RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr4	76568481	A	T	0.00744	G3BP2	-	FALSE	(TA)n	SINE,Alu
chr1	27182750	G	C	0.00141		.	FALSE
chr1	39988084	G	A	0.00060	BMP8A,PPIEL	+,-	FALSE
chr4	39780672	C	A	0.00743	UBE2K	+	FALSE
chr2	196999051	C	G	0.00403	STK17B	-	FALSE	MER1B	SINE,Alu
chr2	32534897	A	G	0.00111		.	FALSE	AluSx1	SINE,Alu
chr10	99504630	G	T	0.00544	ZFYVE27	+	FALSE
chr16	58195430	G	C	0.00325	CSNK2A2	-	FALSE	(AC)n	SINE,Alu
chr2	37330614	T	C	0.00410		.	FALSE	AluSq2	SINE,Alu
chr2	105962339	G	A	0.00079	C2orf49	+	FALSE	AluSp	SINE,Alu
chr15	42503334	C	T	0.00448	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr1	156692054	A	T	0.00471	ISG20L2	-	FALSE	AluY	SINE,Alu
chr1	65900357	G	T	0.00851	LEPR,LEPROT	+	FALSE
chr1	20826788	A	T	6.12716E-05	MUL1	-	FALSE
chr10	116603648	A	G	0.00267	FAM160B1	+	FALSE
chr1	154323598	T	A	0.00198	ATP8B2	+	FALSE	(TA)n	SINE,Alu
chr5	122682348	A	G	0.00377	CEP120	-	FALSE
chr9	100777799	G	A	0.00675	ANP32B	+	FALSE
chr1	100654765	T	C	0.00254	DBT	-	TRUE	AluSz	SINE,Alu
chr1	32681797	C	T	0.00791	DCDC2B,TMEM234	+,-	FALSE
chr1	1252513	T	C	0.00223	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	16893763	T	C	0.00159	NBPF1	-	FALSE
chr2	208619742	A	G	0.00500	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr1	16889639	T	C	0.00524	NBPF1	-	TRUE
chr15	42192345	T	C	0.00039	EHD4	-	TRUE
chr3	176739694	T	C	1.91391E-08	TBL1XR1	-	FALSE
chr1	10520487	T	C	0.00559		.	FALSE	AluSx1	SINE,Alu
chr1	22400707	C	G	0.00232	CDC42	+	FALSE	AluSc8	SINE,Alu
chr1	1309885	A	G	0.00010	AURKAIP1	-	FALSE
chr1	211921702	T	C	0.00014	LPGAT1	-	FALSE
chr1	89477559	C	T	0.00044	GBP3	-	FALSE
chr7	75115154	C	T	0.00405	POM121C	-	FALSE
chr3	183889337	A	T	3.46641E-05	DVL3	+	FALSE
chr1	28825486	A	G	0.00049	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	1309464	C	T	1.11022E-16	AURKAIP1	-	FALSE
chr1	11783009	A	G	7.55078E-05		.	FALSE	AluSx	SINE,Alu
chr3	53220215	G	A	2.78975E-05	PRKCD	+	FALSE
chr1	145513017	A	G	0.00142	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	3731965	G	A	0.00209	CEP104	-	FALSE
chr1	11347150	C	A	0.00016	UBIAD1	+	FALSE
chr2	61278030	A	G	0.00218	PEX13	+	TRUE	AluY	SINE,Alu
chr1	8921471	C	T	6.67995E-05	ENO1	-	FALSE
chr1	149818441	T	C	0.00773		.	FALSE	MLT1D	SINE,Alu
chr1	6681836	G	A	5.48259E-05	PHF13	+	FALSE
chr2	176792531	C	T	0.00779	LNPK	-	FALSE
chr1	202984020	A	T	0.00842	TMEM183A,TMEM183B	+	FALSE
chr12	133298125	A	G	0.00025	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	207247476	T	G	0.00576	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr1	20975992	T	C	0.00027	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr2	87820785	C	T	0.00110	LINC00152	+	FALSE
chr1	27992799	T	A	0.00014	IFI6	-	FALSE	FAM	SINE,Alu
chr1	109884775	T	G	0.00026	SORT1	-	FALSE
chr1	9328242	A	G	0.00116	H6PD	+	TRUE	AluJr	SINE,Alu
chr2	61277835	A	G	0.00105	PEX13	+	TRUE	AluY	SINE,Alu
chr2	172178680	T	C	9.91686E-05	METTL8	-	TRUE	AluSx3	SINE,Alu
chr17	5288082	A	G	0.00184	RABEP1	+	TRUE
chr3	148863151	A	G	0.00062	HPS3	+	FALSE
chr9	133777993	G	T	0.00959	FIBCD1	-	FALSE
chr1	65299548	T	A	0.00852	JAK1	-	FALSE
chr19	18476206	A	G	0.00156	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr2	37327662	T	C	0.00220		.	FALSE
chr1	145441841	A	T	0.00636	NBPF20,NBPF10,TXNIP	+	FALSE
chr1	53289892	A	G	0.00070	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr4	89181431	T	C	5.21801E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr1	115275398	T	G	0.00474	CSDE1	-	FALSE
chr2	8823958	G	A	0.00017	ID2	+	FALSE
chr3	24019976	C	A	0.00485	NR1D2	+	FALSE
chr1	100548780	A	T	0.00791	MFSD14A	+	FALSE
chr1	27992798	C	A	0.00690	IFI6	-	FALSE	FAM	SINE,Alu
chr5	149829071	T	C	0.00407	RPS14	-	FALSE
chr1	11814631	A	G	5.11326E-05		.	FALSE
chr1	26152604	T	C	0.00954	MTFR1L	+	FALSE	AluSz6	SINE,Alu
chr1	179044212	A	G	7.62870E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	20826784	T	C	0.00204	MUL1	-	FALSE
chr1	160966351	T	C	0.00034	F11R	-	TRUE	AluSg	SINE,Alu
chr1	46078630	A	G	4.65755E-11	NASP	+	FALSE
chr2	55199563	G	T	0.00172	RTN4	-	FALSE
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chr1	179813613	T	C	7.15786E-05	TOR1AIP2	-	FALSE
chr19	51172526	G	C	0.00276	SHANK1	-	FALSE
chr3	99516962	C	A	2.05391E-14	MIR548G	-	FALSE
chr1	120162442	T	C	0.00065	ZNF697	-	FALSE
chr1	2115914	G	T	0.00970	PRKCZ,FAAP20	+,-	FALSE
chr4	4291832	A	T	6.49020E-08	LYAR	-	FALSE
chr15	33064742	C	G	0.00215	FMN1	-	FALSE
chr1	120611964	G	C	0.00130	NOTCH2	-	FALSE
chrX	77084007	T	C	0.00141	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	22852880	G	C	0.00247	ZBTB40	+	FALSE
chr19	9672312	T	C	4.30163E-05		.	FALSE	AluJr	SINE,Alu
chr1	109818162	T	C	0.00253	CELSR2	+	FALSE
chr1	38182164	T	A	3.45866E-07	EPHA10	-	FALSE
chr1	145273345	T	C	0.00640	NBPF20,NOTCH2NL	+	FALSE
chr1	146374185	C	G	0.00376	NBPF20,NBPF10,NBPF25P,NBPF12	+	FALSE
chr16	88789702	G	A	0.00125	PIEZO1	-	FALSE
chr1	28662057	A	G	3.94650E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	1593857	T	C	0.00424	CDK11B,SLC35E2B	-	FALSE
chr12	49745431	A	G	0.00033	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr1	10517313	T	C	0.00742		.	FALSE	AluJr	SINE,Alu
chr2	38971640	A	C	0.00050	SRSF7	-	FALSE
chr2	102508659	A	T	0.00261	MAP4K4	+	FALSE
chr11	118880839	A	G	0.00922	CCDC84	+	TRUE	AluJb	SINE,Alu
chr1	145688664	A	T	0.00679	NBPF20,NBPF10,RNF115	+	FALSE
chr1	24086794	G	T	0.00309	TCEB3	+	FALSE	(T)n	SINE,Alu
chr2	37429626	A	G	0.00385	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	32638775	A	T	0.00949	KPNA6	+	FALSE	(A)n	SINE,Alu
chr1	32799530	C	A	8.96009E-06	MARCKSL1	-	FALSE
chr1	54691921	G	A	0.00010	SSBP3	-	FALSE
chr1	10520178	T	C	0.00112		.	FALSE	AluSx	SINE,Alu
chr1	10519936	T	C	0.00607		.	FALSE	AluJr	SINE,Alu
chr1	160966299	T	C	1.46976E-05	F11R	-	TRUE	AluSg	SINE,Alu
chr1	1477244	T	C	0.00365	SSU72	-	FALSE
chr2	38975954	A	C	0.00381	SRSF7	-	FALSE
chr1	145689566	A	G	0.00918	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr4	73923605	T	C	0.00366	COX18	-	TRUE	AluSq2	SINE,Alu
chr16	10624993	T	C	1.49189E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	46075777	A	G	0.00268	NASP	+	TRUE	AluSx4	SINE,Alu
chr3	138121198	C	T	0.00076	MRAS	+	FALSE
chr15	41597669	A	G	0.00087		.	FALSE	AluSz6	SINE,Alu
chr2	203430456	T	G	0.00162	BMPR2	+	FALSE
chr1	161338504	C	G	0.00343		.	FALSE
chr2	201774341	T	C	0.00073		.	FALSE	AluSz	SINE,Alu
chr2	204301754	C	G	0.00012	RAPH1	-	FALSE
chr1	233518885	T	C	0.00021	MLK4	+	FALSE	(TTTC)n	SINE,Alu
chr8	145159707	G	C	0.00158	MAF1	+	FALSE
chr5	37291482	T	C	0.00146		.	FALSE	AluSx3	SINE,Alu
chr1	142660072	T	G	0.00773		.	FALSE
chr15	41593308	A	G	0.00619		.	FALSE	AluSz6	SINE,Alu
chr1	16890598	T	A	0.00428	NBPF1	-	FALSE
chr2	128602462	T	C	0.00298		.	FALSE	AluSq2	SINE,Alu
chr2	158170017	T	C	0.00662	GALNT5	+	FALSE
chr7	17384818	A	G	0.00241	AHR	+	TRUE	AluSc	SINE,Alu
chr1	36529575	A	G	2.40551E-05		.	FALSE	AluJr	SINE,Alu
chr2	47387306	G	T	0.00026	CALM2	-	FALSE
chr3	184300061	T	C	0.00518	EPHB3	+	FALSE	(TG)n	SINE,Alu
chr1	16133914	T	C	0.00156	UQCRHL	-	TRUE
chr3	48787011	T	C	0.00040	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	46075191	C	A	0.00056	NASP	+	FALSE	A-rich	SINE,Alu
chr1	46076462	A	G	0.00730	NASP	+	TRUE	AluSx	SINE,Alu
chr3	10192709	C	T	0.00082	VHL	+	FALSE	AluSx1	SINE,Alu
chr4	110971055	A	T	0.00048	ELOVL6	-	FALSE
chr1	19199221	C	T	0.00095	ALDH4A1	-	FALSE
chr1	10519946	T	C	0.00578		.	FALSE	AluJr	SINE,Alu
chr1	78142901	T	C	0.00332	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr1	10517314	T	C	0.00286		.	FALSE	AluJr	SINE,Alu
chr1	45975574	A	G	0.00050	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr17	4929863	A	G	0.00597	KIF1C	+	TRUE	AluJb	SINE,Alu
chr1	36068295	T	C	0.00393	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	28002602	C	A	0.00037	MRPL33	+	FALSE
chr1	19953124	G	A	0.00137	MINOS1,MINOS1-NBL1	+	FALSE
chr2	191366707	A	G	0.00900	MFSD6	+	FALSE
chr5	95130802	A	T	0.00123	RHOBTB3	+	FALSE	AluSz	SINE,Alu
chr11	65404877	G	A	0.00106	PCNX3	+	FALSE
chr3	88104158	T	A	0.00971	CGGBP1	-	FALSE
chr1	160965379	T	C	0.00477	F11R	-	TRUE	AluSc	SINE,Alu
chr1	110564996	C	T	0.00926	AHCYL1	+	FALSE
chr19	49232226	G	A	0.00887	RASIP1	-	FALSE
chr1	214529320	T	G	0.00365	PTPN14	-	FALSE	AluJb	SINE,Alu
chr7	158719106	G	A	0.00048	WDR60	+	FALSE
chr2	232319611	A	T	3.84700E-07	NCL	-	FALSE
chr1	1597403	C	T	0.00033	CDK11B,SLC35E2B	-	FALSE
chr1	3546136	A	G	2.71404E-05	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr1	6281866	A	C	0.00102	ICMT	-	FALSE
chr8	30536437	T	C	0.00062	GSR	-	FALSE	AluSp	SINE,Alu
chr3	57126614	C	T	0.00358	IL17RD	-	FALSE	AluY	SINE,Alu
chr12	26809316	G	A	0.00150	ITPR2	-	FALSE
chr1	181026558	G	A	0.00217	MR1	+	FALSE
chr1	87572817	C	T	0.00514	HS2ST1	+	FALSE
chr1	145689611	C	A	0.00142	NBPF20,NBPF10	+	FALSE	AluSg	SINE,Alu
chr1	220231276	T	C	0.00937	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr4	95586224	A	G	0.00053	PDLIM5	+	FALSE
chr1	26755536	A	G	0.00515	LIN28A	+	TRUE	AluSc	SINE,Alu
chr3	10193358	A	G	1.11864E-10	VHL	+	TRUE	L1ME4a	SINE,Alu
chr1	10519932	T	C	5.00916E-05		.	FALSE	AluJr	SINE,Alu
chr3	10290513	C	A	0.00577	TATDN2	+	FALSE
chr1	19542401	T	C	0.00071	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	76672504	A	G	0.00010		.	FALSE	7SK	SINE,Alu
chr2	26477130	T	C	0.00501	HADHB	+	FALSE
chr9	137332311	T	G	0.00036	RXRA	+	FALSE
chr1	207221096	G	A	0.00452	YOD1	-	FALSE
chr10	120920588	T	C	0.00304	SFXN4	-	FALSE
chr1	212114666	C	G	0.00858	INTS7	-	FALSE
chr1	6283305	T	C	0.00554	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	150048520	C	T	0.00089	VPS45	+	FALSE
chr19	24104018	A	G	0.00543	ZNF726	+	FALSE	AluSg4	SINE,Alu
chr4	68483804	A	T	0.00720	UBA6	-	FALSE
chr12	133297956	A	G	4.23080E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	51820588	G	A	0.00807	EPS15	-	FALSE
chr12	125511960	A	G	6.81205E-06	THRIL	-	FALSE	AluSx1	SINE,Alu
chr5	125961455	A	G	0.00683	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	89447715	T	G	0.00021	KYAT3,RBMXL1	-	FALSE
chr6	3114457	C	T	0.00320	RIPK1	+	FALSE
chr4	169910101	C	T	0.00026	CBR4	-	FALSE
chr1	204520250	A	G	0.00706	MDM4	+	TRUE	AluJb	SINE,Alu
chr1	32669918	G	A	0.00344	CCDC28B	+	FALSE
chr1	16450928	T	C	0.00113	EPHA2	-	FALSE
chr1	40539213	A	G	0.00693	PPT1	-	FALSE
chr1	17928	T	A	0.00956	WASH7P	-	FALSE
chr1	160967856	T	C	0.00027	F11R	-	TRUE	AluSp	SINE,Alu
chr1	145273431	A	G	0.00203	NBPF20,NOTCH2NL	+	FALSE
chr5	41917696	T	A	0.00045	C5orf51	+	FALSE
chr16	75479250	T	C	0.00568	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr2	37334139	T	C	0.00146	EIF2AK2	-	TRUE	AluSz	SINE,Alu
chr1	24798089	G	A	0.00815	NIPAL3	+	FALSE
chr1	74665493	G	A	7.81871E-05	FPGT-TNNI3K,FPGT	+	FALSE
chr1	6279950	A	G	0.00541	RNF207	+	TRUE	AluSp	SINE,Alu
chr1	47905553	G	A	0.00098	FOXD2	+	FALSE
chr1	13936953	C	T	0.00515	PDPN	+	FALSE
chr1	10519982	T	C	6.11297E-05		.	FALSE	AluJr	SINE,Alu
chr1	36752811	C	T	2.19602E-12	THRAP3	+	FALSE
chr21	18940466	A	T	0.00169	CXADR	+	FALSE	AluY	SINE,Alu
chr1	179042692	A	G	0.00707	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	56961756	A	G	0.00682	PLPP3	-	FALSE
chr1	21806710	T	G	0.00194	NBPF3	+	FALSE
chr1	45975331	A	G	0.00081	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr3	39137788	A	C	0.00830	WDR48	+	FALSE
chr3	15114306	T	C	0.00036	RBSN	-	TRUE	AluY	SINE,Alu
chr1	16918486	C	T	0.00415	NBPF1	-	FALSE
chr8	144827207	A	T	0.00038	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr1	74665493	G	A	0.00128	FPGT-TNNI3K,FPGT	+	FALSE
chr3	49396751	T	C	0.00000	RHOA	-	FALSE
chr1	44685732	T	C	9.79150E-12	DMAP1	+	FALSE
chr1	109465171	T	A	0.00989	GPSM2	+	FALSE
chr14	50361170	C	T	0.00096	ARF6	+	FALSE	(T)n	SINE,Alu
chr2	17836722	T	A	0.00816	VSNL1	+	FALSE
chr1	33277080	C	T	8.00797E-06	YARS	-	FALSE	LTR6A	SINE,Alu
chr2	74686329	C	T	0.00640	INO80B-WBP1,WBP1	+	FALSE
chr1	789232	C	T	0.00335	LINC01128	+	FALSE
chr1	33149260	A	G	0.00143	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	1650801	T	C	0.00827	CDK11B,CDK11A	-	FALSE
chr1	160966301	T	C	8.33949E-06	F11R	-	TRUE	AluSg	SINE,Alu
chr1	110551680	C	T	0.00415	AHCYL1	+	FALSE
chr1	243289448	G	A	0.00036	CEP170	-	FALSE
chr1	10517623	T	C	8.06723E-05		.	FALSE	AluSx1	SINE,Alu
chr5	478174	C	T	0.00392	SLC9A3,LOC100288152	+,-	FALSE
chr4	17802772	G	T	0.00328	DCAF16	-	FALSE	AluSz	SINE,Alu
chr8	30536078	T	C	0.00509	GSR	-	FALSE	AluJr	SINE,Alu
chr1	222906426	T	C	0.00322	BROX	+	FALSE	AluSx	SINE,Alu
chr1	28662254	A	G	0.00505	MED18	+	TRUE	AluSq2	SINE,Alu
chr6	26413368	T	G	0.01000	BTN3A1	+	FALSE
chr1	10003320	G	A	0.00168	LZIC,NMNAT1	+,-	FALSE
chr16	57505635	G	T	0.00974	POLR2C	+	FALSE
chr1	117532790	C	T	0.00981	PTGFRN	+	FALSE
chr1	207247478	C	T	0.00995	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr1	6583066	T	C	0.00209	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	144852203	T	G	0.00518	NBPF20,PDE4DIP	+,-	FALSE
chr1	205272926	C	T	0.00690	NUAK2	-	FALSE
chr17	28575454	A	C	0.00470	BLMH	-	FALSE
chr1	27332852	C	T	0.00829	FAM46B	-	FALSE
chr6	52365328	T	G	0.00983	TRAM2	-	FALSE	(T)n	SINE,Alu
chr3	40577745	A	G	0.00044	ZNF621	+	TRUE	AluSz	SINE,Alu
chr1	33149486	A	G	5.00374E-05	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr4	2841802	A	G	0.00016	SH3BP2	+	TRUE	AluJb	SINE,Alu
chr1	161930908	G	A	0.00083	ATF6	+	FALSE
chr1	120611964	G	C	0.00211	NOTCH2	-	FALSE
chr2	37328097	T	C	0.00018		.	FALSE
chr2	207146631	C	A	9.52905E-05	ZDBF2	+	FALSE
chr1	25893927	A	G	0.00081	LDLRAP1	+	FALSE
chr1	118066459	A	G	0.00788	MAN1A2	+	FALSE
chr1	10437995	G	A	0.00427	KIF1B	+	FALSE	AluSg	SINE,Alu
chr1	21793735	C	G	0.00099	NBPF3	+	FALSE
chr1	28920944	A	G	0.00446	RAB42	+	TRUE	AluSx	SINE,Alu
chr7	99055940	T	C	0.00289	ATP5J2-PTCD1,ATP5J2	-	FALSE

RBP	STAU1
Knock-Method	shRNA
RBP Family	dsrm
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR777EDL
Platform	HiSeq
Pubmed ID	32252787

STAU1 - Target Gene Network