RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	160659996	G	A	0.00177	LY75-CD302,LY75	-	FALSE
chr3	155658362	C	T	0.00807		.	FALSE	MIR3	SINE,Alu
chr1	16723840	G	A	0.00072	SZRD1	+	FALSE
chr1	16945027	T	C	2.31134E-07	CROCCP2	-	FALSE	L1ME3Cz	SINE,Alu
chr3	57612180	T	C	0.00018	DENND6A,PDE12	+,-	FALSE	AluSp	SINE,Alu
chr1	1431295	T	C	3.55878E-05	ATAD3B	+	FALSE
chrX	54587297	A	G	0.00759	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	27182750	G	C	0.00141		.	FALSE
chr19	13883927	A	G	0.00143	MRI1	+	TRUE	AluSz	SINE,Alu
chr1	22109952	G	A	0.00889		.	FALSE
chrX	3526658	A	T	0.00152	PRKX	-	FALSE	(AC)n	SINE,Alu
chr12	124146073	A	G	0.00085	GTF2H3	+	FALSE	AluSx4	SINE,Alu
chr15	90820073	A	G	0.00012		.	FALSE	AluY	SINE,Alu
chr4	73923056	T	C	0.00077	COX18	-	TRUE	AluSz	SINE,Alu
chr1	179326295	A	G	0.00035	SOAT1	+	TRUE
chr1	145509569	A	G	0.00405	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr20	29631627	T	C	0.00040	FRG1BP	+	FALSE
chr1	45242861	A	G	0.00911	RPS8	+	TRUE	AluSz	SINE,Alu
chr2	102508659	A	T	0.00261	MAP4K4	+	FALSE
chr19	65489	C	A	0.00494	WASH5P	-	FALSE	L2b	SINE,Alu
chr16	66765441	G	T	4.44089E-16	DYNC1LI2	-	FALSE	L2c	SINE,Alu
chr2	45640374	C	A	0.00578	SRBD1	-	FALSE
chr1	180063334	G	A	2.71425E-05	CEP350	+	FALSE
chr2	37331065	T	C	0.00293		.	FALSE	AluSx1	SINE,Alu
chr1	11710798	T	G	0.00328	FBXO2	-	FALSE	(CCT)n	SINE,Alu
chr17	80347528	T	C	0.00048	OGFOD3	-	TRUE	AluJb	SINE,Alu
chr1	38327700	T	C	0.00510	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr15	90819471	A	G	7.41591E-05		.	FALSE	AluSx	SINE,Alu
chr7	6505901	T	C	1.53488E-09	KDELR2	-	FALSE
chr1	16787985	A	G	0.00053		.	FALSE	AluSz	SINE,Alu
chr1	193054154	G	A	0.00757	TROVE2	+	FALSE
chr1	148004548	T	C	0.00220	NBPF8	-	FALSE
chr3	14986453	T	C	1.05842E-07	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	114515717	G	A	0.00018	HIPK1	+	FALSE
chr1	19586501	A	G	0.00019	MRTO4	+	TRUE	AluSz	SINE,Alu
chr3	193854148	T	A	0.00106	HES1	+	FALSE
chr3	57126614	C	T	0.00358	IL17RD	-	FALSE	AluY	SINE,Alu
chr1	110466466	T	C	0.00135	CSF1	+	FALSE
chr16	87443734	C	T	0.00074	ZCCHC14	-	FALSE
chr4	2940098	T	C	0.00034	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	21544601	C	T	0.00196	ECE1	-	FALSE
chr5	70503941	C	A	0.00130		.	FALSE
chr19	16661541	T	C	0.00120	SLC35E1	-	TRUE	AluSz	SINE,Alu
chr2	236957822	G	A	0.00929	AGAP1	+	FALSE
chr1	182569318	G	T	0.00101	RGS16	-	FALSE
chr8	27632073	T	G	0.00013	ESCO2	+	FALSE
chr2	128603114	T	C	0.00143		.	FALSE	AluSp	SINE,Alu
chr1	6283418	T	C	0.00464	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	145694181	A	G	0.00052	NBPF20,NBPF10	+	TRUE	AluSz	SINE,Alu
chr1	9160958	T	C	3.87385E-05		.	FALSE	AluJb	SINE,Alu
chr2	10586904	C	T	0.00041	ODC1,SNORA80B	-	FALSE
chr1	1447756	G	C	0.00343	ATAD3A	+	FALSE
chr9	103064530	G	A	0.00036	TEX10	-	FALSE
chr1	19665557	A	C	0.00365	CAPZB	-	FALSE
chr1	1252662	T	C	0.00136	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	204521159	A	G	0.00158	MDM4	+	TRUE	AluSp	SINE,Alu
chr5	140594467	G	A	0.00045	PCDHB13	+	FALSE
chr13	114748384	C	T	0.00050	RASA3	-	FALSE
chr3	15094061	G	A	0.00188	MRPS25	-	FALSE
chr1	205320469	G	A	0.00109	KLHDC8A	-	FALSE
chr2	176791250	T	C	0.00078	LNPK	-	TRUE	MSTD	SINE,Alu
chr7	105162638	G	C	0.00155	PUS7	-	FALSE
chr1	16889423	G	C	0.00459	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr5	125961447	A	G	0.00563	PHAX	+	TRUE	AluSz6	SINE,Alu
chr12	133298095	A	G	0.00081	PGAM5	+	TRUE	AluJo	SINE,Alu
chr2	101622889	T	A	0.00022	RPL31	+	FALSE
chr6	42855101	A	G	0.00329	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	145291108	A	C	0.00827	NBPF20	+	FALSE
chr17	65335445	T	C	0.00084	PSMD12	-	TRUE	AluSx	SINE,Alu
chr7	66421684	T	G	0.00042	TMEM248	+	FALSE	AluJr	SINE,Alu
chr2	191745653	T	G	0.00030	GLS	+	FALSE
chr3	196556141	G	A	0.00534	PAK2	+	FALSE
chr1	160967890	T	C	0.00876	F11R	-	TRUE	AluSp	SINE,Alu
chr1	32508478	C	T	0.00509	KHDRBS1	+	FALSE
chr1	1252180	T	C	0.00021	CPSF3L	-	TRUE	AluSx	SINE,Alu
chr1	114438951	A	G	0.00012	AP4B1-AS1,AP4B1	+,-	FALSE
chr19	9672346	T	C	0.00222		.	FALSE	AluJr	SINE,Alu
chr2	61316542	A	G	0.00033	KIAA1841	+	TRUE	AluSx1	SINE,Alu
chr3	112720120	T	G	0.00573	GTPBP8	+	FALSE
chr1	161088583	T	G	0.00745	NIT1	+	FALSE
chr1	145284134	G	C	0.00203	NBPF20,NOTCH2NL	+	FALSE	(TG)n	SINE,Alu
chr17	57279258	A	G	0.00095	PRR11	+	TRUE	AluSq2	SINE,Alu
chr9	34088016	G	A	0.00226	DCAF12	-	FALSE
chr1	144594373	C	G	0.00354	NBPF20	+	FALSE
chr1	173836602	G	A	0.00886	GAS5	-	FALSE	AluSx	SINE,Alu
chr7	135285707	G	A	0.00084	NUP205	+	FALSE
chr11	68523082	T	C	0.00019	CPT1A	-	TRUE	AluY	SINE,Alu
chr1	10517290	T	C	0.00437		.	FALSE	AluJr	SINE,Alu
chr2	11318235	G	C	0.00911	PQLC3	+	FALSE
chr20	25428294	A	G	1.11452E-05	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	45975498	A	G	0.00018	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	10519951	T	C	0.00499		.	FALSE	AluJr	SINE,Alu
chr2	131131424	G	C	0.00845	PTPN18	+	FALSE
chr1	32638775	A	T	0.00949	KPNA6	+	FALSE	(A)n	SINE,Alu
chr1	27181647	G	A	0.00103	ZDHHC18	+	FALSE
chr1	28662105	A	G	9.98367E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	168220489	A	G	0.00525		.	FALSE	AluSz6	SINE,Alu
chrX	123046741	A	G	0.00169	XIAP	+	TRUE	AluSz	SINE,Alu
chr5	71654855	G	C	0.00414	PTCD2	+	FALSE
chr2	201842323	T	C	0.00390	FAM126B	-	TRUE	AluJb	SINE,Alu
chr4	128756628	A	G	0.00011		.	FALSE	AluSx	SINE,Alu
chr1	116235186	A	G	0.00054	VANGL1	+	FALSE
chr1	33409693	G	A	0.00722	RNF19B	-	FALSE
chr1	1550392	C	T	0.00617		.	FALSE	AluSg	SINE,Alu
chr17	57279257	A	G	0.00077	PRR11	+	TRUE	AluSq2	SINE,Alu
chr12	27953264	A	T	0.00688	KLHL42	+	FALSE
chr1	33148736	A	G	0.00849	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr2	99216531	A	G	0.00049	COA5	-	FALSE	MLT1K	SINE,Alu
chr3	48787640	T	C	0.00038	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	20238574	C	T	6.32696E-05	OTUD3	+	FALSE
chr13	50273970	C	T	1.77946E-05	KPNA3	-	FALSE
chr2	120022385	C	T	0.00184	STEAP3	+	FALSE
chr2	174090332	A	C	0.00918	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	16912085	T	C	0.00206	NBPF1	-	FALSE
chr1	33960062	A	G	0.00437	ZSCAN20	+	FALSE
chr1	44459935	T	C	0.00953	CCDC24	+	FALSE	AluJb	SINE,Alu
chr1	118066724	A	T	0.00979	MAN1A2	+	FALSE
chr5	131804838	A	G	0.00036	C5orf56	+	TRUE	MLT1D	SINE,Alu
chr3	107773064	T	C	0.00421	CD47	-	TRUE	FLAM_A	SINE,Alu
chr1	54692341	T	C	0.00045	SSBP3	-	FALSE	(T)n	SINE,Alu
chr1	47716043	A	G	0.00794	STIL	-	FALSE
chr1	179044174	A	G	0.00410	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	39988084	G	A	0.00060	BMP8A,PPIEL	+,-	FALSE
chr4	2940413	T	C	0.00311	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr10	100177984	C	T	6.55965E-05	HPS1	-	FALSE
chr7	158590740	A	T	0.00211	ESYT2	-	FALSE
chr2	223807974	A	T	0.00593	ACSL3	+	FALSE
chr4	38946824	C	T	0.00250	FAM114A1	+	FALSE
chr10	62554474	T	G	6.65730E-05	CDK1	+	FALSE
chr4	6644457	G	A	0.00059	MRFAP1	+	FALSE
chrX	9863112	A	G	0.00498	SHROOM2	+	FALSE
chr5	56177851	A	T	0.00796	MAP3K1	+	FALSE	(CAA)n	SINE,Alu
chr1	154554945	A	G	0.00877	ADAR	-	FALSE
chr1	1255402	C	G	0.00785	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr3	195411498	G	A	0.00722	SDHAP2	+	FALSE
chr20	35410314	T	C	0.00602	SOGA1	-	TRUE	AluSz	SINE,Alu
chr12	133298423	A	G	2.89213E-13	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	10517613	T	C	0.00499		.	FALSE	AluSx1	SINE,Alu
chr1	150548877	C	G	0.00071	MCL1	-	FALSE
chr19	53155674	T	C	1.27993E-05	ZNF83	-	TRUE	AluSg	SINE,Alu
chr1	100489452	A	G	0.00741	SLC35A3	+	TRUE	AluSc	SINE,Alu
chr1	100490274	A	G	0.00234	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr1	10519148	T	C	0.00611		.	FALSE	AluSx3	SINE,Alu
chr8	1730491	A	G	5.38446E-06	CLN8	+	TRUE	AluSx1	SINE,Alu
chr1	33149256	A	G	0.00286	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	87573349	C	G	0.00914	HS2ST1	+	FALSE
chr1	148003752	T	C	0.00015	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr1	6282400	T	C	0.00601	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	567557	A	G	0.00649		.	FALSE
chr1	6651728	C	T	0.00118	KLHL21	-	FALSE
chr1	27992825	G	A	0.00012	IFI6	-	FALSE
chr4	39551179	T	C	0.00142	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr17	46024807	C	T	0.00295	PNPO	+	FALSE
chr1	145281633	C	A	0.00022	NBPF20,NOTCH2NL	+	FALSE
chr6	52269046	C	G	0.00338	PAQR8	+	FALSE
chr3	124948045	G	C	0.00784	ZNF148	-	FALSE
chr3	24163645	C	G	1.00972E-05	THRB	-	FALSE
chr1	45976259	A	C	0.00015	MMACHC	+	FALSE
chr1	35319119	A	T	0.00111	SMIM12	-	FALSE	L1ME4c	SINE,Alu
chr1	16133978	T	C	0.00625	UQCRHL	-	FALSE
chr14	50053316	T	C	0.00115		.	FALSE	7SLRNA	SINE,Alu
chr6	44417182	A	G	0.00018	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	15993514	C	T	6.34808E-08		.	FALSE	AluSx4	SINE,Alu
chr3	196729939	C	T	0.00862	MELTF,MFI2-AS1	+,-	FALSE	G-rich	SINE,Alu
chr1	16928737	C	T	0.00796	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr3	49315588	T	G	0.00182	USP4	-	FALSE
chr1	10517613	T	C	0.00375		.	FALSE	AluSx1	SINE,Alu
chr1	179832748	G	C	7.50400E-12	TOR1AIP2	-	FALSE	FLAM_C	SINE,Alu
chr1	89479063	G	A	0.00076	GBP3	-	FALSE
chr1	6282400	T	C	0.00132	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	101444796	C	T	0.00453	SLC30A7	+	FALSE
chr1	200589813	C	A	1.20032E-05	KIF14	-	FALSE
chr16	10624967	T	C	0.00013	EMP2	-	TRUE	AluSx3	SINE,Alu
chr9	115446747	T	C	0.00648	INIP	-	TRUE	AluJr	SINE,Alu
chr6	37138024	G	C	0.00892	PIM1	+	FALSE	(GCA)n	SINE,Alu
chr1	214531079	A	G	0.00124	PTPN14	-	FALSE
chr1	27202844	T	C	0.00076		.	FALSE	AluSq2	SINE,Alu
chr1	197073932	T	C	0.00032	ASPM	-	FALSE
chr3	195415462	G	A	0.00140	LINC00969,SDHAP2	+	FALSE
chr7	102277600	T	C	0.00240	POLR2J2,UPK3BL	-	TRUE	AluSc	SINE,Alu
chr13	52327020	G	A	0.00019	WDFY2	+	FALSE
chr3	24019987	A	C	0.00563	NR1D2	+	FALSE
chr1	26158908	G	C	0.00181	MTFR1L,AUNIP	+,-	FALSE
chr2	128063523	G	C	0.00174	MAP3K2	-	FALSE
chr1	78187733	G	A	0.00388	USP33	-	FALSE
chr1	179044181	A	G	1.64117E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	23636275	G	T	0.00258	HNRNPR	-	FALSE
chr1	27204436	T	C	1.54117E-06		.	FALSE	AluSg7	SINE,Alu
chr6	42856007	A	G	0.00212	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	145513098	A	G	0.00067	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr15	41590287	A	G	0.00568	OIP5-AS1	+	FALSE
chr1	15736752	G	A	0.00170	EFHD2	+	FALSE
chr19	59095573	A	G	0.00169	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr4	142945451	T	C	0.00585		.	FALSE
chr1	203822584	T	C	5.41257E-07	ZC3H11A	+	FALSE
chr1	202696878	C	T	0.00159	KDM5B	-	FALSE
chr7	131241052	A	G	0.00663	PODXL	-	FALSE	(GGCGAC)n	SINE,Alu
chr1	44035352	C	T	0.00170	PTPRF	+	FALSE
chr7	937828	G	A	0.00605	ADAP1	-	FALSE
chr1	39549983	G	A	0.00896	MACF1	+	FALSE
chr1	184762627	T	C	0.00416	FAM129A	-	TRUE	AluSz	SINE,Alu
chr1	114940211	G	T	8.00129E-05	TRIM33	-	FALSE	(T)n	SINE,Alu
chr4	153701130	C	T	2.11271E-05	ARFIP1	+	FALSE
chr12	56510708	A	G	0.00050	RPL41	+	FALSE
chr1	204521512	A	G	7.69882E-05	MDM4	+	TRUE	AluSg	SINE,Alu
chr17	263367	A	T	2.02495E-05	LOC105371430,C17orf97	+,-	FALSE
chr1	228880021	C	T	4.50271E-05	RHOU	+	FALSE
chr4	141600320	A	G	0.00179	TBC1D9	-	FALSE
chr10	89623860	C	G	0.00071	PTEN	+	FALSE	(CGG)n	SINE,Alu
chr6	33172015	T	C	5.04816E-05		.	FALSE
chr6	13788294	T	C	0.00017	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	118167515	C	T	0.00852	FAM46C	+	FALSE
chr6	41900765	A	G	0.00256	BYSL	+	FALSE
chr1	92147985	C	A	0.00370	TGFBR3	-	FALSE
chr4	2940165	T	C	0.00201	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	120164552	G	A	0.00023	ZNF697	-	FALSE
chr6	160211652	C	G	0.00719	MRPL18	+	FALSE
chr9	131812176	C	T	0.00220	MIGA2	+	FALSE
chr5	139680027	A	G	0.00155	PFDN1	-	FALSE
chr3	47627382	A	T	2.68370E-06	SMARCC1	-	FALSE
chr1	36068276	T	C	0.00339	PSMB2	-	TRUE	AluSc	SINE,Alu
chr14	75202312	A	G	3.27721E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr2	232319611	A	T	3.84700E-07	NCL	-	FALSE
chr1	949608	G	A	0.00416	ISG15	+	FALSE
chr1	75190452	C	T	4.33030E-05	CRYZ	-	FALSE
chr1	17394775	G	A	0.00103	PADI2	-	FALSE

RBP	PSIP1
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR744YVR
Platform	HiSeq
Pubmed ID	32252787

PSIP1 - Target Gene Network