Dataset Overview
RBP
HNRNPUL1
Knock-Method
shRNA
RBP Family
SAP
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR689ZJC
Platform
HiSeq
Pubmed ID
32252787
HNRNPUL1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of HNRNPUL1
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
11.1
5.52
-0.91267
2.61416E-05
0.00044
A1CF
47.59
41.5
0.32007
0.01276
0.05718
AAGAB
10.36
10.97
0.39187
0.01819
0.07343
AAR2
9.53
6.53
-0.51166
0.00429
0.02558
AARS
74.14
47.2
-0.51180
8.30542E-05
0.00115
AATF
20.53
23.66
0.36138
0.01085
0.05072
AATK
1.96
1.24
-0.57765
0.02368
0.08922
ABCA2
17.71
18.95
-0.46060
0.00095
0.00816
ABCA4
1.07
0.23
-1.73408
3.98359E-06
9.32621E-05
ABCC10
8.29
6.57
-0.49246
0.00216
0.01523
Showing 1 to 10 of 4,265 entries
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Function Analysis of Target Genes of HNRNPUL1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101576820_101576953_101572774_101572901_101577064_101577241
0.00569
0.119
DataSet_01_447
View details
ABCC6
16249648_16249711_16248729_16248888_16251519_16251666
0.00073
0.261
DataSet_01_447
View details
ABHD4
23074692_23074772_23072829_23072984_23075327_23075439
0.00422
0.069
DataSet_01_447
View details
ACADM
76252384_76252482_76251717_76251959_76253181_76253260
0.00002
0.118
DataSet_01_447
View details
ACADM
76252384_76252601_76251717_76251959_76253181_76253260
0.00005
0.098
DataSet_01_447
View details
ACADM
76252384_76252539_76251717_76251959_76253181_76253260
0.00041
0.081
DataSet_01_447
View details
ACADM
76252384_76252550_76251717_76251959_76253181_76253260
0.00064
0.086
DataSet_01_447
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ACSL3
223791734_223791960_223789173_223789313_223793579_223793654
0.00140
-0.044
DataSet_01_447
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ACSL3
223791734_223791907_223789173_223789313_223793579_223793654
0.00171
-0.015
DataSet_01_447
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ADAMTS13
136303365_136303486_136302868_136303017_136304486_136304567
0.00628
-0.04
DataSet_01_447
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Showing 1 to 10 of 312 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9231839_9231927_9232234_9232411_9230296_9230453
0.00001
-0.067
DataSet_01_447
View details
ABAT
8829555_8829666_8839857_8839955_8768421_8768568
0.00001
-0.17
DataSet_01_447
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ABCC1
16149948_16150152_16162012_16162159_16146580_16146673
0.00001
-0.482
DataSet_01_447
View details
ABCC1
16208622_16208933_16215831_16216031_16205231_16205439
0.00854
0.221
DataSet_01_447
View details
ABCF1
30548182_30548296_30550170_30550284_30547707_30547782
0.00000
0.185
DataSet_01_447
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ACADM
76216135_76216231_76226806_76227055_76215103_76215244
0.00000
-0.201
DataSet_01_447
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ACADVL
7126451_7126556_7126962_7127049_7125985_7126184
0.00006
-0.083
DataSet_01_447
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ACAP3
1229781_1230008_1230097_1230196_1229469_1229579
0.00000
-0.389
DataSet_01_447
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ACSL4
108926364_108926601_108939372_108939425_108925947_108926125
0.00111
-0.047
DataSet_01_447
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ADD1
2910241_2910331_2916610_2916767_2909469_2909571
0.00000
0.183
DataSet_01_447
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Showing 1 to 10 of 193 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ANG
21156931_21157033_21156931_21157014_21161705_21161809
0.00184
0.311
DataSet_01_447
View details
APEX1
20923384_20923548_20923384_20923487_20923736_20923862
0.00351
-0.067
DataSet_01_447
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ARMC10
102724128_102724509_102724128_102724277_102727076_102727211
0.00171
0.221
DataSet_01_447
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ATP1B3
141640818_141640983_141640818_141640905_141644372_141645356
0.00719
0.545
DataSet_01_447
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AURKA
54967209_54967351_54967223_54967351_54965611_54965721
0.00542
0.38
DataSet_01_447
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BTF3
72794232_72794411_72794232_72794383_72794958_72795027
0.00401
0.009
DataSet_01_447
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C17orf76-AS1
16342640_16343017_16342640_16342728_16343498_16343567
0.00000
0.107
DataSet_01_447
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CALD1
134617738_134618828_134617738_134618141_134625842_134625988
0.00714
0.07
DataSet_01_447
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CANX
179125906_179126103_179125906_179126050_179132679_179132853
0.00141
-0.093
DataSet_01_447
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DHRS2
24113617_24113763_24113617_24113704_24114035_24114091
0.00000
-0.087
DataSet_01_447
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Showing 1 to 10 of 34 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACIN1
23533313_23533466_23533313_23533430_23533563_23533686
0.00028
-0.121
DataSet_01_447
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ACTG1
79478928_79479168_79478928_79479141_79479257_79479386
0.00267
-0.019
DataSet_01_447
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AP1G2
24031170_24031275_24031170_24031262_24031496_24031624
0.00658
0.042
DataSet_01_447
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AP1G2
24031170_24031394_24031170_24031262_24031496_24031624
0.00932
0.056
DataSet_01_447
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APOA2
161193139_161193247_161193139_161193215_161193384_161193418
0.00391
0.037
DataSet_01_447
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AURKB
8110493_8110688_8110493_8110685_8110888_8110943
0.00385
0.102
DataSet_01_447
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BCLAF1
136596980_136597646_136596980_136597127_136599002_136599914
0.00516
-0.065
DataSet_01_447
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BSDC1
32849430_32849649_32849430_32849598_32852379_32852496
0.00504
0.115
DataSet_01_447
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C17orf76-AS1
16342894_16343567_16343498_16343567_16342640_16342728
0.00000
0.099
DataSet_01_447
View details
C1orf63
25570040_25570715_25570040_25570124_25571640_25571792
0.00037
0.381
DataSet_01_447
View details
Showing 1 to 10 of 54 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCD4
74759450_74759951_74759450_74759572_74759856_74759951
0.00801
-0.166
DataSet_01_447
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ACTB
5567911_5569031_5567911_5568350_5568791_5569031
0.00199
0.01
DataSet_01_447
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ACTB
5567634_5568350_5567634_5567816_5567911_5568350
0.00702
0.007
DataSet_01_447
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ACTG1
79477952_79478652_79477952_79478134_79478213_79478652
0.00482
0.009
DataSet_01_447
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AHCY
32878137_32878444_32878137_32878255_32878356_32878444
0.00716
0.011
DataSet_01_447
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AKAP8L
15514285_15514526_15514285_15514366_15514468_15514526
0.00908
-0.162
DataSet_01_447
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AP1G2
24034814_24035369_24034814_24034910_24035024_24035369
0.00003
-0.057
DataSet_01_447
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AP1G2
24031170_24031624_24031170_24031262_24031496_24031624
0.00731
0.045
DataSet_01_447
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APEX1
20923384_20923862_20923384_20923487_20923736_20923862
0.00182
-0.064
DataSet_01_447
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ARAP1
72407593_72408240_72407593_72407699_72408027_72408240
0.00006
-0.046
DataSet_01_447
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
116234313
A
G
0.00262
VANGL1
+
FALSE
chr1
10519936
T
C
0.00029
.
FALSE
AluJr
SINE,Alu
chr1
89299658
G
A
0.00779
PKN2
+
FALSE
chr1
1447756
G
C
0.00354
ATAD3A
+
FALSE
chr1
28662254
A
G
0.00052
MED18
+
TRUE
AluSq2
SINE,Alu
chr1
152187945
C
T
9.69718E-05
HRNR
-
FALSE
(GCCAGA)n
SINE,Alu
chr1
32385071
T
A
0.00436
PTP4A2
-
FALSE
chr1
113672616
A
G
0.00940
.
FALSE
AluJb
SINE,Alu
chr1
179326847
A
G
0.00512
SOAT1
+
TRUE
AluJo
SINE,Alu
chr1
16889624
T
C
0.00614
NBPF1
-
TRUE
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression