Dataset Overview
RBP
XPO5
Knock-Method
shRNA
RBP Family
Xpo1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR778RWJ
Platform
HiSeq
Pubmed ID
32252787
XPO5 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of XPO5
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
15.89
30.15
1.08263
2.00322E-15
2.36141E-14
A1CF
30.66
25.12
-0.21306
0.02020
0.03620
A4GALT
0.85
1.42
0.94395
0.00424
0.00894
AAAS
25.65
21.48
-0.42899
6.52725E-06
2.31319E-05
AADAT
4.81
3.05
-0.64816
0.00013
0.00036
AAGAB
8.9
6.79
-0.37824
0.00984
0.01899
AAK1
2.42
1.64
-0.46073
0.00309
0.00673
AAMDC
23.01
28.25
0.29414
0.02674
0.04636
AAR2
19.98
16.26
-0.30628
0.00070
0.00173
AARS
64.38
122.4
0.93209
1.84286E-18
2.92652E-17
Showing 1 to 10 of 8,292 entries
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Function Analysis of Target Genes of XPO5
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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100
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52623792_52623840_52619601_52619745_52645340_52645435
0.00154
0.075
DataSet_01_438
View details
ABCC2
101576820_101576911_101572774_101572901_101577064_101577241
0.00740
0.132
DataSet_01_438
View details
AFMID
76200623_76200822_76198783_76198832_76200908_76201132
0.00990
0.161
DataSet_01_438
View details
AGPS
178306847_178306963_178305692_178305764_178307134_178307214
0.00272
0.074
DataSet_01_438
View details
AHSG
186336079_186336284_186334975_186335139_186337645_186337729
0.00000
-0.302
DataSet_01_438
View details
AHSG
186336079_186336177_186334975_186335139_186336324_186336426
0.00560
-0.009
DataSet_01_438
View details
AKR1C2
5041391_5041469_5040816_5040939_5042741_5042858
0.00005
-0.096
DataSet_01_438
View details
AL589743.1
19702864_19702990_19680594_19680685_19718325_19718563
0.00958
-0.056
DataSet_01_438
View details
ALDOA
30077196_30077248_30075744_30075826_30078554_30078687
0.00058
0.071
DataSet_01_438
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ALDOA
30077196_30077248_30076059_30076105_30078554_30078687
0.00650
0.015
DataSet_01_438
View details
Showing 1 to 10 of 239 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9264754_9264807_9264904_9265132_9262909_9262930
0.00000
-0.221
DataSet_01_438
View details
ABCC2
101556853_101557088_101560142_101560320_101554169_101554225
0.00134
-0.184
DataSet_01_438
View details
ACP1
272036_272150_272191_272305_271865_271939
0.00032
-0.105
DataSet_01_438
View details
ACSL4
108926364_108926601_108939372_108939425_108925947_108926125
0.00466
0.079
DataSet_01_438
View details
ACTR3
114670748_114670804_114684921_114685032_114647686_114647900
0.00477
0.129
DataSet_01_438
View details
ADAM9
38940486_38940592_38948777_38948865_38940159_38940240
0.00000
0.252
DataSet_01_438
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AFP
74306318_74306530_74309067_74309161_74303890_74304023
0.00020
-0.009
DataSet_01_438
View details
AHSG
186336079_186336280_186336324_186336426_186334975_186335139
0.00000
-0.019
DataSet_01_438
View details
AHSG
186334231_186334316_186337645_186337729_186333473_186333584
0.00000
0.146
DataSet_01_438
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AHSG
186334975_186335164_186337645_186337729_186334231_186334316
0.00000
0.474
DataSet_01_438
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Showing 1 to 10 of 128 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACP1
272036_272116_272036_272065_272191_272305
0.00000
-0.684
DataSet_01_438
View details
AKR1C2
5041391_5042858_5042741_5042858_5040816_5040939
0.00002
-0.186
DataSet_01_438
View details
APEX1
20923384_20923548_20923384_20923487_20923736_20923862
0.00141
-0.077
DataSet_01_438
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BCL2L1
30309457_30310151_30309646_30310151_30252254_30253889
0.00504
-0.068
DataSet_01_438
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CHMP4A
24680616_24680798_24680620_24680798_24679859_24679974
0.00544
0.059
DataSet_01_438
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CPNE1
34218662_34218883_34218822_34218883_34218360_34218412
0.00090
-0.067
DataSet_01_438
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CTNND1
57529268_57529591_57529268_57529518_57558856_57559145
0.00760
-0.201
DataSet_01_438
View details
ENPP3
131995301_131995550_131995301_131995421_131996219_131996329
0.00797
0.136
DataSet_01_438
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FDPS
155287978_155288168_155287978_155288082_155288455_155288554
0.00301
0.028
DataSet_01_438
View details
HNRNPH1
179043869_179043959_179043899_179043959_179043126_179043219
0.00006
0.028
DataSet_01_438
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Showing 1 to 10 of 27 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC040977.1
6915927_6916096_6915927_6916076_6916984_6917062
0.00570
0.049
DataSet_01_438
View details
AC040977.1
6915927_6916080_6915927_6916076_6916984_6917062
0.00627
0.042
DataSet_01_438
View details
ANKRD17
74000833_74000982_74000833_74000979_74005247_74006000
0.00413
-0.172
DataSet_01_438
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APOL1
36650943_36651045_36650982_36651045_36649178_36649265
0.00004
0.054
DataSet_01_438
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ATG9A
220075102_220075311_220075102_220075197_220075432_220075545
0.00013
0.077
DataSet_01_438
View details
AUP1
74754067_74754272_74754067_74754186_74754374_74754490
0.00002
0.064
DataSet_01_438
View details
AUP1
74754067_74754248_74754067_74754186_74754374_74754490
0.00651
0.039
DataSet_01_438
View details
C1orf63
25570040_25570715_25570040_25570124_25571640_25571792
0.00112
0.383
DataSet_01_438
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CTC-554D6.1
112203068_112203279_112203100_112203279_112200317_112200429
0.00103
0.038
DataSet_01_438
View details
DDX41
176943288_176943517_176943288_176943448_176943725_176943836
0.00006
-0.084
DataSet_01_438
View details
Showing 1 to 10 of 49 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCB6
220075102_220075545_220075102_220075197_220075432_220075545
0.00020
0.085
DataSet_01_438
View details
AP1G2
24035024_24035369_24035024_24035101_24035272_24035369
0.00000
0.175
DataSet_01_438
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AP1G2
24031170_24031624_24031170_24031275_24031496_24031624
0.00591
-0.091
DataSet_01_438
View details
APEX1
20923384_20923862_20923384_20923487_20923736_20923862
0.00199
-0.063
DataSet_01_438
View details
APEX1
20923384_20923862_20923384_20923548_20923736_20923862
0.00439
-0.042
DataSet_01_438
View details
ARL6IP4
123465675_123466426_123465675_123465846_123466117_123466426
0.00010
0.36
DataSet_01_438
View details
ATG16L1
234198499_234198999_234198499_234198620_234198893_234198999
0.00974
0.264
DataSet_01_438
View details
AUP1
74755877_74756409_74755877_74756062_74756258_74756409
0.00061
0.092
DataSet_01_438
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BCKDK
31120993_31121445_31120993_31121104_31121397_31121445
0.00184
0.066
DataSet_01_438
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BCL2L1
30309457_30310400_30309457_30310133_30310219_30310400
0.00019
-0.14
DataSet_01_438
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Differential Variants in RNA (DVRs)
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Search:
Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
36533368
A
G
0.00635
.
FALSE
AluSx
SINE,Alu
chr1
160966434
T
C
0.00175
F11R
-
TRUE
AluSg
SINE,Alu
chr1
145689717
A
G
7.73781E-05
NBPF20,NBPF10
+
TRUE
AluJb
SINE,Alu
chr1
144606963
G
T
0.00965
NBPF20
+
FALSE
chr1
32799439
C
T
0.00239
MARCKSL1
-
FALSE
chr1
145291108
A
C
0.00827
NBPF20
+
FALSE
chr1
33148214
A
G
0.00295
SYNC,RBBP4
+,-
FALSE
AluSg
SINE,Alu
chr1
67896025
G
A
5.77574E-06
SERBP1
-
FALSE
chr1
51822219
G
A
0.00017
EPS15
-
FALSE
chr1
27879798
A
G
0.00899
AHDC1
-
FALSE
MIRb
SINE,Alu
Showing 1 to 10 of 211 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression