RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	117945049	G	A	0.00120	MAN1A2	+	FALSE
chr5	121362874	A	G	0.00022	SRFBP1	+	TRUE	FRAM	SINE,Alu
chr1	94335335	G	T	0.00425	DNTTIP2	-	FALSE
chr6	27327349	C	G	0.00359	ZNF204P	-	FALSE
chr9	131457814	G	A	0.00021	SET	+	FALSE
chr1	1595006	T	C	0.00156	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr9	14921850	A	G	0.00112		.	FALSE
chr9	102744698	G	T	0.00301	ERP44	-	FALSE
chr1	19953120	G	A	0.00027	MINOS1,MINOS1-NBL1	+	FALSE
chr1	144931727	G	A	0.00521	NBPF20,PDE4DIP	+,-	FALSE
chr1	19543456	T	C	0.00451	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr5	122359499	C	A	0.00304	PPIC	-	FALSE	(AC)n	SINE,Alu
chr1	6283430	T	C	0.00751	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	10521172	T	C	1.01590E-06	DFFA	-	TRUE	AluY	SINE,Alu
chr1	109240642	A	C	0.00373	PRPF38B	+	FALSE
chr1	36690599	A	G	0.00406	THRAP3	+	FALSE
chr6	52226984	G	A	0.00127	PAQR8	+	FALSE	(GCTCGG)n	SINE,Alu
chr1	153587256	A	T	0.00013	S100A14	-	FALSE
chr5	180262080	A	G	0.00259	LINC00847	+	TRUE	MLT2B3	SINE,Alu
chr11	32125961	C	T	0.00118	RCN1	+	FALSE
chr12	124146094	A	G	2.86040E-06	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr1	3697486	C	G	0.00110	LRRC47	-	FALSE	AluSc	SINE,Alu
chr1	93617403	T	G	0.00053	TMED5	-	FALSE
chr1	53288862	A	G	0.00155	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr4	4864940	C	T	0.00247	MSX1	+	FALSE
chr1	36068295	T	C	2.11660E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	24288530	A	T	0.00915	PNRC2	+	FALSE
chr1	10520067	T	C	2.08449E-05		.	FALSE	AluSx	SINE,Alu
chr1	28661657	A	G	0.00910	MED18	+	TRUE	AluSg	SINE,Alu
chr3	52567617	A	G	0.00025	NT5DC2	-	FALSE	G-rich	SINE,Alu
chr1	78414329	G	A	0.00635	FUBP1	-	FALSE	A-rich	SINE,Alu
chr5	79923843	T	C	0.00229	DHFR	-	TRUE	AluSp	SINE,Alu
chr15	91044379	T	G	0.00440	IQGAP1	+	FALSE
chr8	100890376	G	T	0.00920	COX6C	-	FALSE
chr2	37330576	T	C	0.00055		.	FALSE	AluSq2	SINE,Alu
chr1	190234133	A	C	5.13910E-06	BRINP3	-	FALSE
chr1	20977380	T	C	0.00695	PINK1,PINK1-AS	+,-	FALSE
chr1	26755643	A	G	0.00068	LIN28A	+	FALSE	AluSc	SINE,Alu
chr1	143189486	A	G	0.00122	LOC102723769	-	FALSE
chr6	74346347	A	G	4.16931E-07	SLC17A5	-	FALSE
chr1	144868170	C	T	0.00750	NBPF20,PDE4DIP	+,-	FALSE
chr1	6282237	T	C	0.00395	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	144595935	G	A	0.00837	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	949608	G	A	0.00435	ISG15	+	FALSE
chr1	32373437	G	A	3.32434E-12	PTP4A2	-	FALSE
chr3	78646942	T	G	0.00093	ROBO1	-	FALSE
chr4	6304286	C	T	0.00054	WFS1	+	FALSE
chr1	117529752	C	A	0.00024	PTGFRN	+	FALSE
chr3	66024384	G	C	0.00096	MAGI1	-	FALSE
chr4	155456608	A	G	0.00734	PLRG1	-	FALSE	L1MC5	SINE,Alu
chr11	68523337	T	C	0.00016	CPT1A	-	TRUE	AluSq	SINE,Alu
chr6	3022725	T	C	0.00081	HTATSF1P2	-	TRUE	AluSz	SINE,Alu
chr6	79595097	A	G	0.00712	IRAK1BP1	+	FALSE
chr4	57326159	A	G	0.00019	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	32953296	A	G	5.26589E-05	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr1	19542415	T	C	0.00204	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	10192642	A	G	0.00217	VHL	+	TRUE	AluSx1	SINE,Alu
chr4	170037423	G	T	0.00802	SH3RF1	-	FALSE
chr2	37327662	T	C	0.00220		.	FALSE
chr2	37333924	T	C	0.00298	EIF2AK2	-	FALSE	AluSz	SINE,Alu
chr4	73923043	T	C	0.00236	COX18	-	TRUE	AluSz	SINE,Alu
chr8	12880381	A	G	0.00031	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr1	33145959	T	G	0.00755	SYNC,RBBP4	+,-	FALSE	(T)n	SINE,Alu
chr3	15114306	T	C	0.00036	RBSN	-	TRUE	AluY	SINE,Alu
chr5	140751128	C	G	0.00647	PCDHGA1,PCDHGA2,PCDHGA3,PCDHGB1,PCDHGA4,PCDHGB2,PCDHGA5,PCDHGB3	+	FALSE
chr17	72206017	T	A	6.66319E-05	RPL38	+	FALSE
chr1	9162362	T	C	0.00526		.	FALSE	AluSx	SINE,Alu
chr1	10519932	T	C	0.00547		.	FALSE	AluJr	SINE,Alu
chr4	16258050	C	T	0.00617	TAPT1-AS1	+	FALSE
chr1	53291420	A	G	6.80791E-05	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr4	119553307	T	C	0.00096	LOC729218	+	FALSE
chr1	2326812	A	G	0.00709	RER1	+	FALSE
chr1	116239368	G	A	5.97604E-05	VANGL1	+	FALSE
chr15	41590982	A	G	0.00327	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr2	99812988	A	G	0.00700	MRPL30	+	TRUE	AluJb	SINE,Alu
chr19	58357211	A	G	0.00041	ZNF587B	+	TRUE	AluSx3	SINE,Alu
chr1	32158374	T	C	0.00134	COL16A1	-	FALSE
chr1	35647099	A	G	0.00092	SFPQ	-	FALSE
chr9	132575836	A	C	0.00546	TOR1A	-	FALSE
chr1	32631809	C	T	2.91083E-08	KPNA6	+	FALSE
chr1	109475572	A	G	0.00096	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	145369706	T	C	0.00186	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr7	137612915	G	A	0.00057	CREB3L2	-	FALSE
chr1	38155699	T	G	0.00734	C1orf109	-	FALSE	AluSx1	SINE,Alu
chr12	124069108	G	A	0.00635	TMED2	+	FALSE	(GCG)n	SINE,Alu
chr9	135172412	A	G	0.00394	SETX	-	FALSE
chr2	128602913	G	A	0.00230		.	FALSE
chr5	74072648	T	A	0.00036	NSA2	+	FALSE
chr1	9163319	T	C	0.00936		.	FALSE	AluSp	SINE,Alu
chr1	28859267	A	C	2.52971E-07	RCC1	+	FALSE
chr1	16133978	T	C	0.00515	UQCRHL	-	FALSE
chr1	148577409	C	A	0.00897	NBPF15	+	FALSE
chr1	19984346	A	G	0.00071	MINOS1-NBL1,NBL1	+	FALSE
chr1	150704633	T	C	1.58455E-05	CTSS	-	TRUE	AluJo	SINE,Alu
chr2	174090331	A	C	0.00901	ZAK,MLK7-AS1	+,-	FALSE	AluSx	SINE,Alu
chr4	13601337	G	A	7.28365E-09	BOD1L1	-	FALSE
chr4	153898316	A	G	0.00312	FHDC1	+	TRUE	AluJo	SINE,Alu
chr5	96366330	G	C	0.00251		.	FALSE	(TG)n	SINE,Alu
chr10	79800443	A	G	0.00971	RPS24	+	FALSE
chr1	53291395	A	G	0.00323	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr7	35840866	A	G	0.00947	SEPT7	+	FALSE
chr1	111721354	G	T	0.00616	CEPT1	+	FALSE
chr2	37328013	T	C	1.05952E-05		.	FALSE
chr3	72426071	T	A	0.00169	RYBP	-	FALSE	(T)n	SINE,Alu
chr3	100083425	G	A	0.00717	TOMM70	-	FALSE	FAM	SINE,Alu
chr1	204525548	A	G	0.00027	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	138156	G	T	0.00048	LOC729737	-	FALSE
chr1	16933110	T	C	0.00143	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr7	29962586	G	A	0.00051	SCRN1	-	FALSE
chr1	160967848	T	C	0.00200	F11R	-	TRUE	AluSp	SINE,Alu
chr6	42856064	A	G	0.00019	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr7	6501832	A	C	0.00175	KDELR2	-	FALSE
chr2	217366971	A	G	0.00616		.	FALSE	AluSz6	SINE,Alu
chr1	1255402	C	G	0.00333	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr1	207943188	A	G	0.00263	CD46	+	TRUE	AluSx1	SINE,Alu
chr1	184661933	G	A	0.00138	EDEM3	-	FALSE
chr8	40011786	C	A	0.00196	C8orf4	+	FALSE
chr1	16958047	C	T	2.98219E-05		.	FALSE
chr4	165998078	T	C	0.00567	TMEM192	-	TRUE	AluSx	SINE,Alu
chr11	48189152	A	C	0.00050	PTPRJ	+	FALSE
chr1	31192650	T	G	0.00727	MATN1,MATN1-AS1	+,-	FALSE
chr2	198368110	C	A	0.00053	HSPE1,HSPE1-MOB4	+	FALSE
chr5	177658896	A	C	0.00642	PHYKPL	-	FALSE
chr12	133298254	A	G	0.00849	PGAM5	+	TRUE	AluSp	SINE,Alu
chr2	112252464	G	A	2.95640E-06	MIR4435-2HG	-	FALSE
chr17	65334802	T	C	1.10547E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	46075719	A	G	0.00461	NASP	+	TRUE	AluSx4	SINE,Alu
chr7	102016321	C	T	0.00201	LOC100289561,LOC100630923	+	FALSE
chr1	28661576	A	G	0.00939	MED18	+	TRUE	AluSg	SINE,Alu
chr1	185069561	A	G	0.00675	RNF2	+	FALSE
chr19	59095456	A	G	0.00125	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr1	172547465	A	G	0.00725	SUCO	+	FALSE
chr2	37329369	T	C	0.00010		.	FALSE	AluJr4	SINE,Alu
chr1	100490067	A	G	0.00267	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	326499	A	G	0.00583		.	FALSE
chr7	4809089	A	G	0.00552	FOXK1	+	TRUE	AluSx1	SINE,Alu
chr9	140709880	C	T	0.00178	EHMT1	+	FALSE
chr19	58375157	A	G	0.00408	ZNF587	+	TRUE	AluSx4	SINE,Alu
chr2	10270757	A	T	0.00382	RRM2	+	FALSE
chr1	10520378	T	C	0.00145		.	FALSE	AluSx1	SINE,Alu
chr1	145209366	A	G	0.00499	NBPF20,NOTCH2NL	+	FALSE
chr2	178186556	G	A	0.00917	LOC100130691	-	FALSE
chr2	203742141	T	C	0.00044		.	FALSE	AluJb	SINE,Alu
chr2	10586899	G	A	0.00312	ODC1,SNORA80B	-	FALSE
chr1	10093749	T	C	0.00521	UBE4B	+	FALSE
chr1	109239335	G	T	0.00011	PRPF38B	+	FALSE
chr1	6582527	T	C	0.00139	NOL9	-	TRUE	AluSx1	SINE,Alu
chr19	54971229	T	C	0.00202	LENG8	+	FALSE
chr1	28826085	A	G	0.00153	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr15	102516561	T	C	0.00805	WASH3P	+	FALSE
chr1	16891340	T	A	0.00022	NBPF1	-	FALSE
chr3	15838717	A	C	0.00673	ANKRD28	-	FALSE	(A)n	SINE,Alu
chr2	99812289	A	G	0.00282	MRPL30	+	TRUE	AluSx	SINE,Alu
chr3	195243003	A	C	0.00301	PPP1R2	-	FALSE
chr1	9163334	T	C	0.00074		.	FALSE	AluSp	SINE,Alu
chr2	27293351	C	T	0.00314	AGBL5,OST4	+,-	FALSE
chr1	161559407	A	G	0.00237	FCGR2C	+	FALSE
chr1	27992825	G	A	0.00012	IFI6	-	FALSE
chr1	17735300	C	A	0.00128	RCC2	-	FALSE
chr1	53291420	A	G	0.00069	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr15	83685469	T	C	0.00976	BTBD1	-	FALSE
chr1	114438951	A	G	0.00017	AP4B1-AS1,AP4B1	+,-	FALSE
chr1	31905889	A	G	0.00565	SERINC2	+	FALSE
chr7	17384393	A	G	1.74996E-06	AHR	+	TRUE	AluSx	SINE,Alu
chr16	68962	C	T	0.00852		.	FALSE
chr4	17803568	T	C	0.00044	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	20826788	A	T	6.12716E-05	MUL1	-	FALSE
chr15	41573612	C	A	0.00355	CHP1	+	FALSE
chr1	36067838	T	C	0.00348	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	156567496	C	T	0.00012	GPATCH4	-	FALSE	MIR3	SINE,Alu
chr1	6583383	T	C	0.00305	NOL9	-	TRUE	AluSq	SINE,Alu
chr1	162354203	A	G	0.00956	C1orf226	+	FALSE
chr8	26435508	C	T	0.00106	DPYSL2	+	FALSE	(TC)n	SINE,Alu
chr7	100031511	C	T	0.00490	MEPCE	+	FALSE
chr17	79476999	G	T	6.09622E-06	ACTG1	-	FALSE
chr1	16524869	T	C	0.00164	ARHGEF19	-	FALSE
chr10	98278593	A	T	0.00792	TM9SF3	-	FALSE
chr1	51873951	G	A	0.00591	EPS15	-	FALSE
chr3	14239845	G	A	0.00375	LSM3	+	FALSE
chr3	44791320	T	C	0.00059	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr1	145112414	T	C	0.00079	NBPF20,SEC22B	+	FALSE
chr3	195451488	C	T	1.73907E-06	MUC20	+	FALSE
chr5	178293266	G	A	0.00924	ZNF354B	+	FALSE
chr1	1252513	T	C	0.00223	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr2	20648961	T	C	0.00304	RHOB	+	FALSE
chr7	6501828	C	A	0.00110	KDELR2	-	FALSE
chr1	54563156	A	G	3.59804E-06	TCEANC2	+	FALSE
chr1	180247474	T	C	0.00022		.	FALSE
chr4	10443059	A	T	0.00187	ZNF518B	-	FALSE
chr1	36068237	T	C	0.00974	PSMB2	-	TRUE	AluSc	SINE,Alu
chr7	116340269	C	T	0.00313	MET	+	FALSE
chr17	4721376	A	G	0.00177	PLD2	+	FALSE
chr1	202861470	C	A	0.00441	KLHL12	-	FALSE
chr2	37331614	T	C	0.00876		.	FALSE	AluJb	SINE,Alu
chr19	58375195	A	G	0.00080	ZNF587	+	TRUE	AluSx4	SINE,Alu
chr1	29041856	A	G	0.00756	GMEB1	+	TRUE	AluSq4	SINE,Alu
chr3	197611125	A	G	0.00948		.	FALSE	AluSx1	SINE,Alu
chr4	39551975	T	C	5.31269E-07	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr2	38971059	A	C	0.00539	SRSF7	-	FALSE
chr4	129795672	C	A	0.00284	JADE1	+	FALSE
chr4	190873405	C	T	0.00325	FRG1	+	FALSE
chr1	109818160	T	G	3.82986E-06	CELSR2	+	FALSE
chr3	196670087	G	A	4.07177E-06	NCBP2-AS2	+	FALSE
chr1	11347155	C	T	0.00273	UBIAD1	+	FALSE
chr2	105881071	C	A	0.00851	TGFBRAP1	-	FALSE
chr3	119212012	A	C	0.00976	POGLUT1	+	FALSE
chr1	113672634	A	G	0.00967		.	FALSE	AluJb	SINE,Alu
chr10	22824831	C	T	0.00702	PIP4K2A	-	FALSE
chr1	16889985	T	C	0.00778	NBPF1	-	FALSE
chr2	24225006	A	G	0.00555		.	FALSE	AluSx	SINE,Alu
chr2	178129405	C	T	0.00295	NFE2L2	-	FALSE	(CGG)n	SINE,Alu
chr5	68850966	G	T	0.00134	OCLN	+	FALSE	AluSx4	SINE,Alu
chr1	115259543	C	T	0.00492	CSDE1	-	FALSE
chr1	165877666	T	C	0.00189	UCK2	+	FALSE	(T)n	SINE,Alu
chr4	113346996	G	A	0.00191	ALPK1	+	FALSE
chr12	72096335	A	G	1.07858E-05	TMEM19	+	FALSE	AluSz6	SINE,Alu
chr5	52393421	C	T	0.00144	MOCS2	-	FALSE	L1MA9	SINE,Alu
chr8	12283440	A	G	0.00041	FAM86B2	-	FALSE
chr1	74672323	C	A	0.00616	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr2	198416724	A	T	0.00378	HSPE1-MOB4,MOB4	+	FALSE
chr17	38512480	C	T	0.00725	RARA	+	FALSE
chr1	120612154	C	G	0.00054	NOTCH2	-	FALSE
chr1	36299630	A	G	0.00828	AGO4	+	FALSE
chr1	38279666	C	T	0.00521	MTF1	-	FALSE	(T)n	SINE,Alu
chr1	24862649	A	G	0.00299	RCAN3	+	FALSE
chr1	10520702	T	C	0.00883	DFFA	-	TRUE	AluSc8	SINE,Alu
chr4	190883001	C	G	0.00297	FRG1	+	FALSE
chr1	67874689	T	C	7.42611E-10	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	10517538	T	C	0.00840		.	FALSE	AluSx1	SINE,Alu
chr1	20976075	T	C	0.00135	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr8	73958240	G	A	0.00093	TERF1	+	FALSE
chr17	58024275	A	G	0.00455	RPS6KB1	+	FALSE
chr1	10521170	T	C	0.00538	DFFA	-	TRUE	AluY	SINE,Alu
chr1	24861704	G	A	0.00345	RCAN3	+	FALSE
chr4	120216206	C	T	0.00205	USP53	+	FALSE
chr3	44692564	C	G	0.00182	ZNF35	+	FALSE
chr5	175802154	C	T	0.00883		.	FALSE	(CATC)n	SINE,Alu
chr1	67874696	T	C	0.00014	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr4	57326960	A	G	2.00220E-09	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	36067886	T	C	1.98907E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	37331531	T	C	0.00389		.	FALSE	AluJb	SINE,Alu
chr12	133298417	A	G	6.66134E-16	PGAM5	+	TRUE	AluSp	SINE,Alu
chr5	150869672	A	T	0.00755	SLC36A1	+	FALSE
chr8	1730491	A	G	5.38446E-06	CLN8	+	TRUE	AluSx1	SINE,Alu
chr1	22854702	C	T	4.66415E-11	ZBTB40	+	FALSE
chr1	110049203	G	C	0.00209		.	FALSE
chr1	16889642	T	C	0.00017	NBPF1	-	TRUE
chr6	159396143	T	C	0.00185		.	FALSE	AluSc	SINE,Alu
chr2	38971644	T	G	0.00239	SRSF7	-	FALSE
chr2	242512159	A	G	0.00243	BOK	+	FALSE
chrX	152916233	C	A	0.00758	DUSP9	+	FALSE

RBP	SF3B4
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR081XRA
Platform	HiSeq
Pubmed ID	32252787

SF3B4 - Target Gene Network