RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	52027636	C	T	0.00965		.	FALSE
chr1	6473294	A	G	0.00013		.	FALSE	Arthur1C	SINE,Alu
chr5	126171974	C	T	0.00867	LMNB1	+	FALSE
chr2	128951941	A	G	0.00624	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	26226610	C	T	0.00955	STMN1	-	FALSE
chr1	10044366	A	G	0.00531	NMNAT1	+	TRUE	AluSx1	SINE,Alu
chr1	33148282	A	G	0.00825	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr2	201842434	T	C	1.94652E-05	FAM126B	-	TRUE	AluJb	SINE,Alu
chr1	10520649	T	C	0.00629	DFFA	-	TRUE	AluSc8	SINE,Alu
chr3	111732608	G	A	2.81327E-08	TAGLN3	+	FALSE
chr1	1647814	T	C	8.49337E-05	CDK11B,CDK11A	-	FALSE
chr1	180247476	T	C	0.00890		.	FALSE
chr1	6282324	T	C	0.00013	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	54692341	T	C	0.00027	SSBP3	-	FALSE	(T)n	SINE,Alu
chr6	114182986	T	A	0.00316	MARCKS	+	FALSE
chr5	130536847	A	G	0.00917	LYRM7	+	TRUE	AluSx4	SINE,Alu
chr1	156262653	A	C	0.00128	GLMP	-	FALSE
chr16	89623623	T	C	0.00740	SPG7	+	FALSE
chr1	33148623	A	G	0.00221	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr6	158517308	A	G	0.00959	SYNJ2	+	FALSE
chr1	206635245	T	C	0.00238	SRGAP2	+	FALSE
chr1	117617705	A	G	0.00081	TTF2	+	FALSE
chr9	130268407	C	G	0.00902	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr5	149829071	T	C	0.00407	RPS14	-	FALSE
chr9	137330711	T	A	0.00194	RXRA	+	FALSE	(GCTG)n	SINE,Alu
chr1	10517635	T	C	7.30839E-07		.	FALSE	AluSx1	SINE,Alu
chr12	98943096	A	G	2.86698E-09	TMPO	+	TRUE	AluSz	SINE,Alu
chr9	86554217	C	T	0.00272	C9orf64	-	FALSE	AluSq2	SINE,Alu
chr5	41917720	T	G	0.00727	C5orf51	+	FALSE
chr2	208619742	A	G	1.70106E-07	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr1	156564754	A	G	0.00562	GPATCH4	-	FALSE
chr2	209113192	G	A	0.00610	IDH1	-	FALSE
chr7	65618870	A	G	0.00097	CRCP	+	TRUE	AluSx3	SINE,Alu
chr7	66105198	C	A	0.00456	KCTD7	+	FALSE
chr1	27205871	G	T	0.00931		.	FALSE
chr1	16945027	T	C	0.00819	CROCCP2	-	FALSE	L1ME3Cz	SINE,Alu
chr17	42880190	T	C	0.00284	GJC1	-	TRUE	AluJb	SINE,Alu
chr1	145513094	A	G	0.00633	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr19	18476206	A	G	0.00156	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr1	16889624	T	C	0.00795	NBPF1	-	TRUE
chr17	28506279	G	A	0.00634	NSRP1	+	FALSE
chr17	5288079	A	C	0.00085	RABEP1	+	FALSE
chr1	201860626	A	G	0.00599	SHISA4	+	FALSE
chr5	178224547	A	G	0.00064	AACSP1	-	FALSE
chr3	57882601	C	T	0.00987	SLMAP	+	FALSE
chr7	6202695	A	C	0.00013	CYTH3	-	FALSE
chr1	169293721	G	A	0.00978	NME7	-	FALSE
chr5	10655842	C	T	0.00024	ANKRD33B	+	FALSE
chr6	42061234	T	C	0.00170		.	FALSE	AluSx1	SINE,Alu
chr1	145369480	A	G	7.08400E-07	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	110136328	T	A	0.00577	GNAI3	+	FALSE
chr1	12628188	T	C	3.43513E-08	DHRS3	-	FALSE
chr1	110564996	C	T	0.00926	AHCYL1	+	FALSE
chr1	1447756	G	C	0.00354	ATAD3A	+	FALSE
chr4	17804852	T	C	0.00600	DCAF16	-	TRUE	AluSx	SINE,Alu
chr5	130537761	A	G	0.00126	LYRM7	+	FALSE	AluJb	SINE,Alu
chr1	148577409	C	A	0.00897	NBPF15	+	FALSE
chr7	86816663	A	G	0.00103	DMTF1	+	TRUE	AluJr	SINE,Alu
chr7	38764358	T	C	0.00675	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	16894497	C	T	0.00454	NBPF1	-	FALSE
chr17	263367	A	T	2.02495E-05	LOC105371430,C17orf97	+,-	FALSE
chr2	206983267	T	C	0.00133		.	FALSE	AluJb	SINE,Alu
chr1	16576290	G	A	0.00104	FBXO42	-	FALSE	A-rich	SINE,Alu
chr1	94351064	A	T	0.00620	GCLM	-	FALSE
chr1	10517567	T	C	9.16527E-06		.	FALSE	AluSx1	SINE,Alu
chr7	129472355	G	C	0.00246	UBE2H	-	FALSE
chr1	53708528	T	C	0.00057	LRP8	-	FALSE	(TA)n	SINE,Alu
chr6	42856157	A	G	0.00081	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	205056301	A	G	0.00506	RBBP5	-	FALSE
chr3	125033835	T	G	0.00385	ZNF148	-	FALSE	AluJb	SINE,Alu
chr4	38945834	T	C	0.00287	FAM114A1	+	FALSE	AluSc	SINE,Alu
chr3	120113286	C	T	1.47726E-06	FSTL1	-	FALSE
chr2	11781593	G	T	0.00551	GREB1	+	FALSE
chr2	198572076	A	C	0.00532	MARS2	+	FALSE
chr1	36067925	T	C	4.53272E-07	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	34906750	T	C	0.00527	RAD1	-	TRUE	AluJo	SINE,Alu
chr3	15112501	T	C	2.98131E-05	RBSN	-	TRUE	AluSq2	SINE,Alu
chr1	33149414	A	G	0.00990	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	36534024	A	G	0.00635		.	FALSE	FLAM_A	SINE,Alu
chr2	37330476	T	C	0.00269		.	FALSE	AluSq2	SINE,Alu
chr21	46935076	T	G	0.00164	SLC19A1	-	FALSE
chr10	51612914	T	C	0.00063	TIMM23B,TIMM23	+,-	FALSE
chr9	115447528	T	C	0.00112	INIP	-	TRUE	AluJb	SINE,Alu
chr15	41597559	A	G	0.00127		.	FALSE	AluSz6	SINE,Alu
chr3	41281407	G	T	0.00011	CTNNB1	+	FALSE
chr1	16958047	C	T	2.98219E-05		.	FALSE
chr1	1417974	C	T	0.00677	ATAD3B	+	FALSE
chr2	188330285	G	T	0.00590	TFPI	-	FALSE
chr1	32631809	C	T	2.91083E-08	KPNA6	+	FALSE
chr2	102484488	A	G	0.00192	MAP4K4	+	FALSE
chr1	19542458	T	C	0.00113	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr19	54627915	C	T	0.00015	PRPF31	+	FALSE
chr1	27662235	G	T	0.00766	TMEM222	+	FALSE
chr5	98128999	G	A	0.00663	RGMB	+	FALSE
chr10	89623858	G	C	0.00086	PTEN	+	FALSE	(CGG)n	SINE,Alu
chr1	120612154	C	G	0.00054	NOTCH2	-	FALSE
chr19	11257634	T	C	0.00237	SPC24	-	TRUE	AluSp	SINE,Alu
chr2	128063697	G	A	0.00775	MAP3K2	-	FALSE
chr2	113287200	C	T	0.00087	TTL	+	FALSE	(T)n	SINE,Alu
chr20	25428617	A	G	0.00622	GINS1	+	FALSE	AluJb	SINE,Alu
chr1	24289896	T	G	0.00051	PNRC2	+	FALSE
chr1	1595078	T	C	0.00714	CDK11B,SLC35E2B	-	FALSE	AluSg	SINE,Alu
chr1	45975574	A	G	0.00299	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr5	36687341	T	C	0.00930	SLC1A3	+	FALSE
chr1	10517653	T	C	0.00776		.	FALSE	AluSx1	SINE,Alu
chr1	10521237	T	C	0.00348	DFFA	-	TRUE	AluY	SINE,Alu
chr1	25894467	A	T	0.00136	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	10240859	G	T	0.00312	UBE4B	+	FALSE
chr3	100043289	C	T	0.00049	TBC1D23	+	FALSE
chr1	36390527	A	G	0.00065		.	FALSE	L2c	SINE,Alu
chr3	180694878	A	T	0.00431	FXR1	+	FALSE	(T)n	SINE,Alu
chr3	69026314	G	A	0.00881	EOGT	-	FALSE	AluSz6	SINE,Alu
chr16	28620957	T	C	0.00753	SULT1A1	-	TRUE	AluJr	SINE,Alu
chr1	118167515	C	T	3.85037E-05	FAM46C	+	FALSE
chr6	42857028	A	G	0.00064	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	145293469	G	C	0.00888	NBPF20,NBPF10	+	FALSE
chr1	144930940	T	C	6.15272E-05	NBPF20,PDE4DIP	+,-	FALSE
chr1	156565045	C	A	0.00995	GPATCH4	-	FALSE
chr7	55266417	T	C	0.00201	EGFR	+	FALSE
chr3	112319504	T	C	0.00040	LINC01279	-	TRUE	AluJb	SINE,Alu
chr2	37429677	A	G	0.00279	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	6683581	A	C	0.00126	PHF13	+	FALSE
chr1	9160900	T	C	0.00256		.	FALSE	AluJb	SINE,Alu
chr2	37327662	T	C	0.00058		.	FALSE
chr1	16945780	C	T	0.00034	CROCCP2	-	FALSE
chr5	177658896	A	C	0.00642	PHYKPL	-	FALSE
chr1	111682307	G	C	0.00637	DRAM2,CEPT1	+,-	FALSE
chr1	82453022	A	G	0.00532	ADGRL2	+	FALSE
chr11	32125961	C	T	0.00118	RCN1	+	FALSE
chr1	109818160	T	G	3.82986E-06	CELSR2	+	FALSE
chr17	49042216	T	C	0.00746	SPAG9	-	TRUE	AluJb	SINE,Alu
chr2	239972080	T	A	0.00136	HDAC4	-	FALSE
chr4	55147769	C	T	0.00079	PDGFRA	+	FALSE
chr7	116339672	C	T	0.00876	MET	+	FALSE
chr1	11298093	C	T	1.54321E-14	MTOR	-	FALSE
chr19	58356478	A	G	0.00030	ZNF587B	+	TRUE	AluSx	SINE,Alu
chr1	168213413	T	C	0.00733		.	FALSE	AluSx1	SINE,Alu
chr4	25279508	G	A	3.42130E-11	PI4K2B	+	FALSE
chr10	104661031	A	G	0.00265	BORCS7-ASMT,AS3MT	+	TRUE	AluY	SINE,Alu
chr2	37331546	T	C	0.00694		.	FALSE	AluJb	SINE,Alu
chr1	16723840	G	A	0.00072	SZRD1	+	FALSE
chr1	45226084	G	A	0.00970	KIF2C	+	FALSE
chr4	39551166	T	C	0.00309	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	145369550	A	G	0.00031	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr2	206987738	T	C	0.00322		.	FALSE	AluJb	SINE,Alu
chr12	51324122	A	G	0.00226	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr1	31344952	C	T	0.00544	SDC3	-	FALSE
chr3	52237970	C	T	0.00017	ALAS1	+	FALSE
chr1	86049391	T	A	0.00019	CYR61	+	FALSE
chr3	179117128	T	C	0.00239	GNB4	-	TRUE	AluSz	SINE,Alu
chr7	91742142	C	A	0.00478	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr3	197682723	T	A	0.00686	IQCG	-	FALSE
chr1	144828688	C	T	0.00024	NBPF20,NBPF9	+	FALSE
chr1	16920002	G	C	0.00383	NBPF1	-	FALSE
chr4	152025793	T	A	0.00675	RPS3A	+	FALSE
chr2	85837797	T	C	0.00097	USP39,C2orf68	+,-	FALSE	AluSx	SINE,Alu
chr1	143231313	G	A	0.00137		.	FALSE
chr15	90627429	T	C	0.00013	IDH2	-	FALSE
chr2	170497651	C	T	0.00195		.	FALSE
chr1	144606963	G	T	0.00337	NBPF20	+	FALSE
chr17	1684352	T	C	0.00793	SMYD4	-	TRUE	AluSx1	SINE,Alu
chr1	51822219	G	A	0.00017	EPS15	-	FALSE
chr17	8378694	A	C	0.00735	MYH10	-	FALSE
chr14	75202950	A	G	0.00307	FCF1	+	TRUE	AluSx	SINE,Alu
chr1	9324670	A	G	0.00734	H6PD	+	FALSE
chr1	26308882	A	G	3.99595E-05	PAFAH2	-	FALSE
chr10	3208557	A	G	0.00128	PITRM1	-	FALSE
chr3	15113519	C	T	0.00108	RBSN	-	FALSE
chr1	86817074	G	T	9.65311E-06	ODF2L	-	FALSE	L1PA7	SINE,Alu
chr1	145368665	G	A	0.00031	NBPF20,NBPF10	+	FALSE
chr6	160101733	T	C	0.00784	SOD2	-	TRUE	AluSz	SINE,Alu
chr1	154321623	G	A	0.00782	ATP8B2	+	FALSE
chr1	26143725	A	T	0.00920	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	10042987	A	G	0.00261	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr19	59095469	A	G	5.44182E-05	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr17	7482325	T	A	5.04428E-06		.	FALSE
chr1	145511796	T	G	0.00173	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	(T)n	SINE,Alu
chr1	175128444	C	A	0.00036	KIAA0040	-	FALSE
chr2	37330368	T	C	0.00069		.	FALSE	AluSq2	SINE,Alu
chr1	27434251	G	A	0.00504	SLC9A1	-	FALSE
chr1	15989141	C	G	0.00364		.	FALSE
chr16	89630630	C	T	0.00296	RPL13	+	FALSE
chr1	115248084	C	T	0.00171	NRAS	-	FALSE
chr1	10520130	T	C	0.00355		.	FALSE	AluSx	SINE,Alu
chr16	81064611	A	G	0.00075	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	27107651	A	T	0.00200	ARID1A	+	FALSE	(A)n	SINE,Alu
chr2	120022385	C	T	0.00184	STEAP3	+	FALSE
chr1	2282776	G	C	0.00011	MORN1,LOC100129534	-	FALSE
chr2	132279046	G	T	0.00967	LOC150776	+	FALSE
chr1	10521172	T	C	0.00244	DFFA	-	TRUE	AluY	SINE,Alu
chr1	1419690	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr2	206986972	T	C	0.00462		.	FALSE	AluJr	SINE,Alu
chr3	24019990	A	G	0.00308	NR1D2	+	FALSE
chr9	102744698	G	T	0.00301	ERP44	-	FALSE
chr8	117858600	T	A	0.00015	RAD21	-	FALSE
chr1	93603196	G	A	0.00627	MTF2	+	FALSE
chr2	42577806	T	A	0.00276	COX7A2L	-	FALSE
chr1	19543247	T	C	5.35430E-06	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr17	45761110	G	T	0.00816		.	FALSE
chr1	26608008	T	A	0.00496	SH3BGRL3	+	FALSE
chr1	26608016	G	A	1.44245E-06		.	FALSE
chr1	16928737	C	T	0.00796	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr1	112266790	C	T	0.00892	FAM212B	-	FALSE
chr1	179044309	A	G	0.00558	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	66100450	G	A	0.00528	LEPR	+	FALSE
chr6	44417136	A	G	0.00644	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	19542250	T	C	3.30618E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	53291420	A	G	0.00069	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	203771852	G	T	0.00883	ZC3H11A	+	FALSE	(T)n	SINE,Alu
chr1	1595586	T	C	0.00206	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	209605646	A	C	0.00478	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr3	133538762	A	T	0.00804	SRPRB	+	FALSE
chr4	2940364	T	C	0.00329	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	46077345	A	G	0.00024	NASP	+	TRUE	AluSc8	SINE,Alu
chr12	69160574	A	G	0.00891		.	FALSE	AluJb	SINE,Alu
chr1	24798089	G	A	0.00815	NIPAL3	+	FALSE
chr12	49745425	A	G	0.00489	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr12	125512218	A	G	0.00392		.	FALSE	AluSx1	SINE,Alu
chr1	225707043	T	C	2.18813E-07	ENAH	-	FALSE
chr3	10192784	A	G	1.73909E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr6	31132911	C	T	0.00000		.	FALSE
chr2	99992822	A	C	0.00266	EIF5B	+	FALSE
chr3	196079390	T	C	2.00948E-06		.	FALSE	AluSx	SINE,Alu
chr1	67874696	T	C	0.00014	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr12	27953266	G	T	0.00198	KLHL42	+	FALSE
chr4	184238324	G	A	0.00870	WWC2	+	FALSE
chr1	16889138	T	C	0.00356	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	11722688	G	A	0.00076	FBXO44	+	FALSE
chr3	112299732	A	G	0.00189	SLC35A5	+	FALSE
chr1	95362514	G	T	0.00658	CNN3	-	FALSE

RBP	ABCF1
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR721MXZ
Platform	HiSeq
Pubmed ID	32252787

ABCF1 - Target Gene Network