Dataset Overview
RBP
RBM27
Knock-Method
shRNA
RBP Family
PWI
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR222SMI
Platform
HiSeq
Pubmed ID
32252787
RBM27 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of RBM27
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1CF
29.82
17.79
-0.58659
1.63599E-11
2.81827E-10
AAR2
20.83
26.55
0.21199
0.01479
0.03440
AARS
50.74
50.28
-0.20436
0.03833
0.07695
AARS2
6.39
8.14
0.20677
0.04883
0.09416
AASS
10.55
9.47
-0.25154
0.02830
0.05961
AATK
2.13
2.53
0.38170
0.01821
0.04103
ABCA1
19.68
16.95
-0.34035
1.16362E-05
6.35784E-05
ABCA11P
3.52
5.45
0.52013
0.00039
0.00150
ABCA3
1.02
1.79
0.81518
0.00013
0.00057
ABCA5
6.23
4.84
-0.37829
0.00156
0.00494
Showing 1 to 10 of 7,043 entries
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Function Analysis of Target Genes of RBM27
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACSF2
48541886_48541960_48541578_48541655_48548388_48548761
0.00247
0.122
DataSet_01_446
View details
ACSL4
108926364_108926510_108926041_108926125_108939372_108939425
0.00999
-0.036
DataSet_01_446
View details
ACSS1
25000645_25000783_24995773_24995866_25002024_25002172
0.00478
-0.2
DataSet_01_446
View details
ADD1
2928365_2928402_2927740_2927839_2929897_2931054
0.00698
0.045
DataSet_01_446
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ADD1
2928368_2928402_2927740_2927839_2929897_2931789
0.00392
0.055
DataSet_01_446
View details
AHSG
186337645_186337863_186336324_186336426_186338374_186339089
0.00000
-0.034
DataSet_01_446
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AHSG
186337645_186337702_186336285_186336426_186338374_186339089
0.00131
-0.452
DataSet_01_446
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AHSG
186336079_186336280_186334975_186335139_186337645_186337729
0.00433
-0.154
DataSet_01_446
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ALB
74270837_74270890_74270003_74270123_74272345_74272478
0.00000
0.023
DataSet_01_446
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ALDOA
30077196_30077248_30075744_30075826_30078554_30078687
0.00887
0.053
DataSet_01_446
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Showing 1 to 10 of 104 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABLIM1
116207638_116207779_116211382_116211430_116205070_116205162
0.00000
-0.228
DataSet_01_446
View details
AC005077.12
75730549_75730732_75733402_75733593_75729215_75729274
0.00686
-0.274
DataSet_01_446
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ACLY
40052872_40052902_40054001_40054092_40049285_40049427
0.00838
0.106
DataSet_01_446
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AFTPH
64800079_64800202_64806619_64806680_64796756_64796813
0.00092
0.292
DataSet_01_446
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AHSG
186336079_186336280_186336300_186336426_186334975_186335139
0.00012
-0.123
DataSet_01_446
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AHSG
186336079_186336280_186336285_186336426_186334975_186335139
0.00015
-0.122
DataSet_01_446
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AHSG
186336079_186336280_186336324_186336426_186334975_186335139
0.00274
0.495
DataSet_01_446
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ALB
74272345_74272478_74274310_74274522_74270832_74270890
0.00000
0.144
DataSet_01_446
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ALB
74272345_74272478_74275071_74275204_74270832_74270890
0.00000
0.117
DataSet_01_446
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ALB
74275071_74275140_74275140_74275204_74274354_74274522
0.00010
0.062
DataSet_01_446
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Showing 1 to 10 of 80 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
C17orf76-AS1
16342640_16343017_16342640_16342728_16343498_16343567
0.00724
0.052
DataSet_01_446
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FKBP10
39975781_39976301_39975781_39975927_39976520_39976713
0.00473
-0.051
DataSet_01_446
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FXYD2
117694876_117695459_117695368_117695459_117693393_117693432
0.00482
0.13
DataSet_01_446
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HNRNPH3
70098259_70098444_70098259_70098399_70098896_70098983
0.00997
-0.081
DataSet_01_446
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HNRNPH3
70098259_70098426_70098259_70098399_70098896_70098983
0.00119
-0.153
DataSet_01_446
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LINC00338
75084830_75085067_75084830_75084959_75085234_75085353
0.00404
-0.155
DataSet_01_446
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MRPS21
150266288_150266372_150266288_150266302_150266754_150266869
0.00455
-0.238
DataSet_01_446
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NAT9
72772405_72772470_72772447_72772470_72771760_72771846
0.00657
-0.207
DataSet_01_446
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PHC2
33799690_33799893_33799785_33799893_33797875_33798005
0.00154
-0.135
DataSet_01_446
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PPM1H
63225863_63226059_63225893_63226059_63195595_63195940
0.00735
0.218
DataSet_01_446
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Showing 1 to 10 of 12 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
APOA1
116707794_116707865_116707794_116707847_116708060_116708141
0.00469
-0.5
DataSet_01_446
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ATP8B2
154304053_154304154_154304081_154304154_154303919_154303981
0.00760
0.22
DataSet_01_446
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C17orf76-AS1
16342894_16343567_16343498_16343567_16342640_16342728
0.00872
0.048
DataSet_01_446
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C1orf63
25570040_25570715_25570040_25570124_25571640_25571792
0.00033
0.411
DataSet_01_446
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CHD4
6686950_6687097_6686950_6687083_6687194_6687303
0.00883
0.068
DataSet_01_446
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DMTF1
86800255_86800373_86800310_86800373_86795798_86795921
0.00741
0.197
DataSet_01_446
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HOMER1
78742875_78742983_78742875_78742968_78746812_78746944
0.00710
0.234
DataSet_01_446
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MTOR
11319304_11319507_11319304_11319480_11322501_11322564
0.00187
0.107
DataSet_01_446
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P4HB
79804846_79804944_79804846_79804936_79805118_79805223
0.00000
-0.881
DataSet_01_446
View details
PNPLA3
44330461_44330546_44330485_44330546_44328757_44328967
0.00405
0.193
DataSet_01_446
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Showing 1 to 10 of 21 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC093838.4
132258753_132258992_132258753_132258806_132258930_132258992
0.00570
0.115
DataSet_01_446
View details
ANO9
418719_418989_418719_418813_418887_418989
0.00789
-0.113
DataSet_01_446
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AP1G2
24034814_24035369_24034814_24034910_24035024_24035369
0.00253
-0.044
DataSet_01_446
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C17orf76-AS1
16342640_16343567_16342640_16342728_16343498_16343567
0.00204
0.018
DataSet_01_446
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C1orf63
25570040_25571792_25570040_25570124_25571640_25571792
0.00068
0.258
DataSet_01_446
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CLU
27462440_27462852_27462440_27462586_27462688_27462852
0.00195
0.016
DataSet_01_446
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DDX27
47860165_47860614_47860165_47860240_47860352_47860614
0.00620
-0.053
DataSet_01_446
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DDX41
176943288_176943836_176943288_176943448_176943725_176943836
0.00240
-0.073
DataSet_01_446
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DHRS2
24109002_24112428_24109002_24109104_24110874_24112428
0.00003
-0.093
DataSet_01_446
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DPAGT1
118971727_118972570_118971727_118971848_118972204_118972570
0.00780
0.04
DataSet_01_446
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
144917546
A
G
0.00614
NBPF20,PDE4DIP
+,-
FALSE
chr1
23833607
A
T
0.00890
E2F2
-
FALSE
chr1
145689601
A
G
0.00517
NBPF20,NBPF10
+
TRUE
AluSg
SINE,Alu
chr1
16889004
C
T
0.00878
NBPF1
-
FALSE
chr1
3545183
A
T
0.00347
TPRG1L
+
FALSE
chr1
11780004
G
T
0.00216
DRAXIN
+
FALSE
chr1
32833541
T
C
0.00903
BSDC1
-
TRUE
chr1
145512950
A
G
0.00996
NBPF20,NBPF10,RBM8A,GNRHR2
+,-
FALSE
AluSz6
SINE,Alu
chr1
19984104
A
C
0.00402
MINOS1-NBL1,NBL1
+
FALSE
chr1
171751051
A
G
0.00522
METTL13
+
FALSE
Showing 1 to 10 of 351 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression