Dataset Overview
RBP
DDX5
Knock-Method
shRNA
RBP Family
DEAD
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR808FBR
Platform
HiSeq
Pubmed ID
32252787
DDX5 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of DDX5
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
10.57
23.4
1.47014
1.28888E-50
1.32055E-48
A1CF
35.02
49.0
0.76467
2.70198E-25
9.04103E-24
A2M
3329.06
4046.28
0.52092
1.28906E-14
1.96739E-13
A4GALT
0.96
0.17
-2.13339
1.06792E-09
9.72761E-09
AADAC
0.23
1.93
3.08871
8.13299E-20
1.86946E-18
AADAT
6.56
3.79
-0.31751
0.00835
0.02035
AAED1
4.53
3.46
-0.48112
5.35653E-05
0.00023
AAMDC
9.98
11.66
0.41604
0.00708
0.01766
AARS
47.64
35.1
-0.24501
0.01139
0.02661
AASDHPPT
13.65
15.2
0.32854
3.42452E-05
0.00015
Showing 1 to 10 of 7,009 entries
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Function Analysis of Target Genes of DDX5
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABI1
27047990_27048164_27040526_27040712_27054146_27054247
0.00319
-0.212
DataSet_01_443
View details
ABI1
27047990_27048167_27040526_27040712_27054146_27054247
0.00350
-0.166
DataSet_01_443
View details
ACACA
35646319_35646430_35641738_35641871_35687112_35687365
0.00856
-0.191
DataSet_01_443
View details
ACADSB
124797244_124797363_124793871_124794031_124799981_124800188
0.00006
0.06
DataSet_01_443
View details
ADAM9
38869176_38869235_38865404_38865502_38871483_38873538
0.00347
-0.04
DataSet_01_443
View details
AFMID
76201683_76201819_76198783_76198832_76202026_76202131
0.00184
-0.067
DataSet_01_443
View details
AFP
74320952_74321007_74319549_74319614_74321347_74321891
0.00001
-0.01
DataSet_01_443
View details
AFP
74313178_74313393_74309067_74309161_74315051_74315184
0.00002
-0.02
DataSet_01_443
View details
AFP
74310709_74310839_74309063_74309161_74315051_74315184
0.00002
-0.02
DataSet_01_443
View details
AFP
74313330_74313393_74309063_74309161_74315051_74315184
0.00296
-0.017
DataSet_01_443
View details
Showing 1 to 10 of 164 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACADM
76216135_76216231_76226806_76227055_76215103_76215244
0.00000
-0.149
DataSet_01_443
View details
ACAT2
160188036_160188218_160189542_160189660_160183950_160184085
0.00000
-0.154
DataSet_01_443
View details
ACSS3
81532909_81533044_81536885_81537026_81528594_81528783
0.00039
0.116
DataSet_01_443
View details
ADAM9
38940486_38940592_38948777_38948865_38940159_38940240
0.00240
-0.082
DataSet_01_443
View details
AFMID
76200908_76200981_76201683_76201819_76198783_76198832
0.00424
0.171
DataSet_01_443
View details
AFP
74309063_74309161_74313178_74313393_74303890_74304023
0.00000
0.018
DataSet_01_443
View details
AFP
74306318_74306530_74309067_74309161_74303842_74304023
0.00223
-0.006
DataSet_01_443
View details
AFP
74306318_74306530_74313178_74313393_74303890_74304023
0.00265
0.064
DataSet_01_443
View details
AHSG
186336351_186336426_186337645_186337729_186334975_186335139
0.00000
0.009
DataSet_01_443
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AHSG
186336300_186336426_186337645_186337729_186334975_186335139
0.00000
0.017
DataSet_01_443
View details
Showing 1 to 10 of 78 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
APEX1
20923736_20923932_20923736_20923862_20924072_20924260
0.00850
0.026
DataSet_01_443
View details
DIEXF
210006529_210006738_210006529_210006703_210008419_210008508
0.00439
0.298
DataSet_01_443
View details
MYL6
56552467_56553514_56552467_56552495_56553758_56553937
0.00001
-0.038
DataSet_01_443
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OS9
58112775_58114046_58112775_58112965_58114188_58114301
0.00000
-0.178
DataSet_01_443
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PIGA
15349337_15350114_15349995_15350114_15344035_15344168
0.00570
0.436
DataSet_01_443
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U2AF2
56180448_56180547_56180448_56180535_56180809_56181058
0.00452
0.096
DataSet_01_443
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Showing 1 to 6 of 6 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AARS
70291935_70292147_70291935_70292120_70292882_70293089
0.00350
0.071
DataSet_01_443
View details
AC007319.1
188419002_188419120_188419043_188419120_188412270_188412434
0.00910
-0.156
DataSet_01_443
View details
ANO9
428087_428247_428087_428199_428357_428394
0.00983
0.212
DataSet_01_443
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APOA2
161192707_161192840_161192707_161192784_161193139_161193215
0.00060
-0.013
DataSet_01_443
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APOA2
161192707_161193056_161192707_161192784_161193139_161193215
0.00203
-0.026
DataSet_01_443
View details
APRT
88875876_88876248_88875876_88876114_88876477_88876556
0.00622
-0.11
DataSet_01_443
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AUP1
74754067_74754272_74754067_74754186_74754374_74754490
0.00959
-0.03
DataSet_01_443
View details
DDX5
62496666_62498187_62496666_62496891_62498279_62498341
0.00000
-0.274
DataSet_01_443
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FN1
216236631_216237098_216236631_216237023_216238044_216238134
0.00014
-0.021
DataSet_01_443
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FN1
216236631_216237098_216236631_216236738_216238044_216238134
0.00018
-0.008
DataSet_01_443
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Showing 1 to 10 of 26 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AKR1C2
5041391_5042858_5041391_5041469_5042741_5042858
0.00557
0.036
DataSet_01_443
View details
ANKZF1
220098854_220100034_220098854_220099010_220099547_220100034
0.00876
-0.104
DataSet_01_443
View details
APEX1
20923736_20924260_20923736_20923862_20924072_20924260
0.00728
0.045
DataSet_01_443
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ARL6IP4
123466503_123467085_123466503_123466621_123467015_123467085
0.00730
0.013
DataSet_01_443
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BHLHE40
5021646_5022093_5021646_5021716_5021985_5022093
0.00274
0.039
DataSet_01_443
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C17orf76-AS1
16342894_16343567_16342894_16343017_16343498_16343567
0.00506
0.071
DataSet_01_443
View details
CPSF3L
1255835_1256473_1255835_1255909_1256375_1256473
0.00750
0.106
DataSet_01_443
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CPSF7
61183576_61183991_61183576_61183634_61183835_61183991
0.00938
-0.039
DataSet_01_443
View details
DCAF7
61666361_61671628_61666361_61666599_61671564_61671628
0.00246
-0.11
DataSet_01_443
View details
DDX5
62496666_62498187_62496666_62496891_62498127_62498187
0.00789
0.075
DataSet_01_443
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Showing 1 to 10 of 20 entries
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
16892918
T
C
0.00590
NBPF1
-
FALSE
chr1
10043043
A
G
0.00529
NMNAT1
+
TRUE
AluSc
SINE,Alu
chr1
36644564
C
T
1.56500E-06
MAP7D1
+
FALSE
chr1
28661656
A
G
0.00012
MED18
+
TRUE
AluSg
SINE,Alu
chr1
179813613
T
C
7.15786E-05
TOR1AIP2
-
FALSE
chr1
6282315
T
C
0.00508
ICMT
-
TRUE
AluSz
SINE,Alu
chr1
11979809
A
C
0.00744
KIAA2013
-
FALSE
chr1
154454628
T
C
0.00099
SHE
-
TRUE
AluSq2
SINE,Alu
chr1
900719
T
A
0.00436
KLHL17
+
FALSE
(TTTA)n
SINE,Alu
chr1
10521254
T
C
0.00640
DFFA
-
TRUE
AluY
SINE,Alu
Showing 1 to 10 of 360 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression