	T	0.00546	PTGS2	-	FALSE
chr1	160967856	T	C	0.00100	F11R	-	TRUE	AluSp	SINE,Alu
chr15	41590982	A	G	0.00327	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	28661665	A	G	0.00808	MED18	+	TRUE	AluSg	SINE,Alu
chr2	204162597	A	G	0.00296	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr1	19543457	T	C	0.00101	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	114443474	A	G	9.14620E-06	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	327441	A	G	1.08612E-09		.	FALSE
chr19	58361328	G	C	0.00972	ZNF587	+	FALSE
chr3	48787684	T	C	0.00813	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr2	37330146	C	G	2.68632E-05		.	FALSE
chr8	30536544	T	C	5.33169E-07	GSR	-	TRUE	AluSp	SINE,Alu
chr1	86117191	T	C	0.00987	ZNHIT6	-	TRUE	AluSg	SINE,Alu
chr7	36447346	G	A	0.00419	ANLN	+	FALSE
chr9	89626839	T	G	0.00016	LOC440173	-	FALSE
chr1	148003749	T	C	0.00114	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr3	58306686	A	G	0.00970		.	FALSE	AluSz	SINE,Alu
chr2	65496075	C	T	0.00972	ACTR2	+	FALSE
chr2	224622277	T	C	0.00138	AP1S3	-	TRUE	AluSx1	SINE,Alu
chr12	124146597	A	G	0.00121	GTF2H3	+	TRUE	AluSq2	SINE,Alu
chr1	53289892	A	G	0.00070	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	36067838	T	C	1.55029E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr17	5289028	G	A	0.00849	RABEP1,NUP88	+,-	FALSE
chr4	57327092	A	G	0.00091	PAICS	+	TRUE	AluSx1	SINE,Alu

RBP	XPO5
Knock-Method	shRNA
RBP Family	Xpo1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR778RWJ
Platform	HiSeq
Pubmed ID	32252787

XPO5 - Target Gene Network