RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	156258230	T	C	0.00176	SSR3	-	TRUE	AluYk3	SINE,Alu
chr17	57279253	A	G	1.08987E-07	PRR11	+	TRUE	AluSq2	SINE,Alu
chr2	132481470	C	T	0.00594	C2orf27A	+	FALSE
chr1	990984	G	A	0.00018	AGRN	+	FALSE
chr2	32535873	A	G	0.00270		.	FALSE	AluJb	SINE,Alu
chr2	85773623	T	C	0.00203	GGCX	-	TRUE	AluSx1	SINE,Alu
chr1	15991645	T	C	0.00361		.	FALSE	AluSp	SINE,Alu
chr1	32697063	T	C	0.00035	EIF3I	+	FALSE	AluSp	SINE,Alu
chr1	148577409	C	A	0.00897	NBPF15	+	FALSE
chr1	10517513	T	C	0.00982		.	FALSE	AluSx1	SINE,Alu
chr1	900719	T	A	0.00436	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	67874689	T	C	0.00338	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr3	195393406	C	T	0.00690	SDHAP2	+	FALSE
chr1	51822219	G	A	0.00283	EPS15	-	FALSE
chr17	73774199	C	T	0.00056	H3F3B	-	FALSE
chr19	19791276	A	G	0.00069	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr1	145282904	A	G	0.00308	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr3	15113655	T	C	6.08503E-07	RBSN	-	TRUE	AluSz6	SINE,Alu
chr17	42879245	T	C	0.00834	GJC1	-	TRUE	AluSx1	SINE,Alu
chr1	10520331	C	T	0.00043		.	FALSE	AluSx1	SINE,Alu
chr19	9673113	T	C	0.00330		.	FALSE	AluSx3	SINE,Alu
chr1	43748051	A	G	0.00489	C1orf210	-	FALSE	L2c	SINE,Alu
chr14	75202553	A	G	0.00014	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	36068210	T	C	0.00812	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	569874	C	T	0.00072		.	FALSE
chr1	26188238	G	A	0.00148	PAQR7	-	FALSE	AluSp	SINE,Alu
chr7	29960211	C	A	0.00034	SCRN1	-	FALSE
chr1	24999463	G	T	0.00012	SRRM1	+	FALSE	(T)n	SINE,Alu
chr7	2473753	C	T	0.00806	CHST12	+	FALSE	(CCGC)n	SINE,Alu
chr4	89625427	G	C	0.00025	HERC3	+	FALSE
chr17	28575454	A	C	0.00470	BLMH	-	FALSE
chr1	205686522	G	T	0.00427	NUCKS1	-	FALSE
chr2	37429626	A	G	0.00385	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr6	42857028	A	G	0.00064	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	79109331	G	T	0.00379	IFI44L	+	FALSE	LTR26	SINE,Alu
chr3	32496328	C	A	0.00013	CMTM7	+	FALSE
chr1	1421186	C	T	0.00834	ATAD3B	+	FALSE
chr1	206579936	A	G	0.00974	SRGAP2	+	FALSE
chr1	90496700	A	G	0.00486	ZNF326	+	FALSE
chr1	26608009	T	A	0.00496	SH3BGRL3	+	FALSE
chr3	10193475	A	G	0.00110	VHL	+	TRUE	AluJr	SINE,Alu
chr1	46774813	C	G	0.00766	UQCRH	+	FALSE
chr10	75008965	T	C	0.00017	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	167396055	T	A	0.00031	POU2F1	+	FALSE
chr1	10520331	C	T	0.00060		.	FALSE	AluSx1	SINE,Alu
chr1	1668168	G	T	0.00344	SLC35E2	-	FALSE	AluSz	SINE,Alu
chr1	327441	A	G	1.08612E-09		.	FALSE
chr3	45721891	A	G	0.00163	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	16932912	T	C	0.00525	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr19	19745479	C	T	0.00175	GMIP	-	FALSE
chr4	5743512	T	C	0.00210	EVC	+	FALSE
chr17	5288078	A	G	0.00081	RABEP1	+	FALSE
chr1	10517508	T	C	0.00034		.	FALSE	AluSx1	SINE,Alu
chr1	145511962	A	G	0.00187	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	117617705	A	G	0.00475	TTF2	+	FALSE
chr3	56655865	A	G	0.00970	FAM208A	-	FALSE	(A)n	SINE,Alu
chr1	150937959	A	G	3.24660E-05	CERS2	-	FALSE	G-rich	SINE,Alu
chr5	170837890	C	A	0.00030		.	FALSE
chr8	33356827	T	A	0.00122	MAK16,TTI2	+,-	FALSE
chr1	100654765	T	C	0.00254	DBT	-	TRUE	AluSz	SINE,Alu
chr1	9644562	A	G	0.00337		.	FALSE	AluSx	SINE,Alu
chr5	68463014	G	T	0.00011	CCNB1	+	FALSE
chr22	18572729	A	G	0.00228	PEX26	+	TRUE	AluYf1	SINE,Alu
chr1	108114598	C	T	0.00863	VAV3	-	FALSE
chr12	98943096	A	G	2.86698E-09	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	1169973	G	A	0.00783	B3GALT6	+	FALSE
chr12	6601329	C	T	3.97278E-05	MRPL51	-	FALSE
chr16	10623543	T	C	0.00025	EMP2	-	TRUE	AluSp	SINE,Alu
chr2	39009427	A	G	1.04745E-05		.	FALSE	AluSx3	SINE,Alu
chr8	25272364	C	G	0.00693	DOCK5	+	FALSE
chr5	115165731	T	C	5.24208E-07	ATG12	-	TRUE	AluSq2	SINE,Alu
chr1	155214017	C	A	0.00946	GBA	-	FALSE	AluSx3	SINE,Alu
chr9	115447531	T	C	0.00164	INIP	-	TRUE	AluJb	SINE,Alu
chr1	227071525	C	T	0.00013	PSEN2	+	FALSE
chr1	148594563	G	T	0.00169	NBPF15	+	FALSE
chr1	65692499	C	T	0.00235	AK4	+	FALSE	(T)n	SINE,Alu
chr1	33145957	G	T	0.00189	SYNC,RBBP4	+,-	FALSE	(T)n	SINE,Alu
chr1	36529549	A	G	0.00806		.	FALSE	AluJr	SINE,Alu
chr1	20826786	T	A	0.00030	MUL1	-	FALSE
chr1	27678721	A	G	0.00030	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr3	38296817	G	A	3.46922E-11	OXSR1	+	FALSE
chr1	37948912	C	T	0.00084	ZC3H12A	+	FALSE
chr1	165877720	A	T	9.21169E-05	UCK2	+	FALSE
chr1	6279957	A	G	0.00814	RNF207	+	TRUE	AluSp	SINE,Alu
chr5	130536797	A	G	0.00841	LYRM7	+	TRUE	AluSx4	SINE,Alu
chr15	49283066	T	G	0.00065	SECISBP2L	-	FALSE
chr1	28826023	A	G	0.00342	PHACTR4	+	FALSE	AluJb	SINE,Alu
chr2	106510201	C	A	0.00638	NCK2	+	FALSE
chr16	23582262	T	G	0.00101	UBFD1	+	FALSE
chr5	96366330	G	C	0.00251		.	FALSE	(TG)n	SINE,Alu
chr4	103809324	A	C	0.00658	CISD2,SLC9B1	+,-	FALSE
chr11	118940957	C	G	0.00642	VPS11	+	FALSE
chr16	10623639	T	C	0.00392	EMP2	-	TRUE	AluSp	SINE,Alu
chr2	36704035	C	A	0.00012	CRIM1	+	FALSE
chr4	187647832	C	G	0.00592		.	FALSE
chr12	56510559	A	G	0.00137	RPL41	+	FALSE
chr6	29910586	G	A	1.69263E-05		.	FALSE
chr1	92946618	A	G	0.00062	GFI1	-	FALSE
chr1	12058869	C	T	0.00027	MFN2	+	FALSE
chr1	40537918	T	A	0.00773	CAP1	+	FALSE
chr20	3848225	A	G	0.00075	MAVS	+	TRUE	AluJr	SINE,Alu
chr6	143382534	C	T	0.00252	AIG1	+	FALSE
chr2	217366971	A	G	0.00616		.	FALSE	AluSz6	SINE,Alu
chr1	235272660	C	T	0.00111	TOMM20	-	FALSE	Tigger10	SINE,Alu
chr10	17275583	T	C	0.00374	VIM	+	FALSE
chr3	179306775	C	T	7.88487E-06	MRPL47	-	FALSE
chr15	83826212	C	T	0.00278	HDGFRP3	-	FALSE	(CTT)n	SINE,Alu
chr1	10519912	T	C	0.00737		.	FALSE	AluJr	SINE,Alu
chr1	237063504	A	G	0.00900	MTR	+	FALSE	L1ME3F	SINE,Alu
chr1	36032229	A	C	0.00806	NCDN	+	FALSE
chr1	33148210	A	G	0.00342	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr2	206986291	T	C	0.00143		.	FALSE	AluSz	SINE,Alu
chr1	108113839	T	C	0.00027	VAV3	-	FALSE
chr1	160967816	T	C	0.00162	F11R	-	TRUE	AluSp	SINE,Alu
chr1	36067817	T	C	0.00339	PSMB2	-	TRUE	AluSz	SINE,Alu
chr12	133334975	T	C	0.00070	ANKLE2	-	TRUE	AluSz	SINE,Alu
chr3	183533964	T	C	2.38465E-05	MAP6D1	-	FALSE
chr3	44791343	T	C	0.00220	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr3	4403537	C	T	0.00055	SUMF1	-	FALSE	MIR3	SINE,Alu
chr1	33277080	C	T	8.00797E-06	YARS	-	FALSE	LTR6A	SINE,Alu
chrX	23721424	G	C	0.00651		.	FALSE
chr1	1595078	T	C	0.00714	CDK11B,SLC35E2B	-	FALSE	AluSg	SINE,Alu
chr3	14526625	T	G	0.00414	SLC6A6	+	FALSE
chr1	25894464	G	A	0.00527	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	151288172	G	A	0.00312	PI4KB	-	FALSE
chr20	10036845	A	G	0.00110	SNAP25-AS1,ANKEF1	+,-	FALSE
chr4	39551167	T	C	0.00361	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr2	24225006	A	G	0.00078		.	FALSE	AluSx	SINE,Alu
chr15	78841543	T	A	0.00438	PSMA4	+	FALSE
chr1	16945409	T	A	0.00105	CROCCP2	-	FALSE
chr1	145291494	A	G	0.00738	NBPF20	+	FALSE	MIRb	SINE,Alu
chr4	153898736	A	G	0.00574	FHDC1	+	FALSE	AluJb	SINE,Alu
chr1	214527252	G	A	0.00181	PTPN14	-	FALSE	MADE2	SINE,Alu
chr4	39289308	G	C	0.00509	RFC1	-	FALSE
chr2	73957124	A	G	2.00679E-05	TPRKB	-	FALSE
chr1	10517527	T	C	8.32015E-05		.	FALSE	AluSx1	SINE,Alu
chr1	197128726	G	A	2.50329E-05	ZBTB41	-	FALSE
chr1	53289686	A	G	0.00222	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr2	74690039	G	A	0.00412	MOGS	-	FALSE
chr1	36068281	T	C	0.00201	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	45722047	A	G	0.00319	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	145293566	G	A	0.00103	NBPF20,NBPF10	+	FALSE
chr1	53288862	A	G	0.00503	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr3	57743171	C	T	1.04824E-07	SLMAP	+	FALSE
chr4	1982726	C	T	0.00828	WHSC1	+	FALSE
chr5	40828062	A	G	0.00733	LOC100506548	-	FALSE
chr1	144822066	A	G	0.00020	NBPF20,NBPF9	+	FALSE
chr4	120978603	G	C	0.00042		.	FALSE
chr8	61655619	C	T	0.00475	CHD7	+	FALSE
chr6	109785887	T	C	7.14632E-06	MICAL1,ZBTB24	-	TRUE	AluJr	SINE,Alu
chr1	120612194	C	G	0.00561	NOTCH2	-	FALSE	(CCG)n	SINE,Alu
chr2	70452142	T	G	0.00191	TIA1	-	FALSE
chr1	160967857	T	C	0.00032	F11R	-	TRUE	AluSp	SINE,Alu
chr1	28564252	A	G	0.00118	ATPIF1	+	FALSE
chr7	105162562	G	C	0.00096	PUS7	-	FALSE
chr5	130536847	A	G	0.00917	LYRM7	+	TRUE	AluSx4	SINE,Alu
chr1	33149486	A	G	0.00528	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	149818508	T	C	7.96693E-05		.	FALSE	MLT1D	SINE,Alu
chr1	46075663	A	G	0.00061	NASP	+	TRUE	AluSx4	SINE,Alu
chr16	57505656	T	G	0.00107	POLR2C	+	FALSE	(GGTGGG)n	SINE,Alu
chr3	196670090	G	A	0.00059	NCBP2-AS2	+	FALSE
chr1	145513094	A	G	0.00633	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr2	36706788	C	G	0.00481	CRIM1	+	FALSE
chr1	16933629	A	G	0.00299	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr5	125961455	A	G	0.00029	PHAX	+	TRUE	AluSz6	SINE,Alu
chr16	80636808	C	T	0.00881	CDYL2	-	FALSE
chr6	27860480	G	A	0.00908	HIST1H2AM	-	FALSE
chr3	15114493	T	C	2.42944E-10	RBSN	-	TRUE	AluY	SINE,Alu
chr6	33377511	T	C	5.31992E-06		.	FALSE	(TG)n	SINE,Alu
chr2	98090610	T	C	0.00832	LOC100506076	-	FALSE	L1PREC2	SINE,Alu
chr1	67874689	T	C	7.42611E-10	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr6	72012435	A	G	0.00723	OGFRL1	+	FALSE	AluSg	SINE,Alu
chr1	148004440	C	A	0.00082	NBPF8	-	FALSE
chr19	53914807	A	G	4.44644E-06	ZNF765	+	TRUE	AluSp	SINE,Alu
chr3	120113403	T	G	0.00364	FSTL1	-	FALSE
chr1	145513098	A	G	0.00067	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr5	17276742	G	A	0.00320	BASP1	+	FALSE
chr1	23381596	T	C	0.00762	KDM1A	+	FALSE
chr4	13601337	G	A	7.28365E-09	BOD1L1	-	FALSE
chr1	148023067	C	T	0.00772	NBPF8	-	FALSE
chr1	45975498	A	G	9.09033E-05	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr10	61548859	A	C	0.00011	CCDC6	-	FALSE
chr1	24862643	T	G	0.00933	RCAN3	+	FALSE
chr1	36067817	T	C	7.91657E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	40578843	A	G	0.00749	ZNF621	+	TRUE	AluJr	SINE,Alu
chr3	160283126	A	C	0.00564	KPNA4	-	FALSE
chr9	111779229	T	C	0.00269	TMEM245	-	FALSE
chr7	100804140	C	T	0.00377	AP1S1	+	FALSE
chr1	114306372	A	G	0.00443	RSBN1	-	FALSE
chr1	53291395	A	G	0.00017	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr6	122765962	T	A	0.00362	SERINC1	-	FALSE
chr1	179042482	A	G	0.00079	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	33071146	A	G	0.00899	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	118066459	A	G	0.00729	MAN1A2	+	FALSE
chr1	16892913	A	G	0.00441	NBPF1	-	FALSE
chr8	26492397	C	T	0.00709	DPYSL2	+	FALSE
chr20	25427865	A	G	0.00018	GINS1	+	FALSE	AluSz	SINE,Alu
chr1	19934793	G	A	0.00376	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	16890320	T	C	0.00045	NBPF1	-	FALSE
chr1	87811070	G	A	0.00396	LMO4	+	FALSE
chr1	214531079	A	G	0.00124	PTPN14	-	FALSE
chr3	15838717	A	C	0.00673	ANKRD28	-	FALSE	(A)n	SINE,Alu
chr1	28060574	A	G	0.00206	FAM76A	+	FALSE
chr8	42043493	G	A	0.00045	PLAT	-	FALSE	MLT2C1	SINE,Alu
chr1	16933643	A	G	0.00279	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	145282799	G	A	0.00915	NBPF20,NOTCH2NL	+	FALSE
chr12	69237013	A	G	0.00659	MDM2	+	TRUE
chr2	242291743	A	G	0.00731	SEPT2	+	FALSE
chr19	58375195	A	G	0.00080	ZNF587	+	TRUE	AluSx4	SINE,Alu
chr1	220232066	T	C	0.00673	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr15	42503333	T	C	0.00120	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr7	129251289	C	T	0.00808		.	FALSE
chr4	17802824	T	C	0.00594	DCAF16	-	TRUE	AluSz	SINE,Alu
chr2	99812988	A	G	0.00474	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	78414310	C	A	0.00067	FUBP1	-	FALSE
chr3	10192704	A	G	0.00402	VHL	+	TRUE	AluSx1	SINE,Alu
chr15	31619607	G	A	0.00887	KLF13	+	FALSE
chr1	6282400	T	C	0.00321	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	160219829	C	T	0.00654	KPNA4	-	FALSE	(TA)n	SINE,Alu
chr19	21131571	A	G	0.00120	ZNF85	+	FALSE
chr3	98518156	T	A	7.17121E-05	DCBLD2	-	FALSE
chrX	123043142	A	G	0.00045	XIAP	+	TRUE	AluSz	SINE,Alu
chr1	11119950	G	A	4.66412E-05	SRM	-	FALSE
chr19	7085418	A	G	6.02730E-06	ZNF557	+	TRUE	AluJb	SINE,Alu
chr4	57326315	A	G	0.00281	PAICS	+	TRUE	AluJr	SINE,Alu
chr9	114696428	G	T	0.00163	UGCG	+	FALSE	(TGTTTTT)n	SINE,Alu
chr1	3729182	T	C	0.00300	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	160967833	T	C	6.62581E-12	F11R	-	TRUE	AluSp	SINE,Alu
chr17	7485341	C	A	0.00701	CD68,LOC100996842	+,-	FALSE
chr11	8708789	A	G	0.00237	RPL27A	+	TRUE	AluSp	SINE,Alu
chr2	86272758	G	A	0.00489	POLR1A	-	FALSE
chr1	145282904	A	G	0.00542	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr2	109401284	G	C	0.00059	RANBP2	+	FALSE
chr17	37006214	T	C	0.00706		.	FALSE	AluSx	SINE,Alu
chr12	124146100	A	G	4.66106E-08	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr1	85785549	T	C	0.00320	DDAH1	-	FALSE
chr20	25428724	A	G	0.00033	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	100440553	A	G	0.00553	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr1	145369498	A	G	0.00700	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	53359187	A	G	0.00813	ZYG11A	+	TRUE	AluSx	SINE,Alu
chr10	24873171	G	T	0.00329	ARHGAP21	-	FALSE
chr4	4291825	C	T	1.35815E-09	LYAR	-	FALSE
chr4	6302519	G	A	0.00195	WFS1	+	FALSE
chr1	153907297	C	T	3.91411E-05	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr1	21795388	A	G	0.00732	NBPF3	+	FALSE
chr1	53291434	A	G	0.00108	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr3	73115786	T	C	0.00470	PPP4R2	+	FALSE
chr1	33148006	A	G	0.00110	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr1	33149375	A	G	0.00840	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	15989141	C	G	0.00364		.	FALSE
chr16	10625102	T	C	0.00129	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	44438961	A	G	0.00013	DPH2	+	FALSE	MER3	SINE,Alu
chr18	10691357	G	A	0.00082	PIEZO2	-	FALSE

RBP	MTPAP
Knock-Method	shRNA
RBP Family	PAP_assoc
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR631RFX
Platform	HiSeq
Pubmed ID	32252787

MTPAP - Target Gene Network