RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	112874290	A	T	0.00455	TMEM87B	+	FALSE
chr5	151041886	T	G	0.00176	SPARC	-	FALSE
chr1	44088117	G	T	0.00584	PTPRF	+	FALSE	(T)n	SINE,Alu
chr4	79832870	A	T	0.00655	BMP2K	+	FALSE
chr1	181057918	C	G	0.00961	IER5	+	FALSE
chr1	67874859	T	C	0.00027	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	25894469	A	T	0.00326	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr12	120898728	A	G	0.00566	GATC	+	TRUE	AluY	SINE,Alu
chr2	201774244	T	C	0.00332		.	FALSE	AluSz	SINE,Alu
chr1	990380	C	T	3.90118E-06	AGRN	+	FALSE
chr1	38174665	G	A	0.00339	CDCA8	+	FALSE
chr5	178224547	A	G	0.00064	AACSP1	-	FALSE
chr3	5259480	T	A	5.79324E-05	EDEM1	+	FALSE
chr1	45976147	G	A	0.00476	MMACHC	+	FALSE	AluJr	SINE,Alu
chr1	24999468	G	T	0.00075	SRRM1	+	FALSE	(T)n	SINE,Alu
chr2	179371305	A	G	0.00696	MIR548N	+	FALSE
chr6	99319240	T	A	0.00842		.	FALSE	Cheshire	SINE,Alu
chr10	49609751	A	G	0.00979	MAPK8	+	FALSE
chr1	43748051	A	G	0.00489	C1orf210	-	FALSE	L2c	SINE,Alu
chr17	73703945	C	T	0.00242	SAP30BP	+	FALSE	MIRc	SINE,Alu
chr9	115446725	T	C	0.00917	INIP	-	TRUE	AluJr	SINE,Alu
chr3	184766301	T	C	0.00648	VPS8	+	FALSE
chr1	1534676	C	T	4.01953E-10	FNDC10	-	FALSE
chr1	9160989	T	C	0.00609		.	FALSE	AluJb	SINE,Alu
chr1	205738843	C	T	0.00072	RAB29	-	FALSE	AluSz6	SINE,Alu
chr1	1534205	G	A	1.69659E-11	FNDC10	-	FALSE
chr5	149823795	A	T	0.00722	RPS14	-	FALSE
chr1	201846675	C	T	0.00145	IPO9	+	FALSE
chr9	136209397	G	C	0.00709	MED22	-	FALSE
chr1	23636275	G	T	0.00185	HNRNPR	-	FALSE
chr16	3207363	C	T	0.00104		.	FALSE
chr17	42876398	T	C	0.00697	GJC1	-	FALSE	AluSz6	SINE,Alu
chr4	178281754	G	A	0.00057	NEIL3	+	FALSE
chr12	9464358	A	G	0.00056	LOC642846	+	FALSE
chr1	150479901	C	T	0.00228	TARS2	+	FALSE	AluSc8	SINE,Alu
chr1	44035352	C	T	0.00055	PTPRF	+	FALSE
chr1	53289940	A	G	7.75582E-06	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	120611964	G	C	0.00211	NOTCH2	-	FALSE
chr1	1550392	C	T	0.00617		.	FALSE	AluSg	SINE,Alu
chr1	1594977	T	C	0.00344	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	10519888	T	C	0.00218		.	FALSE	AluJr	SINE,Alu
chr9	19376248	A	T	0.00821		.	FALSE
chr15	41590982	A	G	0.00327	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr8	27661063	T	A	0.00138	ESCO2	+	FALSE	(AC)n	SINE,Alu
chr7	144060286	A	G	0.00674	ARHGEF5	+	FALSE
chr1	145512059	A	G	0.00053	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr2	217366626	A	G	0.00057		.	FALSE	AluSz	SINE,Alu
chr8	71550832	T	C	0.00234	LACTB2-AS1,LACTB2	+,-	FALSE
chr1	113672640	A	G	0.00629		.	FALSE	AluJb	SINE,Alu
chr1	117530188	A	G	0.00199	PTGFRN	+	FALSE
chr1	10518591	A	T	0.00169		.	FALSE
chr1	16890421	G	A	0.00024	NBPF1	-	FALSE
chr8	48890247	A	G	2.58682E-14	MCM4	+	TRUE	AluJb	SINE,Alu
chr2	74333232	C	T	0.00274	TET3	+	FALSE
chr7	135285707	G	A	0.00084	NUP205	+	FALSE
chr2	37329300	T	C	0.00092		.	FALSE	AluJr4	SINE,Alu
chr7	72480095	A	G	0.00590	PMS2P2	+	FALSE
chr4	56295160	T	A	0.00187	CLOCK	-	FALSE	(T)n	SINE,Alu
chr3	49571462	G	T	0.00032	DAG1	+	FALSE
chr1	6283260	T	C	0.00125	ICMT	-	TRUE	AluSx3	SINE,Alu
chr7	129592510	G	T	0.00165	UBE2H	-	FALSE
chr1	32637063	C	T	0.00071	KPNA6	+	FALSE
chr1	2336210	C	T	0.00206	RER1	+	FALSE
chr6	42856176	A	G	0.00202	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	109818158	C	T	4.51493E-05	CELSR2	+	FALSE
chr2	74349080	A	G	0.00094		.	FALSE	AluSz	SINE,Alu
chr3	15114306	T	C	0.00036	RBSN	-	TRUE	AluY	SINE,Alu
chr1	38327700	T	C	0.00132	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	24296849	T	C	0.00125		.	FALSE
chr1	6582558	T	C	0.00479	NOL9	-	TRUE	AluSx1	SINE,Alu
chr5	43377390	T	C	0.00062	CCL28	-	TRUE	AluSz	SINE,Alu
chr1	40537922	A	G	0.00686	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	172115902	G	A	9.15134E-06	FNDC3B	+	FALSE
chr7	137612916	G	C	0.00356	CREB3L2	-	FALSE
chr2	217366674	A	G	0.00889		.	FALSE	AluSz	SINE,Alu
chr2	87821033	C	A	0.00474		.	FALSE
chr2	68402154	A	T	0.00991	PNO1	+	FALSE
chr8	30536606	T	C	0.00017	GSR	-	TRUE	AluSp	SINE,Alu
chr1	26755209	A	G	0.00745	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr20	57603729	A	T	0.00444		.	FALSE
chr1	36068295	T	C	2.11660E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr4	83406545	A	G	0.00156	TMEM150C	-	FALSE
chr2	55516903	G	A	3.31807E-05	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr3	58292300	C	T	0.00740	RPP14	+	FALSE
chr1	6283296	T	C	0.00122	ICMT	-	TRUE	AluSx3	SINE,Alu
chr4	7764148	G	A	2.22190E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	45976723	T	C	0.00239	MMACHC,PRDX1	+,-	FALSE
chr1	45975574	A	G	0.00050	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	168169452	G	A	0.00600	TIPRL	+	FALSE
chr12	133635613	T	C	0.00805		.	FALSE
chr1	179811337	C	A	0.00670	TOR1AIP2	-	FALSE	AluSp	SINE,Alu
chr1	24151858	C	T	0.00104	HMGCL	-	FALSE
chr1	27202959	T	C	0.00094		.	FALSE	AluSq2	SINE,Alu
chr4	169847647	A	T	0.00328	PALLD	+	FALSE
chr2	37330611	T	C	0.00835		.	FALSE	AluSq2	SINE,Alu
chr14	68144079	G	T	0.00974	RDH11	-	FALSE
chr2	239973454	T	C	0.00091	HDAC4	-	FALSE
chr2	70131954	G	C	0.00370	SNRNP27	+	FALSE
chr1	54692341	T	C	0.00027	SSBP3	-	FALSE	(T)n	SINE,Alu
chr3	10192608	A	G	0.00030	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	10521238	T	C	0.00597	DFFA	-	TRUE	AluY	SINE,Alu
chr1	6282587	T	C	0.00487	ICMT	-	TRUE
chr1	206669958	G	A	0.00347	IKBKE	+	FALSE
chr1	220323448	C	T	0.00985	RAB3GAP2	-	FALSE
chr3	10142949	C	T	0.00612	FANCD2,FANCD2OS	+,-	FALSE
chr1	36067817	T	C	0.00016	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	8930561	T	G	0.00913	ENO1	-	FALSE
chr5	118174668	T	C	1.32199E-05	DTWD2	-	TRUE	AluY	SINE,Alu
chr1	19543352	T	C	0.00098	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	44088112	G	T	0.00822	PTPRF	+	FALSE	(T)n	SINE,Alu
chr6	42856019	A	G	0.00184	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr9	115447534	T	C	0.00203	INIP	-	TRUE	AluJb	SINE,Alu
chr2	68402797	T	A	0.00656	PNO1	+	FALSE
chr6	160211656	G	T	0.00339	MRPL18	+	FALSE
chr3	100083427	T	A	0.00456	TOMM70	-	FALSE	FAM	SINE,Alu
chr1	32833541	T	C	0.00903	BSDC1	-	TRUE
chr1	117530477	G	A	0.00223	PTGFRN	+	FALSE
chr1	20977221	A	T	0.00116	PINK1,PINK1-AS	+,-	FALSE
chr6	38140505	A	G	0.00109	BTBD9	-	FALSE
chr1	45975670	A	G	0.00530	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr6	159396143	T	C	0.00185		.	FALSE	AluSc	SINE,Alu
chr3	45722047	A	G	0.00319	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	42008521	G	T	0.00882	HIVEP3	-	FALSE
chr2	69690885	T	C	0.00970	AAK1	-	TRUE	AluSx3	SINE,Alu
chr19	19793709	A	G	0.00700	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr4	2940364	T	C	0.00329	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	156206121	G	A	0.00423	PMF1-BGLAP,PMF1	+	FALSE
chr2	203741602	T	C	0.00581		.	FALSE	AluJr	SINE,Alu
chr1	59147926	T	C	0.00601	MYSM1	-	FALSE
chr1	40537941	A	C	0.00627	CAP1	+	FALSE	(A)n	SINE,Alu
chr12	125512540	A	G	7.43833E-09		.	FALSE
chr15	66641732	G	C	0.00106	TIPIN	-	FALSE
chr5	34908535	T	C	0.00054	RAD1	-	FALSE	AluSp	SINE,Alu
chr16	74656352	T	C	0.00187	RFWD3	-	TRUE	AluJb	SINE,Alu
chr1	209605640	A	C	0.00581	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr3	10255002	C	G	0.00043	IRAK2	+	FALSE
chr2	131131424	G	C	0.00845	PTPN18	+	FALSE
chr6	33385535	A	G	0.00671		.	FALSE
chr1	38463218	G	A	1.86271E-07	FHL3	-	FALSE
chr1	22148474	T	C	0.00089	LDLRAD2	+	FALSE	MIRb	SINE,Alu
chr1	36067760	T	C	0.00362	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	45721934	A	G	0.00639	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	160967854	T	C	0.00150	F11R	-	TRUE	AluSp	SINE,Alu
chr16	11931210	G	T	0.00292	RSL1D1	-	FALSE
chr6	132780768	G	A	0.00668	STX7	-	FALSE
chr19	13884084	A	G	0.00843	MRI1	+	TRUE	AluSz	SINE,Alu
chr2	67630980	G	A	0.00225	ETAA1	+	FALSE
chr1	120286837	A	G	0.00153	PHGDH	+	FALSE
chr2	208619315	A	G	0.00091	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr1	65299558	C	T	0.00161	JAK1	-	FALSE
chr2	3592615	T	C	0.00331	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr5	96503523	C	T	0.00072	RIOK2	-	FALSE
chr14	76680377	T	A	0.00143		.	FALSE	L1M5	SINE,Alu
chr22	18571345	A	G	0.00113	PEX26	+	TRUE	AluSz	SINE,Alu
chr15	90815820	A	G	0.00171		.	FALSE	FRAM	SINE,Alu
chr1	25570562	T	A	0.00028	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	65297861	T	C	0.00895	RAVER2	+	FALSE
chr3	124774432	T	G	0.00754	HEG1	-	FALSE
chr1	52306087	C	T	0.00022	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr3	124948049	T	C	0.00069	ZNF148	-	TRUE
chr1	70718269	A	G	0.00234		.	FALSE
chr7	99006740	G	A	0.00269	BUD31	+	FALSE
chr1	134370	T	C	0.00327		.	FALSE	AluSg	SINE,Alu
chr14	24760808	C	T	0.00203	DHRS1	-	FALSE
chr4	39551167	T	C	0.00031	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr12	9098987	T	A	0.00180	M6PR	-	FALSE
chr2	128601490	T	C	0.00013		.	FALSE	AluJr	SINE,Alu
chr3	185009713	G	T	0.00106	MAP3K13	+	FALSE
chr3	45722396	A	G	0.00231	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr3	9517369	C	T	0.00395	SETD5	+	FALSE
chr10	75008841	T	C	0.00088	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	33149414	A	G	5.81443E-05	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr11	6478619	G	A	0.00656	TRIM3	-	FALSE
chr1	21545089	C	T	0.00010	ECE1	-	FALSE	AluSx1	SINE,Alu
chr1	113672569	A	G	0.00674		.	FALSE	AluJb	SINE,Alu
chr1	31732601	A	T	0.00479	SNRNP40	-	FALSE
chr5	72876776	C	A	0.00875	UTP15	+	FALSE
chr1	27205871	G	T	0.00931		.	FALSE
chr5	135392426	T	C	8.62804E-07	TGFBI	+	FALSE
chr1	39990456	G	A	0.00749	BMP8A,PPIEL	+,-	FALSE	L2b	SINE,Alu
chr2	101622888	T	A	0.00210	RPL31	+	FALSE
chr3	24019976	C	A	0.00485	NR1D2	+	FALSE
chr1	10517613	T	C	0.00375		.	FALSE	AluSx1	SINE,Alu
chr4	3242223	G	A	0.00073	HTT	+	FALSE
chr1	179042300	C	A	0.00491	FAM20B	+	FALSE
chr2	74334790	A	G	0.00870	TET3	+	FALSE
chr1	145513125	A	G	0.00274	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	35251229	G	A	0.00516	GJB3	+	FALSE
chr19	53914448	A	G	0.00583	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	158066834	A	G	0.00609	KIRREL	+	FALSE
chr1	3545199	G	C	0.00188	TPRG1L	+	FALSE
chr1	45975345	A	G	0.00120	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	19542463	T	C	0.00182	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr5	125961623	A	G	6.78430E-09	PHAX	+	TRUE	AluSz6	SINE,Alu
chr5	36143413	G	A	0.00097	LMBRD2	-	FALSE
chr1	145369589	T	C	0.00696	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr2	219460472	T	C	0.00187	CNOT9	+	FALSE
chr11	68523472	T	C	0.00649	CPT1A	-	TRUE	AluSq	SINE,Alu
chr2	47398328	G	A	0.00434	CALM2	-	FALSE
chr19	7084578	A	G	0.00346	ZNF557	+	TRUE	AluJb	SINE,Alu
chr1	33148623	A	G	4.79591E-07	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr3	194362721	G	A	5.25740E-07	LSG1	-	FALSE
chr1	143189473	C	A	0.00572	LOC102723769	-	FALSE
chr3	14526649	T	G	0.00260	SLC6A6	+	FALSE
chr14	36784095	C	T	0.00866	MBIP	-	FALSE
chr17	49042216	T	C	0.00746	SPAG9	-	TRUE	AluJb	SINE,Alu
chr2	102508655	G	T	0.00817	MAP4K4	+	FALSE
chr1	70904800	G	T	0.00020	CTH	+	FALSE
chr2	55516891	G	A	2.12747E-05	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr1	10520902	A	T	0.00032	DFFA	-	FALSE
chr3	49395691	C	T	0.00037	GPX1	-	FALSE	(GCC)n	SINE,Alu
chr1	225707043	T	C	2.18813E-07	ENAH	-	FALSE
chr3	15296358	A	T	4.17447E-06	SH3BP5,SH3BP5-AS1	+,-	FALSE
chr3	138121198	C	T	0.00076	MRAS	+	FALSE
chr3	15113681	T	C	0.00048	RBSN	-	TRUE	AluSz6	SINE,Alu
chr14	100762714	T	C	0.00573	SLC25A29	-	TRUE	AluJo	SINE,Alu
chr4	83406548	A	T	0.00020	TMEM150C	-	FALSE
chr1	6283296	T	C	0.00106	ICMT	-	TRUE	AluSx3	SINE,Alu
chr5	125961079	A	G	0.00258	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	33071096	A	G	0.00692	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr2	231032372	A	G	0.00691		.	FALSE	MLT1H	SINE,Alu
chr1	16933110	T	C	0.00821	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	33148210	A	G	0.00778	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	39951484	C	A	0.00592	MACF1	+	FALSE
chr5	130540369	C	A	0.00196	LYRM7	+	FALSE	Tigger4a	SINE,Alu
chr6	44222158	T	A	0.00856	SLC35B2	-	FALSE
chr1	100657416	C	T	0.00228	DBT	-	FALSE	AluJb	SINE,Alu
chr3	182661952	C	T	0.00438	DCUN1D1	-	FALSE	A-rich	SINE,Alu
chr1	11141187	C	G	0.00819	EXOSC10	-	FALSE
chr12	98943033	A	G	0.00346	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	19810693	G	C	0.00042	CAPZB	-	FALSE
chr1	33145978	A	T	0.00288	SYNC,RBBP4	+,-	FALSE
chr5	40826638	C	A	0.00749	LOC100506548	-	FALSE	LTR78	SINE,Alu
chr6	7610036	C	A	0.00545	SNRNP48	+	FALSE	L1ME1	SINE,Alu
chr1	171558516	C	T	4.87297E-05	PRRC2C	+	FALSE
chr3	10356760	G	A	0.00951	SEC13	-	FALSE	MIRb	SINE,Alu
chr1	10517512	T	C	0.00646		.	FALSE	AluSx1	SINE,Alu
chr1	202697335	G	A	0.00374	KDM5B	-	FALSE
chr1	39549983	G	A	0.00896	MACF1	+	FALSE
chr16	74655596	T	G	0.00028	RFWD3	-	FALSE	AluSx	SINE,Alu
chr2	99813003	A	G	2.46688E-05	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	22159774	G	A	0.00257	HSPG2	-	FALSE
chr17	57281098	A	G	0.00181	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	89648329	T	C	0.00093	GBP4	-	TRUE	AluYg6	SINE,Alu
chr1	24022437	A	G	0.00342	RPL11	+	FALSE
chr1	10520099	T	C	6.30717E-05		.	FALSE	AluSx	SINE,Alu
chr1	53291425	A	G	2.55913E-05	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	9160982	T	C	0.00350		.	FALSE	AluJb	SINE,Alu
chr2	27838058	C	A	0.00063	ZNF512	+	FALSE
chr1	1344998	A	G	5.29904E-05		.	FALSE	AluSg	SINE,Alu
chr6	24719404	C	A	0.00024		.	FALSE
chrX	135300016	T	C	0.00358	MAP7D3	-	TRUE	AluSz	SINE,Alu
chr19	11256689	T	C	9.47404E-06	SPC24	-	TRUE	AluJr4	SINE,Alu
chr7	2278515	T	C	0.00937	MRM2	-	TRUE	AluSx1	SINE,Alu
chr19	19793168	A	G	0.00481	ZNF101	+	TRUE	AluSz	SINE,Alu
chr22	17129526	A	G	0.00485	TPTEP1	+	TRUE	AluSz	SINE,Alu
chr14	75202412	A	G	5.03546E-10	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	10517290	T	C	0.00437		.	FALSE	AluJr	SINE,Alu
chr11	768386	T	C	0.00208	PDDC1	-	TRUE	AluSc	SINE,Alu
chr8	144684474	T	C	0.00058		.	FALSE
chr1	95362949	A	T	0.00114	CNN3	-	FALSE	(A)n	SINE,Alu
chr2	64687777	G	T	7.38315E-07	LGALSL	+	FALSE
chr6	3021465	T	C	0.00029	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr2	37431563	A	G	0.00993	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr8	95804615	A	G	0.00968	DPY19L4	+	TRUE	AluSq2	SINE,Alu
chr1	27190857	C	T	0.00160	SFN	+	FALSE
chr4	56291751	A	C	0.00291	TMEM165	+	FALSE
chr1	3545194	C	G	0.00176	TPRG1L	+	FALSE
chr3	120114914	G	A	1.07649E-06	FSTL1	-	FALSE
chr2	70506338	C	T	0.00026	PCYOX1	+	FALSE
chr1	10520439	T	C	0.00293		.	FALSE	AluSx1	SINE,Alu
chr1	120612006	G	A	0.00602	NOTCH2	-	FALSE
chr5	137754695	T	C	0.00266	KDM3B	+	FALSE
chr1	16973198	G	A	0.00514	MST1P2	+	FALSE
chr15	41593269	A	G	0.00196		.	FALSE	AluSz6	SINE,Alu
chr3	12625747	G	A	0.00067	RAF1	-	FALSE
chr1	16890644	C	T	0.00174	NBPF1	-	FALSE
chr1	31192650	T	G	0.00727	MATN1,MATN1-AS1	+,-	FALSE
chr1	206566948	G	A	0.00879	SRGAP2	+	FALSE
chr2	217366901	A	G	0.00143		.	FALSE	AluSz6	SINE,Alu
chr1	145273345	T	C	0.00640	NBPF20,NOTCH2NL	+	FALSE
chr1	225707044	C	T	1.61826E-07	ENAH	-	FALSE
chr11	119533726	A	G	0.00169	NECTIN1	-	FALSE
chr13	28240417	C	G	6.17934E-05	POLR1D	+	FALSE
chr16	75479474	T	C	2.06057E-06	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr1	16893813	A	G	7.34801E-05	NBPF1	-	FALSE
chr3	57913810	G	A	0.00477	SLMAP	+	FALSE
chr5	125961468	A	G	2.27854E-07	PHAX	+	TRUE	AluSz6	SINE,Alu
chr2	55462747	T	A	0.00163	RPS27A	+	FALSE
chr1	206566904	T	C	0.00084	SRGAP2	+	FALSE
chr1	10520764	T	C	0.00542	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	16953672	C	T	0.00243	CROCCP2	-	FALSE
chr6	114182271	G	A	0.00011	MARCKS	+	FALSE
chr8	30536544	T	C	0.00122	GSR	-	TRUE	AluSp	SINE,Alu
chr5	133956668	G	A	0.00419	SAR1B	-	FALSE
chr1	12073251	G	T	0.00957	MFN2	+	FALSE
chr1	144917546	A	G	0.00614	NBPF20,PDE4DIP	+,-	FALSE
chr1	28662157	A	G	0.00159	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	153585584	G	A	0.00011	S100A16	-	FALSE
chr1	16946336	G	A	0.00409	CROCCP2	-	FALSE
chr2	47703548	G	A	5.05442E-05	MSH2	+	FALSE
chr1	146495577	T	A	0.00072	LOC728989	-	FALSE
chr9	139100154	C	G	0.00464	QSOX2	-	FALSE
chr1	788840	T	C	0.00415	LINC01128	+	FALSE
chr1	55316322	A	G	0.00266	DHCR24	-	FALSE
chr3	10005650	C	T	0.00698	EMC3	-	FALSE
chr1	117648269	G	A	0.00988		.	FALSE	AluSz6	SINE,Alu
chr1	145689798	A	G	0.00200	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr1	184663537	A	C	0.00256	EDEM3	-	FALSE
chr6	34254585	G	T	0.00519		.	FALSE	AluSq2	SINE,Alu
chr2	9629305	A	T	0.00079	ADAM17	-	FALSE
chr1	20976075	T	C	0.00351	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr3	45722055	A	G	0.00835	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	160966434	T	C	4.88498E-15	F11R	-	TRUE	AluSg	SINE,Alu
chr12	10311392	T	C	0.00177	OLR1	-	FALSE
chr6	3266908	G	A	0.00974	PSMG4	+	FALSE
chr8	95804469	A	G	0.00133	DPY19L4	+	TRUE	AluSq2	SINE,Alu
chr1	158066172	C	T	0.00616	KIRREL	+	FALSE
chr1	6283264	T	C	0.00287	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	195395402	C	A	0.00066	SDHAP2	+	FALSE
chr1	28836900	A	G	0.00018	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr3	125248854	A	C	0.00014	OSBPL11	-	FALSE
chr1	67874697	T	C	0.00022	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	46076467	A	G	0.00118	NASP	+	TRUE	AluSx	SINE,Alu
chr2	171608711	T	A	0.00492	LOC101926913	-	FALSE
chr1	16932429	C	G	0.00076	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	10520487	T	C	0.00257		.	FALSE	AluSx1	SINE,Alu
chr1	91990445	A	G	5.21972E-05	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr1	110023610	G	A	0.00636	SYPL2	+	FALSE
chr2	34080819	A	C	0.00815	LINC01317	+	FALSE	MSTD	SINE,Alu
chr1	28661656	A	G	0.00319	MED18	+	TRUE	AluSg	SINE,Alu
chr8	11701429	T	C	0.00758	CTSB	-	TRUE	AluSx1	SINE,Alu
chr1	10517276	T	C	0.00079		.	FALSE	AluJr	SINE,Alu
chr11	65544342	T	C	3.74920E-05	AP5B1	-	TRUE	AluJb	SINE,Alu
chr1	92195511	C	T	0.00681	TGFBR3	-	FALSE
chr1	16891340	T	A	0.00440	NBPF1	-	FALSE
chr1	54635874	T	C	0.00334		.	FALSE	AluSx	SINE,Alu
chr3	48787674	T	C	0.00240	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	46075191	C	A	0.00457	NASP	+	FALSE	A-rich	SINE,Alu
chr1	16910172	G	A	0.00958	NBPF1	-	FALSE
chr1	92976590	G	A	0.00768	EVI5	-	FALSE
chr1	52838798	T	C	0.00069	ORC1	-	TRUE	AluJb	SINE,Alu
chrX	118920477	A	T	0.00529	RPL39	-	FALSE
chr1	201438097	G	C	2.75480E-05	PHLDA3	-	FALSE
chr1	40306898	T	C	0.00384	TRIT1	-	FALSE
chr10	15120279	T	C	0.00255	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr1	226923938	A	C	0.00160	ITPKB	-	FALSE
chr1	33149443	A	G	0.00897	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	1252723	T	C	7.44553E-05	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	160966353	T	C	0.00385	F11R	-	TRUE	AluSg	SINE,Alu
chr1	10042987	A	G	0.00261	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	16890644	C	T	0.00533	NBPF1	-	FALSE
chr6	42856978	A	G	0.00061	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	9162223	T	C	0.00997		.	FALSE	AluSx	SINE,Alu
chr3	172117459	C	A	0.00791	FNDC3B	+	FALSE
chr12	56510697	G	A	0.00989	RPL41	+	FALSE
chr1	85113229	A	G	0.00080	SSX2IP	-	FALSE
chr1	180167090	C	T	0.00607	QSOX1	+	FALSE
chr16	67715890	T	C	9.92672E-05	GFOD2	-	TRUE	AluJr	SINE,Alu
chr1	33149495	A	G	0.00675	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr17	80280865	G	A	0.00984	SECTM1	-	FALSE
chr6	26095462	A	G	0.00113	HFE	+	TRUE	AluY	SINE,Alu
chr2	74690039	G	A	0.00412	MOGS	-	FALSE
chr8	33356827	T	A	0.00122	MAK16,TTI2	+,-	FALSE
chr4	177251290	G	A	0.00580	SPCS3	+	FALSE
chr1	31732677	G	A	0.00030	SNRNP40	-	FALSE	A-rich	SINE,Alu
chr2	191556847	G	T	9.96724E-06	NAB1	+	FALSE
chr3	148748257	C	G	0.00989	HLTF	-	FALSE
chr1	32384710	G	A	0.00299	PTP4A2	-	FALSE
chr1	33148196	A	G	0.00303	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr8	8099397	T	C	0.00975	FAM86B3P	+	FALSE
chr1	19543349	T	C	0.00090	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	20976163	C	T	0.00174	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr2	196999052	C	G	0.00358	STK17B	-	FALSE	MER1B	SINE,Alu
chr9	136335345	G	A	0.00490	CACFD1	+	FALSE	(TG)n	SINE,Alu
chr1	120162587	G	A	0.00730	ZNF697	-	FALSE
chr1	204521590	A	G	1.33621E-05	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	201350983	C	T	0.00768	LAD1	-	FALSE
chr3	181430454	G	A	0.00577	SOX2-OT,SOX2	+	FALSE
chr1	108742632	C	T	0.00933	SLC25A24	-	FALSE
chr1	36770599	G	T	0.00123	THRAP3	+	FALSE	(T)n	SINE,Alu
chr12	56510698	C	G	0.00944	RPL41	+	FALSE
chr1	145281543	C	T	0.00999	NBPF20,NOTCH2NL	+	FALSE
chr1	25570563	A	T	0.00276	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	92862457	A	G	0.00974		.	FALSE	AluSp	SINE,Alu
chr1	27731933	C	A	1.77427E-09	WASF2	-	FALSE
chr14	53242425	T	C	0.00473	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr1	145512014	A	G	0.00370	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	76229120	T	C	0.00309	ACADM	+	FALSE
chr2	61705068	A	T	0.00103		.	FALSE
chr1	113243048	C	T	0.00941	MOV10	+	FALSE
chr1	27533879	G	A	0.00877		.	FALSE
chr1	70718276	G	T	0.00493		.	FALSE
chr1	3545192	C	G	0.00600	TPRG1L	+	FALSE
chr1	26608009	T	A	0.00496	SH3BGRL3	+	FALSE
chr1	32953296	A	G	5.26589E-05	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr16	70695982	T	C	0.00926	MTSS1L	-	FALSE
chr2	110373938	T	G	0.00413	SOWAHC	+	FALSE	(GAAT)n	SINE,Alu
chr1	214524496	T	C	0.00114	PTPN14	-	TRUE	AluSg	SINE,Alu
chr3	183889337	A	T	3.46641E-05	DVL3	+	FALSE
chr19	19792345	A	G	0.00272	ZNF101	+	TRUE	AluJb	SINE,Alu
chr3	41281413	T	A	0.00047	CTNNB1	+	FALSE	(T)n	SINE,Alu
chr10	22824831	C	T	0.00702	PIP4K2A	-	FALSE
chr2	176791182	T	C	0.00603	LNPK	-	TRUE	MSTD	SINE,Alu
chr1	67874859	T	C	0.00209	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	6582353	T	C	0.00121	NOL9	-	TRUE	AluSx1	SINE,Alu
chr4	190878580	A	G	0.00097	FRG1	+	FALSE
chr5	31553951	C	T	0.00240	C5orf22	+	FALSE
chr1	16576836	A	G	0.00885	FBXO42	-	FALSE
chr2	171634349	T	A	0.00104	ERICH2	+	FALSE
chr4	6302519	G	A	0.00195	WFS1	+	FALSE
chr2	242384368	G	A	0.00096	FARP2	+	FALSE	AluJr	SINE,Alu
chr1	22357435	A	C	0.00454	LINC00339	+	FALSE
chr9	136209400	A	G	0.00328	MED22	-	FALSE
chr1	156692049	A	T	6.25184E-05	ISG20L2	-	FALSE
chr1	45975358	A	G	0.00020	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr17	65334802	T	C	1.10547E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr2	65432447	C	T	0.00486		.	FALSE
chr11	6411935	T	C	0.00905	SMPD1	+	FALSE	(CTGGCG)n	SINE,Alu
chr12	100562935	G	T	0.00074	GOLGA2P5	-	FALSE	AluSg	SINE,Alu
chr7	6501828	C	A	0.00110	KDELR2	-	FALSE
chr1	10517306	T	C	0.00102		.	FALSE	AluJr	SINE,Alu
chr2	77745788	T	C	0.00000	LRRTM4	-	FALSE
chr2	37333924	T	C	0.00298	EIF2AK2	-	FALSE	AluSz	SINE,Alu
chr1	36068278	T	C	0.00068	PSMB2	-	TRUE	AluSc	SINE,Alu
chr14	19684445	A	G	0.00351	DUXAP10	+	FALSE
chr6	31601344	T	C	0.00569		.	FALSE
chr1	145509569	A	G	0.00777	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr7	55433884	A	C	0.00723	LANCL2	+	FALSE
chr1	26143726	G	T	0.00556	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	20976078	T	C	0.00344	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	205583612	C	A	0.00311	ELK4	-	FALSE
chr2	220406239	T	G	0.00014	CHPF	-	FALSE	MIRb	SINE,Alu
chr1	1717502	T	G	0.00239	GNB1	-	FALSE
chr1	3545204	C	G	0.00829	TPRG1L	+	FALSE
chr1	16907328	G	T	0.00099	NBPF1	-	FALSE
chr1	10502831	A	G	0.00193	APITD1,APITD1-CORT	+	FALSE
chr1	19585917	T	A	0.00308	MRTO4	+	FALSE	AluJr	SINE,Alu
chr5	37290413	T	C	0.00467		.	FALSE	AluSz	SINE,Alu
chr5	149829073	A	G	0.00866	RPS14	-	FALSE
chrX	123046741	A	G	0.00169	XIAP	+	TRUE	AluSz	SINE,Alu
chr1	10518591	A	T	0.00030		.	FALSE
chr1	27202960	T	C	0.00213		.	FALSE	AluSq2	SINE,Alu
chr1	16894514	C	T	0.00348	NBPF1	-	FALSE
chr5	40832553	A	T	9.00390E-07	RPL37	-	FALSE
chr1	32096265	A	G	0.00208	PEF1	-	FALSE
chr12	80014907	A	T	0.00737	PAWR	-	FALSE
chr10	51943605	C	T	0.00508		.	FALSE	MLT1J	SINE,Alu
chr1	120164994	C	T	0.00829	ZNF697	-	FALSE
chr6	150045926	T	C	0.00053	NUP43	-	TRUE	AluSq	SINE,Alu
chr1	16932968	G	A	0.00074	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr3	196079280	T	C	0.00614		.	FALSE	AluSx	SINE,Alu
chr1	145688973	A	G	7.17653E-05	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr3	149683508	A	G	0.00397	PFN2	-	FALSE
chr1	97144546	A	C	0.00803		.	FALSE
chr4	165998149	T	C	0.00057	TMEM192	-	TRUE	AluSx	SINE,Alu

RBP	RTF1
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR783YSQ
Platform	HiSeq
Pubmed ID	32252787

RTF1 - Target Gene Network