Dataset Overview
RBPSART3
Knock-MethodshRNA
RBP FamilyRRM_1
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR011BBS
PlatformHiSeq
Pubmed ID32252787

SART3 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of SART3
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of SART3


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr145976723TC0.00239MMACHC,PRDX1+,-FALSE
chr314526656AG0.00189SLC6A6+FALSE
chr110518797TC0.00510.FALSEAluSx1SINE,Alu
chr19643028AG0.00017.FALSEAluSxSINE,Alu
chr162882267GC0.00252ZG16B+FALSE
chr63022544TC0.00440HTATSF1P2-TRUEAluJrSINE,Alu
chr388199298TC0.00048C3orf38+FALSE
chr1153617973AG4.00129E-07CHTOP+FALSE
chr488059194CT0.00681AFF1+FALSE
chr349315592TC0.00127USP4-FALSE
chr3112299732AG0.00189SLC35A5+FALSE
chr2189877305TC0.00612COL3A1+FALSE
chr9133579734AG0.00129EXOSC2+TRUEAluSx3SINE,Alu
chr133149414AG0.00990SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr110517659TC0.00516.FALSEAluSx1SINE,Alu
chr237328082TC1.18454E-08.FALSE
chr1176176230GA0.00168RFWD2-FALSE
chr135319550CT0.00781SMIM12-FALSEAluSgSINE,Alu
chr2143638993CG0.00016KYNU+FALSE
chr120238574CT6.32696E-05OTUD3+FALSE
chr299812817AG0.00018MRPL30+TRUEAluJbSINE,Alu
chr7137612915GA0.00057CREB3L2-FALSE
chr1184761162TC0.00685FAM129A-TRUEAluJoSINE,Alu
chr339452123GA0.00093RPSA+FALSE
chr5478174CT0.00392SLC9A3,LOC100288152+,-FALSE
chr1542861705AG0.00518HAUS2+TRUEAluJbSINE,Alu
chr138327545TC0.00602INPP5B-TRUEAluSx3SINE,Alu
chr167874731TC0.00145SERBP1-TRUEAluSx3SINE,Alu
chr652860422GC0.00024.FALSE7SKSINE,Alu
chr3156258255TC0.00059SSR3-TRUEAluYk3SINE,Alu
chr1148556790TA0.00728.FALSE
chr1246577921GT0.00306SLC38A1-FALSE
chr717384437AG0.00192AHR+TRUEAluSxSINE,Alu
chr2136542427TA0.00075UBXN4+FALSEL1ME4bSINE,Alu
chr11593023GC2.84325E-05CDK11B,SLC35E2B-FALSE
chr285772404CA0.00015GGCX-FALSE
chr3195963500CT0.00014.FALSE
chr110517623TC0.00664.FALSEAluSx1SINE,Alu
chr145975331AG0.00081MMACHC+TRUEAluSg7SINE,Alu
chr116933327CT6.62916E-05NBPF1-FALSE
chr5170837892CA0.00725.FALSE
chr2105964472CT0.00398C2orf49+FALSE(TTTCTCC)nSINE,Alu
chr120976075TC0.00135PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr1688784415TC0.00750PIEZO1-TRUEAluSx3SINE,Alu
chr136068325TC0.00746PSMB2-TRUEAluScSINE,Alu
chr269690885TC0.00970AAK1-TRUEAluSx3SINE,Alu
chr1214524496TC0.00879PTPN14-TRUEAluSgSINE,Alu
chr147746678GC0.00374STIL-FALSE
chr1109475543AG0.00325GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr871550832TC0.00234LACTB2-AS1,LACTB2+,-FALSE
chr124296869GT0.00505.FALSEAluSgSINE,Alu
chr1158065762CT0.00310KIRREL+FALSE
chr2217366933CT2.15691E-05.FALSEAluSz6SINE,Alu
chr5125962568AG0.00015PHAX+TRUEAluSzSINE,Alu
chr3194125524CT0.00271ATP13A3-FALSE
chr110519112TC0.00333.FALSEAluSx3SINE,Alu
chr136068369TC0.00404PSMB2-TRUEAluScSINE,Alu
chr1181057874TG0.00099IER5+FALSE
chr127202812TC0.00353.FALSEAluSq2SINE,Alu
chr7152551581TA0.00313ACTR3B+FALSE
chr1236721608CT0.00286HEATR1-FALSE
chr1079552092CT0.00159DLG5-FALSE
chr5125962176AG0.00020PHAX+TRUEAluScSINE,Alu
chr2202038657AG0.00354.FALSEAluSx1SINE,Alu
chr2206987561TC0.00235.FALSEAluJbSINE,Alu
chr237331560TC0.00040.FALSEAluJbSINE,Alu
chr2232028396AG0.00701PSMD1+FALSE
chr1248175093AG0.00690SLC48A1+FALSE
chr1522969232GA0.00017CYFIP1+FALSE
chr1453242630TC0.00056GNPNAT1-TRUEAluJrSINE,Alu
chr1179044100AG0.00897FAM20B+TRUEAluSxSINE,Alu
chr1072648336CT0.00461PCBD1-FALSE(GGCCG)nSINE,Alu
chr2109401283CT0.00039RANBP2+FALSE
chr136770602TG0.00441THRAP3+FALSE(T)nSINE,Alu
chr154871709TC0.00110SSBP3-FALSE
chr127203728AT0.00528.FALSE
chr2191829133GA0.00097GLS+FALSE
chr291805938AG0.00000.FALSEMLT1H1SINE,Alu
chr110519888TC0.00666.FALSEAluJrSINE,Alu
chr116892274AT0.00371NBPF1-FALSE
chr16282298TC2.81673E-05ICMT-TRUEAluSzSINE,Alu
chr735737649GA0.00566LOC101930085+FALSEAluSzSINE,Alu
chr132833540TC0.00381BSDC1-TRUE
chr19160900TC0.00893.FALSEAluJbSINE,Alu
chrX3523058AC0.00019PRKX-FALSE(AC)nSINE,Alu
chr1160967848TC0.00200F11R-TRUEAluSpSINE,Alu
chr1061548856TC0.00067CCDC6-FALSE
chr128661736AG0.00048MED18+TRUEAluSgSINE,Alu
chr2204082516GA0.00094NBEAL1+FALSE
chr1100150196AG0.00176PALMD+TRUEAluJrSINE,Alu
chr138327586CT0.00198INPP5B-FALSEAluSx3SINE,Alu
chr2029631604GA0.00045FRG1BP+FALSE
chr641888827CG0.00936MED20-FALSE
chr738764395TC0.00139VPS41-TRUEAluSpSINE,Alu
chr154571374AG0.00280TCEANC2+TRUEAluScSINE,Alu
chr1919793168AG0.00481ZNF101+TRUEAluSzSINE,Alu
chr1218617543GA0.00291TGFB2+FALSE
chr1145375869GA0.00480NBPF20,NBPF10+FALSE
chr5154194476TA0.00611LARP1+FALSE
chr123240263GA5.22984E-05EPHB2+FALSE
chr16282237TC0.00372ICMT-TRUEAluSzSINE,Alu
chr6150046603TC0.00763NUP43-TRUEAluSq2SINE,Alu
chr729960462GA5.89775E-06SCRN1-FALSE
chr439549703TC0.00150UGDH-AS1,SMIM14+,-FALSEAluSpSINE,Alu
chr14102901023GA0.00546TECPR2+FALSE
chr232535797AG0.00910.FALSEAluJbSINE,Alu
chr121810575TC0.00827NBPF3+FALSE
chr119543457TC0.00143LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr126774224AG0.00349DHDDS+TRUEAluSz6SINE,Alu
chr2143638998GA0.00496KYNU+FALSE
chr1206516261CT0.00228SRGAP2+FALSE
chr353265766CT0.00088TKT-FALSE
chr457326875AG0.00456PAICS+TRUEAluSx1SINE,Alu
chr23607238CT0.00222RNASEH1-AS1+FALSE
chr1144598726AC0.00325NBPF20+FALSE
chr457326960AG2.00220E-09PAICS+TRUEAluSx1SINE,Alu
chr110521170TC0.00538DFFA-TRUEAluYSINE,Alu
chr5115165591TC0.00407ATG12-TRUEAluSq2SINE,Alu
chr127204447TC0.00513.FALSEAluSg7SINE,Alu
chr1161732461GT2.02182E-05FTH1-FALSE
chr314986138TC1.80576E-11FGD5-AS1-TRUEFLAM_CSINE,Alu
chr133148361GC0.00428SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr1115249843GA0.00218NRAS-FALSE
chr233046027GC0.00397TTC27+FALSE
chr3170114078AC0.00219SKIL+FALSE
chr13545196TC0.00035TPRG1L+FALSE
chr5149363273AG0.00114SLC26A2+TRUEAluJrSINE,Alu
chr21637531AG0.00664PXDN-FALSE
chr1610625108TC7.88488E-10EMP2-TRUEAluSx3SINE,Alu
chr116889413TC0.00016NBPF1-TRUEL1MC4SINE,Alu
chr1757279284AG0.00149PRR11+TRUEAluSq2SINE,Alu
chr12120898728AG0.00566GATC+TRUEAluYSINE,Alu
chr128825418AG0.00525PHACTR4+TRUEAluSgSINE,Alu
chr194423352GA0.00087CHAF1A+FALSEGA-richSINE,Alu
chr1958374130CT0.00124ZNF587+FALSE
chr12125511952AG0.00138THRIL-FALSEAluSx1SINE,Alu
chr1687440117CT1.93168E-06ZCCHC14-FALSE
chr1151095753AG0.00256GABPB2+TRUEAluSzSINE,Alu
chr111347164AC0.00667UBIAD1+FALSE
chr1114940209GT0.00177TRIM33-FALSE(T)nSINE,Alu
chr1203277243GT1.60795E-05BTG2+FALSE
chr1298943102AG0.00250TMPO+TRUEAluSzSINE,Alu
chr152816622TC6.23198E-05CC2D1B-TRUEAluSx1SINE,Alu
chr532404176CT0.00342ZFR-FALSE
chr7143003523TG2.48474E-05CASP2+FALSEAluYSINE,Alu
chr119543356TC0.00256LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr165899366AC0.00593LEPR,LEPROT+FALSE
chr1749042242TC0.00054SPAG9-TRUEAluJbSINE,Alu
chr11650797AG3.70820E-05CDK11B,CDK11A-FALSE
chr1154916602CA0.00475PBXIP1-FALSEMIRbSINE,Alu
chr286249930TC6.06022E-05LOC90784-TRUEAluJrSINE,Alu
chr1160967833TC6.62581E-12F11R-TRUEAluSpSINE,Alu
chr194342564CA0.00098DNTTIP2-FALSE
chr153289852AG0.00228ZYG11B+TRUEFRAMSINE,Alu
chr1156044213GT7.72130E-05MEX3A-FALSE(T)nSINE,Alu
chr111782984AG0.00542.FALSEAluSxSINE,Alu
chr1143189476AG0.00160LOC102723769-FALSE
chr124289896TG0.00051PNRC2+FALSE
chr2178406769AT0.00416AGPS+FALSE
chr232535691AG0.00023.FALSEAluJbSINE,Alu
chr152838798TC0.00069ORC1-TRUEAluJbSINE,Alu
chr237329307TC0.00137.FALSEAluJr4SINE,Alu
chr4155457049TA0.00370PLRG1-FALSEL2d2SINE,Alu
chr1224380498AG6.58460E-05DEGS1+TRUEAluSxSINE,Alu
chr286364710TC0.00273PTCD3+FALSE
chr5110463621GT0.00786WDR36+FALSE(T)nSINE,Alu
chr1474524774TC0.00906BBOF1,ALDH6A1+,-FALSEAluSc8SINE,Alu
chr985861582TA0.00604FRMD3-FALSE(TC)nSINE,Alu
chr1591044380GC0.00453IQGAP1+FALSE
chr133148362AT0.00870SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr6159395409TC0.00136.FALSE
chr333430398TA0.00025UBP1-FALSE
chr2203922075AG0.00561NBEAL1+FALSE
chr153288862AG0.00503ZYG11B+TRUEAluJoSINE,Alu
chr1150548904AT0.00052MCL1-FALSE
chr613788342TC0.00048MCUR1-TRUEAluSxSINE,Alu
chr11534205GA1.69659E-11FNDC10-FALSE
chr145242978AG0.00604RPS8+TRUEAluSzSINE,Alu
chr4177252238AG3.85736E-09SPCS3+TRUE
chr344790781TC0.00289KIAA1143-TRUEAluYSINE,Alu
chr7128143932AG0.00332.FALSEAluSq2SINE,Alu
chr9125609939AT0.00693.FALSE
chr310290508CT0.00682TATDN2+FALSE
chr483351845GT0.00422ENOPH1+FALSE
chr119585207GA0.00672MRTO4+FALSE
chr177759578AG4.05543E-05AK5+FALSE
chr729963082GA0.00118SCRN1-FALSE
chr1921366997AG0.00727ZNF431+TRUEAluScSINE,Alu
chr1100316589AG0.00481AGL+FALSE
chr13546132GA0.00113TPRG1L+FALSEAluSzSINE,Alu
chr123689522GT0.00570ZNF436-FALSE
chr2206986978TC0.00159.FALSEAluJrSINE,Alu
chr652860746TG0.00011.FALSE7SKSINE,Alu
chr153684924AG0.00913C1orf123-FALSEL1MA5ASINE,Alu
chr1063852210CT0.00324ARID5B+FALSE
chr1149581866CG0.00774LINC00623,LINC00869,LOC103091866+FALSEL2bSINE,Alu
chr1277438436TC0.00187E2F7-FALSE
chr1214524566TC0.00040PTPN14-TRUEAluSgSINE,Alu
chr3122283287TC8.96368E-06DTX3L,PARP9+,-FALSE
chr3160219829CT0.00654KPNA4-FALSE(TA)nSINE,Alu
chr110521254TC0.00023DFFA-TRUEAluYSINE,Alu
chr116889575TC0.00969NBPF1-TRUE
chr3122291688AG0.00597DTX3L+FALSEAluSzSINE,Alu
chr116929327CT0.00646NBPF1-FALSEERVL-E-intSINE,Alu
chr579923360TC0.00727DHFR-TRUEAluJrSINE,Alu
chr2176789423CA0.00441LNPK-FALSEMSTB1SINE,Alu
chr2174090631AC0.00038ZAK,MLK7-AS1+,-FALSE
chr345960556CT0.00500FYCO1-FALSE
chr2233199107CT0.00675DIS3L2+FALSE
chr2217366194CA0.00359.FALSE
chr153359187AG0.00813ZYG11A+TRUEAluSxSINE,Alu
chr1104097685CT0.00028RNPC3,AMY2B+FALSE
chr1958375707AG0.00156ZNF587+TRUEAluSgSINE,Alu
chr5177023119TA0.00295TMED9+FALSE
chr2045839074AT0.00019ZMYND8-FALSE(T)nSINE,Alu
chr1109476363AG0.00172GPSM2,CLCC1+,-FALSE
chr110517276TC0.00779.FALSEAluJrSINE,Alu
chr1200521412GA0.00292KIF14-FALSE
chr1210004199CG0.00531DIEXF+FALSE
chr146117185CT0.00714GPBP1L1-FALSE
chr344791569TC0.00685KIAA1143-TRUEAluJrSINE,Alu
chr1114455907GA0.00705DCLRE1B+FALSE
chr132661600CT0.00584TXLNA+FALSE(T)nSINE,Alu
chr1139233CA0.00653LOC729737-FALSE
chr2132481526CA0.00040C2orf27A+FALSE
chr3195963397GA0.00037.FALSE
chr237331750TC0.00067.FALSEAluJbSINE,Alu
chr1667715404TC0.00102GFOD2-TRUEAluSzSINE,Alu
chr1757281021AG1.37320E-05PRR11+TRUEAluSzSINE,Alu
chr1134379275TC0.00994ABTB2-FALSE
chr5177019207TG0.00584TMED9+FALSE
chr237330606TC0.00136.FALSEAluSq2SINE,Alu
chr624720534TC0.00053.FALSE
chr4154257510AC0.00121TRIM2+FALSE(A)nSINE,Alu
chr11344998AG0.00235.FALSEAluSgSINE,Alu
chr194351063AT0.00188GCLM-FALSE
chr1120163831AG0.00706ZNF697-FALSE
chr1326500AG0.00189.FALSE
chr2174090635TA0.00138ZAK,MLK7-AS1+,-FALSE
chr136851360GA0.00578STK40-FALSE
chr5122165482CT0.00367SNX2+FALSE(AC)nSINE,Alu
chr117733268TC0.00472RCC2-FALSE
chr3138121198CT0.00076MRAS+FALSE
chr1145512098AG0.00707NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr145244053AG0.00621RPS8+FALSE
chr1689627988GT5.83717E-06RPL13+FALSE
chr136031860GT0.00564NCDN+FALSE
chr299812988AG0.00474MRPL30+TRUEAluJbSINE,Alu
chr154692341TC0.00045SSBP3-FALSE(T)nSINE,Alu
chr140537942AC0.00955CAP1+FALSE(A)nSINE,Alu
chr1168213516AG0.00233.FALSEAluSx1SINE,Alu
chr128661656AG0.00319MED18+TRUEAluSgSINE,Alu
chr12133297974AG6.19654E-10PGAM5+TRUEAluJoSINE,Alu
chr1146643580GA0.00113PRKAB2-FALSE
chr189518120AG0.00453GBP1-FALSE
chr227293349CT0.00503AGBL5,OST4+,-FALSE
chr123636277AT0.00295HNRNPR-FALSE
chr63154871AC7.50591E-06TUBB2A-FALSE
chr1668962CT0.00852.FALSE
chr115990929CA0.00202.FALSEAluSx3SINE,Alu
chr1176733945AT0.00931ACER3+FALSEA-richSINE,Alu
chr2198416734AT0.00257HSPE1-MOB4,MOB4+FALSE
chr167874731TC0.00125SERBP1-TRUEAluSx3SINE,Alu
chr2242512159AG0.00243BOK+FALSE
chr110519932TC0.00710.FALSEAluJrSINE,Alu
chr1264842974CA0.00925.FALSEAluSzSINE,Alu
chr119934839AG0.00605MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr1145688664AT0.00013NBPF20,NBPF10,RNF115+FALSE
chr16583538TC0.00455NOL9-TRUEAluSqSINE,Alu
chr125894467AT0.00136LDLRAP1+FALSEMIRbSINE,Alu
chr124864008AG0.00601.FALSE
chr1116235186AG0.00054VANGL1+FALSE
chr3172224303AG0.00524TNFSF10-FALSE
chr19427842AG0.00923SPSB1+FALSE
chr2206980072GA1.35396E-05.FALSEMLT1A1SINE,Alu
chr119586455AG0.00772MRTO4+TRUEAluSzSINE,Alu
chr2204055626GT0.00130NBEAL1+FALSE
chr1175116734CA0.00453RPS3+FALSE
chr399463810GT0.00599MIR548G,COL8A1+,-FALSE
chr127992824GA0.00025IFI6-FALSE
chr1179041705AT0.00068FAM20B+FALSE
chr2206987731TC0.00731.FALSEAluJbSINE,Alu
chr1212796592AC0.00801CREBL2+FALSE
chr1741144251TG0.00014RUNDC1+FALSE
chr3156258319TC0.00909SSR3-TRUEAluYk3SINE,Alu
chr5149829071TC0.00360RPS14-FALSE
chr14103372464CA0.00577TRAF3+FALSE(AC)nSINE,Alu
chr111084105TA0.00116TARDBP+FALSE
chr193307479CA0.00019FAM69A,RPL5+,-FALSE
chr112058878TC0.00110MFN2+FALSE
chr299813015AG0.00235MRPL30+TRUEAluJbSINE,Alu
chr123409538GA0.00292KDM1A+FALSE
chr18045340CA0.00242PARK7+FALSE
chr1144931330CT0.00194NBPF20,PDE4DIP+,-FALSE
chr140537940AC0.00155CAP1+FALSE(A)nSINE,Alu
chr564097145CG0.00361CWC27+FALSE
chr333185522CA1.53330E-10CRTAP+FALSEL2aSINE,Alu
chr5178224547AG0.00064AACSP1-FALSE
chr153291420AG0.00011ZYG11B+TRUEAluJrSINE,Alu
chr8100890376GT0.00920COX6C-FALSE
chr1145284883AG0.00329NBPF20,NOTCH2NL+FALSEL2aSINE,Alu
chr744841646AC0.00316PPIA+FALSEAluJrSINE,Alu
chr2112874290AT0.00455TMEM87B+FALSE
chr10120795222AT0.00193EIF3A-FALSE
chr1160967890TC0.00876F11R-TRUEAluSpSINE,Alu
chr1911560438AG7.61449E-05PRKCSH+FALSEAluSxSINE,Alu
chr11717473AC0.00925GNB1-FALSE
chr812880381AG0.00031KIAA1456+TRUEAluJoSINE,Alu
chr310192608AG0.00245VHL+TRUEAluSx1SINE,Alu
chr4128995640GA0.00567LARP1B+FALSE
chr4139966801AG0.00282NOCT+TRUEAluYj4SINE,Alu
chr1071993094TG0.00078PPA1-FALSE
chr11683565GA0.00269NADK-FALSE
chr1201846675CT0.00145IPO9+FALSE
chr119543249TC0.00559LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr187200773TC0.00098SH3GLB1+FALSE
chr2207027628AG2.96026E-05EEF1B2+FALSE
chr269685864AC0.00610AAK1-FALSE(CA)nSINE,Alu
chr16282401TC0.00026ICMT-TRUEAluSzSINE,Alu
chr115394279GC0.00215KAZN+FALSE
chr2170497653TG0.00587.FALSE

Differential Expression Gene Analysis