Dataset Overview
RBPRBM34
Knock-MethodshRNA
RBP FamilyRRM_1
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR318HAT
PlatformHiSeq
Pubmed ID32252787

RBM34 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of RBM34
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of RBM34


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr128564252AG0.00118ATPIF1+FALSE
chr126161107AT0.00022AUNIP-FALSEAluSc8SINE,Alu
chr2128602913GA0.00230.FALSE
chr1117617705AG0.00475TTF2+FALSE
chr1629454768AG0.00564SMG1P6,BOLA2-SMG1P6-FALSE
chr1256510697GA0.00989RPL41+FALSE
chr1153587256AT0.00013S100A14-FALSE
chr1145369589TC0.00128NBPF20,NBPF10+FALSEL1MC4SINE,Alu
chr144459935TC0.00953CCDC24+FALSEAluJbSINE,Alu
chr1742876738TC0.00481GJC1-TRUEAluSz6SINE,Alu
chr425278988TC2.09007E-08PI4K2B+FALSE
chr154231849CT0.00812NDC1-FALSE
chr830643547TA0.00748PPP2CB-FALSE
chr1145512014AG0.00023NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr285776648TC0.00765GGCX-TRUEAluSz6SINE,Alu
chr237331019TC0.00597.FALSEAluSx1SINE,Alu
chr11647871TC0.00906CDK11B,CDK11A-FALSE
chr237075013TA0.00754STRN-FALSE
chr674346347AG4.16931E-07SLC17A5-FALSE
chr115989141CG0.00677.FALSE
chr116524869TC0.00164ARHGEF19-FALSE
chr1145311900CT0.00011NBPF20,NBPF10+FALSE
chr2128064423CT0.00063MAP3K2-FALSE
chr2192699639AG0.00017SDPR-FALSE
chr2025427885AG0.00455GINS1+TRUEAluSzSINE,Alu
chr128825830AG0.00549PHACTR4+TRUEAluSpSINE,Alu
chr344791406TC0.00598KIAA1143-TRUEAluJrSINE,Alu
chr16694574GA0.00983THAP3,DNAJC11+,-FALSE
chr45743512TC0.00045EVC+FALSE
chr16582149TC0.00173NOL9-TRUEAluSq4SINE,Alu
chr537290413TC0.00467.FALSEAluSzSINE,Alu
chr116929327CT0.00304NBPF1-FALSEERVL-E-intSINE,Alu
chr41066073TA0.00387RNF212-FALSEL1MC1SINE,Alu
chr116889624TC0.00795NBPF1-TRUE
chr110517300TC0.00011.FALSEAluJrSINE,Alu
chr7193091CT1.15297E-06FAM20C+FALSE
chr2242384368GA0.00096FARP2+FALSEAluJrSINE,Alu
chr116890484GC0.00704NBPF1-FALSE
chr11118471800TA0.00875ARCN1+FALSEAluSx3SINE,Alu
chr119543356TC0.00110LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr227315252GA0.00377KHK+FALSE
chr237331065TC0.00585.FALSEAluSx1SINE,Alu
chr1157963370CG0.00445KIRREL+FALSE
chr1610623666TC1.68352E-07EMP2-TRUEAluSpSINE,Alu
chr1144918957TA0.00484NBPF20,PDE4DIP+,-FALSE
chr152306087CT0.00022NRDC-FALSE(TCA)nSINE,Alu
chr119542458TC0.00988LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr126755643AG0.00955LIN28A+FALSEAluScSINE,Alu
chr553841241TA0.00372SNX18+FALSE
chr2234386018AG0.00299USP40-FALSE
chr1101443431CT0.00013SLC30A7+FALSEAluSq2SINE,Alu
chr2202031506AG0.00508CFLAR+TRUESVA_ASINE,Alu
chr111084345CT0.00558TARDBP+FALSE
chr19161011TC7.97270E-05.FALSEAluJbSINE,Alu
chr417804740TC0.00015DCAF16-TRUEAluSxSINE,Alu
chr3120113286CT1.47726E-06FSTL1-FALSE
chr19328102AG7.16435E-05H6PD+TRUEAluJrSINE,Alu
chr133277080CT8.00797E-06YARS-FALSELTR6ASINE,Alu
chr440138676AG0.00157N4BP2+FALSE
chr10104417856TA0.00616TRIM8+FALSE(AAT)nSINE,Alu
chr1160966352TC3.14235E-07F11R-TRUEAluSgSINE,Alu
chr1206566048GC0.00125SRGAP2+FALSE
chr152375677TC0.00542RAB3B-FALSEMIRbSINE,Alu
chr2112874290AT0.00455TMEM87B+FALSE
chr119586519AG0.00239MRTO4+TRUEAluSzSINE,Alu
chr1900721TC0.00109KLHL17+FALSE(TTTA)nSINE,Alu
chr4190864378TG0.00247FRG1+FALSEGA-richSINE,Alu
chr596368471GT3.92809E-06.FALSE
chr3179115635TC0.00453GNB4-TRUEAluSg7SINE,Alu
chr3182661952CT0.00438DCUN1D1-FALSEA-richSINE,Alu
chr1113243048CT0.00941MOV10+FALSE
chr19163096TC0.00185.FALSEFRAMSINE,Alu
chr133071043AG4.49838E-05ZBTB8A+TRUEAluSx1SINE,Alu
chr19161090AG0.00068.FALSEAluJbSINE,Alu
chr153378536TC0.00075ECHDC2-TRUEAluSpSINE,Alu
chr5125961647AG1.53189E-07PHAX+FALSEAluSz6SINE,Alu
chr124022437AG0.00342RPL11+FALSE
chr1202311040AC0.00588UBE2T-FALSE
chr8143744556TC0.00586JRK-TRUEAluJrSINE,Alu
chr146093161CT0.00628GPBP1L1-FALSE
chr1950370106TG0.00359PNKP-FALSE
chr191990450AT0.00091CDC7+FALSELFSINE_VertSINE,Alu
chr127202789TC0.00026.FALSEAluSq2SINE,Alu
chr477057501AG0.00547NUP54-FALSE
chr35259480TA5.79324E-05EDEM1+FALSE
chr333907915AG3.74419E-09PDCD6IP+FALSE
chr1205684067TC0.00499NUCKS1-FALSE
chr333038222AT0.00379GLB1-FALSE
chr310192642AG0.00217VHL+TRUEAluSx1SINE,Alu
chr564964623TC1.14652E-05SGTB-TRUEAluSx1SINE,Alu
chr124746451AG0.00683NIPAL3+TRUEAluScSINE,Alu
chr986554217CT0.00272C9orf64-FALSEAluSq2SINE,Alu
chr1144931101GA0.00012NBPF20,PDE4DIP+,-FALSE
chr119585553AG4.91829E-14MRTO4+TRUEAluSc8SINE,Alu
chr1220231484TC0.00954RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr624720271TG0.00839.FALSE
chr712675713TC0.00363SCIN+FALSE
chr2025427805AG1.54320E-07GINS1+TRUEAluSzSINE,Alu
chr1668962CT0.00852.FALSE
chr29629953CA0.00042ADAM17-FALSE
chr119953129TA0.00934MINOS1,MINOS1-NBL1+FALSE
chr2242512736GC0.00492BOK+FALSE
chr1150771703TC0.00500CTSK-FALSE
chr1175129946CT0.00466KIAA0040-FALSE(TCT)nSINE,Alu
chr128825781AG0.00166PHACTR4+TRUEAluSpSINE,Alu
chr1741133087AG0.00141RUNDC1+FALSE
chr1220870440GA0.00193C1orf115+FALSE
chr111089869AG0.00839MASP2-FALSEAluSpSINE,Alu
chr398299365TG3.92075E-11CPOX-FALSE
chr11662754TC0.00856SLC35E2-TRUEAluYSINE,Alu
chr417802772GT0.00328DCAF16-FALSEAluSzSINE,Alu
chr7129251289CT0.00808.FALSE
chr129631909AG0.00029PTPRU+FALSE
chr2176043084AG0.00801ATP5G3-FALSE
chr116913677TC0.00165NBPF1-FALSE
chr1179852074TC0.00033TOR1AIP1+FALSE
chr136068369TC0.00404PSMB2-TRUEAluScSINE,Alu
chr126802401TG4.43852E-05HMGN2+FALSE
chr1179042512AG4.06106E-05FAM20B+TRUEAluSx1SINE,Alu
chr146075663AG0.00061NASP+TRUEAluSx4SINE,Alu
chr2250745987CG0.00683PLXNB2-FALSE
chr153684924AG0.00347C1orf123-FALSEL1MA5ASINE,Alu
chr127107651AT0.00200ARID1A+FALSE(A)nSINE,Alu
chr110521126TC0.00560DFFA-TRUEAluYSINE,Alu
chr1075534488CT0.00025FUT11+FALSE
chr471859287CG0.00557DCK+FALSE
chr1183105534TC0.00424LAMC1+FALSE
chr146125880TC0.00686GPBP1L1-FALSE
chr1819445881TA0.00224MIB1+FALSE
chr115736752GA0.00170EFHD2+FALSE
chr11656557TC0.00012SLC35E2-TRUEAluSzSINE,Alu
chr535878249GA0.00421IL7R+FALSE
chr2236677546TG0.00197MYH9-FALSE
chr140537944CA0.00506CAP1+FALSE
chr111847346GC0.00547C1orf167,MTHFR+,-FALSE
chr28823952TG1.04377E-05ID2+FALSE
chr236706788CG0.00481CRIM1+FALSE
chr1145689491AG0.00694NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr1109818160TG0.00745CELSR2+FALSE
chr3197024681TC0.00018DLG1-FALSE
chr1116237273AG0.00309VANGL1+FALSE
chr1079793877CT0.00977RPS24+FALSE
chr186117191TC0.00987ZNHIT6-TRUEAluSgSINE,Alu
chr193465142TC0.00100NFIC+FALSE
chr189225976TC0.00586PKN2+FALSE
chr12125511942AG0.00596THRIL-FALSEAluSx1SINE,Alu
chr110596341CT0.00552PEX14+FALSE
chr1551294995GA0.00268AP4E1+FALSE
chr9137330714AC0.00030RXRA+FALSE
chr1160112340AG0.00374ATP1A2+TRUEAluSx3SINE,Alu
chr146829013AG0.00360NSUN4+FALSE
chrX102613351AG0.00969TCEAL9+FALSEL1ME4aSINE,Alu
chr119934839AG0.00605MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr217965390TC0.00713GEN1+FALSEL1M4SINE,Alu
chr1109475629AG0.00310GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr137949224CT7.78396E-10ZC3H12A+FALSE
chr1156878044GA9.48586E-05PEAR1+FALSE
chr1939874945TC0.00335SAMD4B+FALSE
chr1160967755CT0.00563F11R-FALSE(T)nSINE,Alu
chr642857179CA0.00492RPL7L1+FALSEAluSpSINE,Alu
chr136770621GT0.00424THRAP3+FALSE(T)nSINE,Alu
chr1746025078AG0.00021PNPO+TRUEAluScSINE,Alu
chr185113229AG0.00080SSX2IP-FALSE
chr4248713AG0.00367ZNF876P+FALSE
chr1109240642AC0.00373PRPF38B+FALSE
chr11684347CT0.00550NADK-FALSE
chr9136217449CG0.00158RPL7A+FALSE
chr310192717AG3.16601E-05VHL+TRUEAluSx1SINE,Alu
chr1168218574AG0.00148.FALSEAluSzSINE,Alu
chr133149486AG5.00374E-05SYNC,RBBP4+,-FALSEAluSx1SINE,Alu
chr570248478GA0.00229SMN1,SMN2+FALSEL1MC5aSINE,Alu
chr1145689491AG0.00701NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr119953120GA0.00027MINOS1,MINOS1-NBL1+FALSE
chr4153898316AG0.00312FHDC1+TRUEAluJoSINE,Alu
chr2202901910GA0.00963FZD7+FALSE
chr126755510AG0.00013LIN28A+TRUEAluScSINE,Alu
chr1376378459TC0.00239LMO7+FALSE
chr347386062TA4.63678E-05KLHL18+FALSE
chr6170887693GC0.00045PDCD2-FALSE
chr1937236432TC0.00333ZNF850-TRUEAluSpSINE,Alu
chr19989022AG0.00038LZIC-FALSEL1MB5SINE,Alu
chr696054540GT0.00358MANEA+FALSE
chr154692334TC0.00021SSBP3-FALSE(T)nSINE,Alu
chr841399912CA0.00056LOC102723729,GINS4+,-FALSEAluSx3SINE,Alu
chr350150360AG0.00827RBM5+TRUEAluSxSINE,Alu
chr1183105705GA0.00074LAMC1+FALSE
chr128826150AG0.00048PHACTR4+TRUEAluJbSINE,Alu
chr237331555TC0.00171.FALSEAluJbSINE,Alu
chr1145513094AG0.00633NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluSz6SINE,Alu
chr224223251AG0.00489UBXN2A+TRUEAluScSINE,Alu
chr456295161TA0.00075CLOCK-FALSE(T)nSINE,Alu
chr315115270GT0.00177RBSN-FALSE
chr5118175329TC2.47285E-05DTWD2-TRUEAluJrSINE,Alu
chr132799512AT0.00929MARCKSL1-FALSE
chr366024384GC0.00096MAGI1-FALSE
chr12109887765TG0.00091KCTD10-FALSE
chr119543247TC5.35430E-06LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr119934793GA0.00068MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr1466209686TA7.37485E-06FUT8+FALSE(TT)nSINE,Alu
chr186817074GT9.65311E-06ODF2L-FALSEL1PA7SINE,Alu
chr579279309TG0.00167MTX3-FALSE
chr126608012CA0.00564SH3BGRL3+FALSE
chr11469546GA0.00331ATAD3A+FALSE
chr124086794GT0.00028TCEB3+FALSE(T)nSINE,Alu
chr315112398TC2.78799E-05RBSN-TRUEAluSq2SINE,Alu
chr152816622TC6.23198E-05CC2D1B-TRUEAluSx1SINE,Alu
chr1117531179GA0.00116PTGFRN+FALSE
chr5149363214AG0.00040SLC26A2+TRUEAluJrSINE,Alu
chr273957124AG2.00679E-05TPRKB-FALSE
chr11594940TC0.00115CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr1100547854TG0.00080MFSD14A+FALSE
chr1687864349CA0.00981SLC7A5-FALSE
chr799006740GA0.00269BUD31+FALSE
chr2232028396AG0.00701PSMD1+FALSE
chr1953999034AG0.00282.FALSEAluSq2SINE,Alu
chr116902943TC0.00833NBPF1-FALSE
chr1145512078AG0.00099NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr178201745GT0.00140USP33-FALSE
chr1179042687AG0.00782FAM20B+TRUEAluSx1SINE,Alu
chr237328034TC1.98403E-05.FALSE
chr8128944720GT0.00751PVT1+FALSE
chr11647902AT0.00191CDK11B,CDK11A-FALSE
chr3141668758TC2.84489E-05TFDP2-TRUEAluSzSINE,Alu
chr186049364AG0.00207CYR61+FALSE
chr4152020779GT0.00925RPS3A+FALSE
chr128662254AG0.00505MED18+TRUEAluSq2SINE,Alu
chr116890155CT0.00388NBPF1-FALSE
chr121100856AC0.00010HP1BP3-FALSE(AC)nSINE,Alu
chr1220323448CT0.00223RAB3GAP2-FALSE
chr133148282AG0.00825SYNC,RBBP4+,-FALSEAluSgSINE,Alu
chr177760704AG0.00297NAA38-FALSE
chr124785393CT0.00837NIPAL3+FALSE
chr7100031497TG0.00119MEPCE+FALSE
chr3155660873AG0.00018.FALSEAluSzSINE,Alu
chr811701429TC0.00758CTSB-TRUEAluSx1SINE,Alu
chr139988084GA0.00060BMP8A,PPIEL+,-FALSE
chr224224040AG0.00882.FALSEAluSpSINE,Alu
chr417802783TC0.00509DCAF16-TRUEAluSzSINE,Alu
chr110517300TC0.00113.FALSEAluJrSINE,Alu
chr3196670095CA1.97381E-07NCBP2-AS2+FALSE
chr1253435277GT2.75857E-05EIF4B+FALSE
chr2191069434GA0.00680HIBCH-FALSE
chr373115126AT0.00228PPP4R2+FALSE
chr1145369589TC0.00046NBPF20,NBPF10+FALSEL1MC4SINE,Alu
chr1765334828TC0.00160PSMD12-TRUEAluSqSINE,Alu
chr116112795AG0.00499FBLIM1+FALSE
chr110520684TC0.00125DFFA-TRUEAluSc8SINE,Alu
chr1100654813TC0.00352DBT-TRUEAluSzSINE,Alu
chr128662212AG0.00098MED18+TRUEAluSq2SINE,Alu
chr4177251328CT9.41230E-05SPCS3+FALSE
chr642854580AG0.00330RPL7L1+TRUEAluScSINE,Alu
chrX123046695AG0.00054XIAP+TRUEAluSzSINE,Alu
chr237328097TC3.71887E-07.FALSE
chr11595586TC0.00206CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr674133990TC0.00201.FALSEAluYSINE,Alu
chr722984967AG0.00108FAM126A-FALSE
chr417802955TC0.00071DCAF16-FALSEAluSzSINE,Alu
chr144447004GA0.00768B4GALT2+FALSE(CAG)nSINE,Alu
chr2109401283CT0.00039RANBP2+FALSE
chr5125961204AG0.00196PHAX+TRUEAluSzSINE,Alu
chr122357435AC0.00454LINC00339+FALSE
chr1298943182AG1.41026E-08TMPO+TRUEAluSzSINE,Alu
chr1144931392GA0.00286NBPF20,PDE4DIP+,-FALSE
chr187573325CT0.00121HS2ST1+FALSE(AT)nSINE,Alu
chr1149913726TC8.62683E-05OTUD7B-TRUEMER96BSINE,Alu
chr2128063526CA0.00759MAP3K2-FALSE
chr224227417AG0.00831.FALSEAluScSINE,Alu
chr11653093AG0.00036CDK11B,CDK11A-FALSEL2SINE,Alu
chr5125961447AG0.00025PHAX+TRUEAluSz6SINE,Alu
chr517276078CA0.00011BASP1+FALSE(TC)nSINE,Alu
chr593018883AT0.00393FAM172A-FALSE(TCA)nSINE,Alu
chr128826085AG0.00212PHACTR4+TRUEAluJbSINE,Alu
chr110517526TC0.00364.FALSEAluSx1SINE,Alu
chr5121362874AG0.00022SRFBP1+TRUEFRAMSINE,Alu
chr185715978CG0.00815C1orf52-FALSE
chr118707395CA9.51875E-07RPL27A+FALSE
chr135817023GC0.00030ZMYM4+FALSE
chr1109865630CT0.00647SORT1-FALSE
chr12125512507AG0.00276.FALSEAluYSINE,Alu
chr556177872AG0.00618MAP3K1+TRUE(CAA)nSINE,Alu
chr115993514CT6.34808E-08.FALSEAluSx4SINE,Alu
chr11118915753TC8.93388E-07HYOU1-FALSE
chr110368092AC0.00945KIF1B+FALSE
chr273460310GC0.00091PRADC1-FALSE(CGGCGC)nSINE,Alu
chr285772407TA0.00232GGCX-FALSE
chr1564657530TC0.00580KIAA0101-TRUEFLAM_CSINE,Alu
chr1169101274TG0.00026ATP1B1+FALSE(T)nSINE,Alu
chr350150389AG0.00046RBM5+TRUEAluSxSINE,Alu
chr1168220529AG0.00161.FALSEAluSz6SINE,Alu
chr193603177TC0.00364MTF2+FALSE
chr1179327010AG0.00085SOAT1+TRUE
chr1946214293CT0.00137FBXO46-FALSE
chr128834586GA0.00044SNHG3,RCC1+FALSEFRAMSINE,Alu
chr1269237013AG0.00659MDM2+TRUE
chr119542433TC0.00076LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1149913733TC0.00143OTUD7B-TRUEMER96BSINE,Alu
chr8103841636TC2.19081E-06AZIN1-TRUE
chr350296329GA0.00884GNAI2+FALSE
chr145975628AG0.00465MMACHC+TRUEAluSx4SINE,Alu
chr211323078CT0.00539ROCK2-FALSE
chr1424661017GT0.00771TM9SF1-FALSE
chr1212587320TC0.00023TMEM206-FALSE
chr3195243006CA7.17300E-06PPP1R2-FALSE
chr285548074TC0.00724TGOLN2-FALSE
chr568936027GA0.00868.FALSE
chr119543349TC0.00060LOC101927895,EMC1+,-FALSEAluJbSINE,Alu

Differential Expression Gene Analysis