RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr4	57326126	A	G	0.00790	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	150479901	C	T	0.00228	TARS2	+	FALSE	AluSc8	SINE,Alu
chr1	27877418	G	A	0.00347	AHDC1	-	FALSE
chr17	3512398	T	C	0.00709	SHPK,TRPV1	-	TRUE	AluSx	SINE,Alu
chr12	69237057	A	G	0.00259	MDM2	+	TRUE
chr3	14986111	T	C	0.00999	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	160966352	T	C	3.14235E-07	F11R	-	TRUE	AluSg	SINE,Alu
chr7	74169234	G	T	8.95897E-05	GTF2I	+	FALSE
chr6	41567394	T	A	0.00717	FOXP4	+	FALSE
chr1	205687341	C	T	0.00494	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr1	10517290	T	C	0.00437		.	FALSE	AluJr	SINE,Alu
chr1	91990450	A	T	0.00405	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr6	57034845	G	A	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr1	144828683	C	G	3.91144E-05	NBPF20,NBPF9	+	FALSE
chr1	22855441	C	T	0.00884	ZBTB40	+	FALSE
chr1	16929148	G	A	0.00037	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr14	64951277	T	C	0.00077	ZBTB25	-	TRUE	AluSp	SINE,Alu
chr1	151955393	T	C	7.77942E-05	S100A10	-	FALSE
chr4	39549693	T	C	0.00170	UGDH-AS1,SMIM14	+,-	FALSE	AluSp	SINE,Alu
chr3	196078364	G	A	0.00290		.	FALSE	GA-rich	SINE,Alu
chr5	139931627	C	T	0.00073	SRA1	-	FALSE
chr1	205272926	C	T	0.00690	NUAK2	-	FALSE
chr1	144606838	A	G	0.00025	NBPF20	+	FALSE
chr1	26143731	A	G	0.00337	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	27202844	T	C	0.00146		.	FALSE	AluSq2	SINE,Alu
chr1	16889502	T	C	5.54778E-06	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	28661633	A	G	0.00053	MED18	+	TRUE	AluSg	SINE,Alu
chr9	132575836	A	C	0.00546	TOR1A	-	FALSE
chr1	33149266	A	G	0.00292	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr2	86947783	C	T	0.00515	RNF103-CHMP3,RMND5A	+,-	FALSE
chr16	5134599	G	C	0.00355	ALG1,EEF2KMT	+,-	FALSE
chr1	19586455	A	G	0.00296	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	10520764	T	C	0.00501	DFFA	-	TRUE	AluSc8	SINE,Alu
chr3	45267321	C	T	0.00059	TMEM158	-	FALSE
chr1	204526660	A	G	0.00478	MDM4	+	TRUE	AluSx	SINE,Alu
chr12	12618715	T	C	0.00714	BORCS5	+	FALSE
chr1	25570692	C	T	0.00095	RSRP1	-	FALSE
chr1	16933327	C	T	6.62916E-05	NBPF1	-	FALSE
chr3	124950418	T	A	0.00039	ZNF148	-	FALSE
chr6	42981525	G	C	0.00041	MEA1	-	FALSE
chr1	38275432	G	T	0.00057	MTF1	-	FALSE
chr1	28832533	G	A	0.00761	SNHG3,RCC1	+	FALSE
chr1	9160996	T	C	0.00023		.	FALSE	AluJb	SINE,Alu
chr9	19376248	A	T	0.00821		.	FALSE
chr1	179044309	A	G	0.00558	FAM20B	+	TRUE	AluSx	SINE,Alu
chr16	80636297	C	G	0.00161	CDYL2	-	FALSE
chr1	160967755	C	T	0.00563	F11R	-	FALSE	(T)n	SINE,Alu
chr2	37331555	T	C	0.00132		.	FALSE	AluJb	SINE,Alu
chr7	20178562	T	C	1.84789E-06	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr3	33185036	G	A	0.00573	CRTAP	+	FALSE	L2a	SINE,Alu
chr2	232319615	A	T	8.19218E-06	NCL	-	FALSE
chr3	42826041	T	G	0.00019	HIGD1A	-	FALSE
chr1	205739266	C	T	0.00125	RAB29	-	FALSE
chr1	179042692	A	G	4.94937E-05	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr2	37331627	T	C	0.00910		.	FALSE	AluJb	SINE,Alu
chr4	17629937	G	A	0.00795		.	FALSE	MER90	SINE,Alu
chr1	16933625	A	G	0.00536	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	36067760	T	C	1.59237E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	16901668	T	C	0.00421	NBPF1	-	FALSE
chr1	38326774	T	C	0.00664	INPP5B	-	TRUE	AluJr	SINE,Alu
chr7	6500726	A	T	0.00560	KDELR2	-	FALSE
chr12	72096318	A	G	0.00547	TMEM19	+	TRUE	AluSz6	SINE,Alu
chr4	7762675	C	T	3.92312E-07	AFAP1,AFAP1-AS1	+,-	FALSE
chr8	128944725	G	C	0.00491	PVT1	+	FALSE
chr11	68523472	T	C	0.00649	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	46828700	A	G	0.00805	NSUN4	+	FALSE
chr17	31258352	G	A	0.00417	TMEM98	+	FALSE
chr1	118166096	C	T	0.00861	FAM46C	+	FALSE
chr1	3416449	C	A	0.00748	MEGF6	-	FALSE
chr1	16932144	A	C	0.00559	NBPF1	-	FALSE
chr5	134086670	C	A	0.00585	CAMLG	+	FALSE
chr9	125609943	A	G	0.00247		.	FALSE
chr1	45976147	G	A	0.00476	MMACHC	+	FALSE	AluJr	SINE,Alu
chr2	74332840	G	C	4.77205E-06	TET3	+	FALSE
chr7	44047240	G	A	0.00588	POLR2J4,SPDYE1	+,-	FALSE
chr1	149913727	T	C	0.00721	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr1	26755291	A	G	0.00044	LIN28A	+	TRUE	AluSx1	SINE,Alu
chr1	154315369	C	T	0.00022	ATP8B2	+	FALSE
chr2	37330517	T	C	0.00324		.	FALSE	AluSq2	SINE,Alu
chr2	37478348	T	A	0.00392	PRKD3	-	FALSE
chr1	54635874	T	C	0.00334		.	FALSE	AluSx	SINE,Alu
chr3	100084432	G	A	0.00321	TOMM70	-	FALSE
chr1	6683561	C	G	0.00732	PHF13	+	FALSE
chr1	179876988	C	G	0.00047	TOR1AIP1	+	FALSE
chr1	27107948	G	A	0.00177	ARID1A	+	FALSE
chr7	99636950	A	G	0.00927	ZKSCAN1	+	FALSE	AluSx1	SINE,Alu
chr20	43343908	G	A	9.03009E-05	KCNK15-AS1,WISP2	+,-	FALSE	(GC)n	SINE,Alu
chr1	6311399	A	G	0.00126	GPR153	-	FALSE
chr1	146650091	C	A	0.00361	PDIA3P1	+	FALSE
chr3	10191943	G	A	2.29886E-07	VHL	+	FALSE
chr1	145511962	A	G	0.00091	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr11	74551853	A	C	0.00079	RNF169	+	FALSE
chr4	109733172	T	C	0.00480	COL25A1	-	FALSE
chr1	1252248	A	G	0.00503	CPSF3L	-	FALSE	AluSx	SINE,Alu
chrX	123045407	A	G	0.00153	XIAP	+	TRUE	AluJo	SINE,Alu
chr1	120267061	C	A	0.00181	PHGDH	+	FALSE
chr1	33148196	A	G	0.00054	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr2	101622889	T	A	0.00022	RPL31	+	FALSE
chr2	224622242	T	C	0.00873	AP1S3	-	TRUE	AluSx1	SINE,Alu
chr3	141879810	T	C	0.00348	GK5	-	FALSE	AluJr	SINE,Alu
chr2	37328075	T	C	0.00863		.	FALSE
chr1	110170896	T	C	0.00140	AMPD2	+	FALSE
chr3	160219829	C	T	0.00654	KPNA4	-	FALSE	(TA)n	SINE,Alu
chr1	114940228	C	T	0.00734	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	169768080	C	A	0.00980	C1orf112	+	FALSE
chr1	200522058	T	A	0.00209	KIF14	-	FALSE	AluSg	SINE,Alu
chr1	25893927	A	G	0.00081	LDLRAP1	+	FALSE
chr2	55516911	A	G	0.00719	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	177977067	A	G	0.00030	LOC730102	-	FALSE
chr1	20977907	A	G	3.34679E-05	PINK1,PINK1-AS	+,-	FALSE
chr5	145838680	A	G	0.00395	TCERG1	+	FALSE	(GCCCAG)n	SINE,Alu
chr5	40832555	A	T	5.95918E-06	RPL37	-	FALSE
chr1	33146255	C	A	0.00182	SYNC,RBBP4	+,-	FALSE
chr6	114182986	T	A	0.00316	MARCKS	+	FALSE
chr5	77655342	T	C	0.00919	SCAMP1-AS1	-	TRUE	AluSx4	SINE,Alu
chr1	36642420	T	C	0.00358	MAP7D1	+	FALSE
chr1	179072966	C	T	0.00107	ABL2	-	FALSE	MIRc	SINE,Alu
chr3	109049177	A	T	0.00044	DPPA4	-	FALSE	AluSp	SINE,Alu
chr1	101372409	T	C	0.00203	SLC30A7	+	FALSE
chr3	20025661	C	T	4.83976E-05	RAB5A,PP2D1	+,-	FALSE
chr4	141600320	A	G	0.00179	TBC1D9	-	FALSE
chr1	9329289	C	T	0.00303	H6PD	+	FALSE
chr19	11256672	T	C	9.28647E-11	SPC24	-	TRUE	AluJr4	SINE,Alu
chr3	45722253	A	G	0.00663	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	100388748	T	C	0.00445	AGL	+	FALSE
chr1	16890644	C	T	0.00174	NBPF1	-	FALSE
chr8	144940368	C	T	0.00020	EPPK1	-	FALSE
chr11	68523055	T	C	0.00524	CPT1A	-	TRUE	AluY	SINE,Alu
chr1	52520866	C	T	0.00195	TXNDC12	-	FALSE
chr1	85785557	T	A	0.00141	DDAH1	-	FALSE
chr1	55207988	G	A	0.00914	MROH7-TTC4,TTC4	+	FALSE
chr1	10520202	T	C	0.00825		.	FALSE	AluSx	SINE,Alu
chr9	131093963	A	G	0.00299	COQ4	+	TRUE	AluJo	SINE,Alu
chr1	145689537	A	G	0.00593	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	10518052	T	C	0.00791		.	FALSE	AluJr	SINE,Alu
chr10	101992298	T	C	0.00409	CWF19L1	-	TRUE	AluSq2	SINE,Alu
chr1	33145959	T	G	0.00755	SYNC,RBBP4	+,-	FALSE	(T)n	SINE,Alu
chr3	44790636	T	C	0.00083	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	19542401	T	C	0.00052	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr12	76423035	A	G	0.00025	PHLDA1	-	FALSE
chr1	16933650	A	G	0.00258	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr3	48787640	T	C	0.00320	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	244871041	T	A	0.00590	DESI2	+	FALSE
chr14	21929044	T	C	3.48024E-06	RAB2B	-	TRUE	AluSp	SINE,Alu
chr7	937828	G	A	0.00605	ADAP1	-	FALSE
chr1	144930596	C	A	0.00578	NBPF20,PDE4DIP	+,-	FALSE
chr1	6651457	G	A	0.00614	KLHL21	-	FALSE
chr1	145290818	C	G	0.00931	NBPF20	+	FALSE
chr2	24223291	A	G	0.00512	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr3	40503562	G	A	0.00017	RPL14	+	FALSE
chr1	183876182	C	T	0.00494	RGL1	+	FALSE
chr1	27212513	T	C	0.00260	GPN2	-	FALSE
chr2	55516941	C	T	0.00110	CCDC88A	-	FALSE
chr3	45960578	G	A	0.00632	FYCO1	-	FALSE
chr1	59122059	G	A	0.00476	MYSM1	-	FALSE
chr1	54691922	T	A	0.00224	SSBP3	-	FALSE
chr1	114443618	A	G	0.00910	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr4	3514695	A	G	1.35580E-12	LRPAP1	-	FALSE
chr1	10518052	T	C	7.90759E-05		.	FALSE	AluJr	SINE,Alu
chr1	159887904	A	T	8.82173E-05	TAGLN2	-	FALSE
chr2	157440644	G	C	0.00394	GPD2	+	FALSE
chr1	59246520	A	C	7.56706E-05	JUN	-	FALSE
chr1	44459935	T	C	0.00953	CCDC24	+	FALSE	AluJb	SINE,Alu
chr1	145689701	A	G	0.00765	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr2	208466270	A	G	0.00713	CREB1,METTL21A	+,-	FALSE
chr12	72182168	G	C	0.00867	RAB21	+	FALSE
chr1	569803	G	A	0.00166		.	FALSE
chr1	25889176	C	T	3.50303E-06	LDLRAP1	+	FALSE
chr19	9672943	T	C	1.63385E-06		.	FALSE	AluSx3	SINE,Alu
chr16	67715890	T	C	9.92672E-05	GFOD2	-	TRUE	AluJr	SINE,Alu
chr1	226171400	T	C	0.00359	SDE2	-	TRUE	BC200	SINE,Alu
chr1	33148698	A	G	0.00736	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr2	232319613	C	T	0.00022	NCL	-	FALSE
chr1	144604425	C	T	0.00269	NBPF20	+	FALSE
chr1	23636275	G	T	0.00258	HNRNPR	-	FALSE
chr1	225707042	T	C	4.11654E-05	ENAH	-	FALSE
chr2	11321880	C	T	0.00064	ROCK2	-	FALSE	AluSx1	SINE,Alu
chr14	100762714	T	C	0.00573	SLC25A29	-	TRUE	AluJo	SINE,Alu
chr4	119551832	G	A	0.00522	LOC729218	+	FALSE
chr3	30733690	C	A	0.00353	TGFBR2	+	FALSE
chr1	10517623	T	C	8.06723E-05		.	FALSE	AluSx1	SINE,Alu
chr5	37291386	T	C	1.33550E-08		.	FALSE	AluSx3	SINE,Alu
chr2	206983267	T	C	0.00854		.	FALSE	AluJb	SINE,Alu
chr1	67874697	T	C	4.44446E-05	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	1634860	G	T	0.00659	CDK11B,CDK11A	-	FALSE
chr1	10521238	T	C	0.00793	DFFA	-	TRUE	AluY	SINE,Alu
chr7	4809089	A	G	0.00552	FOXK1	+	TRUE	AluSx1	SINE,Alu
chr8	8099397	T	C	0.00975	FAM86B3P	+	FALSE
chr3	17201882	C	T	0.00282	TBC1D5	-	FALSE
chr2	71298486	T	C	0.00408	NAGK	+	FALSE
chr2	85133793	G	A	0.00577	TMSB10	+	FALSE
chr1	92977228	T	C	0.00206	EVI5	-	TRUE	AluJr	SINE,Alu
chr1	67874697	T	C	5.54610E-06	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	20401859	A	T	0.00930	SDC1	-	FALSE	(A)n	SINE,Alu
chr1	28939803	C	T	1.99823E-11	TAF12	-	FALSE
chr1	46033514	G	A	0.00073	AKR1A1	+	FALSE	AluYk3	SINE,Alu
chr1	97144546	A	C	0.00803		.	FALSE
chr3	15483744	A	G	0.00083	EAF1	+	FALSE
chr1	45242861	A	G	0.00911	RPS8	+	TRUE	AluSz	SINE,Alu
chr2	37479862	C	T	0.00603	PRKD3	-	FALSE
chr1	59122910	G	A	0.00251	MYSM1	-	FALSE
chr1	16958064	A	G	2.44983E-05		.	FALSE
chr1	19586455	A	G	3.44081E-06	MRTO4	+	TRUE	AluSz	SINE,Alu
chr10	79552092	C	T	0.00159	DLG5	-	FALSE
chr7	80373463	A	C	0.00399	SEMA3C	-	FALSE
chr1	109239335	G	T	0.00011	PRPF38B	+	FALSE
chr22	31375015	A	T	0.00990	TUG1	+	FALSE
chr1	16893721	A	C	0.00179	NBPF1	-	FALSE
chr1	35319550	C	T	0.00781	SMIM12	-	FALSE	AluSg	SINE,Alu
chr9	115447527	T	C	0.00200	INIP	-	TRUE	AluJb	SINE,Alu
chr3	8922054	T	C	0.00300	RAD18	-	FALSE
chr1	46077218	A	G	0.00783	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	38326643	T	C	0.00458	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	9160976	T	C	0.00015		.	FALSE	AluJb	SINE,Alu
chr1	27216740	G	A	0.00801	GPN2	-	FALSE
chr2	206986380	T	C	0.00053		.	FALSE	AluSz	SINE,Alu
chr1	90496713	A	G	0.00677	ZNF326	+	FALSE
chr1	19934793	G	A	0.00068	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr2	100897573	G	A	0.00231	LONRF2	-	FALSE
chr2	242384368	G	A	0.00031	FARP2	+	FALSE	AluJr	SINE,Alu
chr2	26613949	A	G	0.00669	EPT1	+	FALSE
chr6	52860422	G	C	0.00024		.	FALSE	7SK	SINE,Alu
chr4	39549701	T	C	0.00269	UGDH-AS1,SMIM14	+,-	FALSE	AluSp	SINE,Alu
chr1	44818525	T	C	0.00442	ERI3	-	FALSE
chr1	36024788	C	T	5.60663E-14	NCDN	+	FALSE
chr1	209605646	A	C	0.00478	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr3	15114288	T	C	7.51597E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr1	114940211	G	T	0.00925	TRIM33	-	FALSE	(T)n	SINE,Alu
chr2	55516891	G	A	2.12747E-05	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	224927968	G	A	0.00695	CNIH3	+	FALSE
chr16	10625108	T	C	7.88488E-10	EMP2	-	TRUE	AluSx3	SINE,Alu
chr14	90871942	C	A	0.00057	CALM1	+	FALSE
chr12	98942679	A	G	2.08991E-07	TMPO	+	FALSE	AluSc	SINE,Alu
chr1	11347150	C	A	0.00016	UBIAD1	+	FALSE
chr19	42375540	A	G	0.00012		.	FALSE	AluSx	SINE,Alu
chr3	66428450	G	A	0.00355	SLC25A26	+	FALSE
chrX	77083723	T	C	0.00163	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr17	53239140	C	T	0.00954	STXBP4	+	FALSE	MIR	SINE,Alu
chr2	91847976	C	T	0.00010		.	FALSE	TAR1	SINE,Alu
chr12	25360463	A	T	0.00118	KRAS	-	FALSE
chr1	144852167	G	T	0.00352	NBPF20,PDE4DIP	+,-	FALSE
chr1	214529170	T	C	0.00670	PTPN14	-	TRUE
chr11	94863483	C	T	0.00501	ENDOD1	+	FALSE
chr3	10193732	A	G	0.00472	VHL	+	TRUE	AluJr	SINE,Alu
chr1	179070646	T	C	0.00283	ABL2	-	TRUE	AluSz	SINE,Alu
chr1	33086876	T	C	0.00075	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr8	11700373	T	C	0.00212	CTSB	-	TRUE	AluSq2	SINE,Alu
chr1	36068370	T	C	0.00789	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	142688707	A	C	0.00504		.	FALSE
chr1	38278949	C	A	0.00664	MTF1	-	FALSE	AluSp	SINE,Alu
chr19	53914395	A	G	0.00227	ZNF765	+	TRUE	AluSx	SINE,Alu

RBP	PA2G4
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR309PPC
Platform	HiSeq
Pubmed ID	32252787

PA2G4 - Target Gene Network