RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr15	42859922	A	G	0.00731	HAUS2	+	TRUE	AluSx1	SINE,Alu
chr11	118915753	T	C	8.93388E-07	HYOU1	-	FALSE
chr1	109535117	C	T	0.00211	WDR47	-	FALSE
chr10	1086804	T	A	0.00821	IDI2-AS1,IDI1	+,-	FALSE
chr17	43002237	C	A	0.00141	KIF18B	-	FALSE
chr1	237064432	C	G	0.00019	MTR	+	FALSE
chr3	141879810	T	C	0.00348	GK5	-	FALSE	AluJr	SINE,Alu
chr5	96372165	G	A	0.00149		.	FALSE
chr3	98299365	T	G	3.92075E-11	CPOX	-	FALSE
chr1	19543353	T	C	0.00377	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	99812815	A	G	0.00245	MRPL30	+	TRUE	AluJb	SINE,Alu
chr2	191065246	T	A	0.00594	C2orf88	+	FALSE
chr2	203741065	T	C	2.92684E-06		.	FALSE
chr1	25688276	A	G	0.00187	TMEM50A	+	FALSE
chr3	88104072	T	A	0.00815	CGGBP1	-	FALSE
chr1	1344893	A	G	0.00186		.	FALSE	AluSg	SINE,Alu
chr1	6695423	T	G	9.25675E-05	THAP3,DNAJC11	+,-	FALSE
chr7	20177664	T	C	0.00089	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr4	38946758	G	A	0.00294	FAM114A1	+	FALSE
chr10	75008815	T	C	5.77576E-09	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	2522392	G	A	0.00227	FAM213B,MMEL1	+,-	FALSE
chr1	45975740	C	G	0.00096	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr5	122165482	C	T	0.00367	SNX2	+	FALSE	(AC)n	SINE,Alu
chr11	119533726	A	G	0.00169	NECTIN1	-	FALSE
chr1	145512951	A	G	4.65248E-05	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr2	86249961	T	C	0.00262	LOC90784	-	TRUE	AluJr	SINE,Alu
chr19	11257673	T	C	0.00155	SPC24	-	TRUE	AluSp	SINE,Alu
chr5	94050487	T	A	0.00380	MCTP1	-	FALSE
chr1	1252441	T	C	0.00086	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr3	33187831	C	T	6.36740E-05	CRTAP	+	FALSE
chr20	45839074	A	T	0.00019	ZMYND8	-	FALSE	(T)n	SINE,Alu
chr1	160967855	T	C	0.00042	F11R	-	TRUE	AluSp	SINE,Alu
chr3	57612180	T	C	0.00018	DENND6A,PDE12	+,-	FALSE	AluSp	SINE,Alu
chr7	299881	A	G	1.23967E-06	FAM20C	+	FALSE
chr3	10005159	A	T	0.00939	EMC3	-	FALSE	(AT)n	SINE,Alu
chr1	33071146	A	G	0.00899	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr1	10517635	T	C	0.00124		.	FALSE	AluSx1	SINE,Alu
chr1	6259433	G	A	0.00522	RPL22	-	FALSE	G-rich	SINE,Alu
chr6	160101733	T	C	0.00784	SOD2	-	TRUE	AluSz	SINE,Alu
chr1	19199221	C	T	0.00676	ALDH4A1	-	FALSE
chr9	131872860	C	T	0.00141	CRAT	-	FALSE
chr1	16932368	T	A	0.00336	NBPF1	-	FALSE	MLT1F-int	SINE,Alu
chr5	176887511	A	C	0.00662	DBN1	-	FALSE
chr4	17628548	A	G	0.00991		.	FALSE	AluSz	SINE,Alu
chr16	48388382	A	G	0.00301	MIR5095	+	TRUE	AluSz	SINE,Alu
chr1	11141187	C	G	0.00814	EXOSC10	-	FALSE
chr4	79832870	A	T	0.00655	BMP2K	+	FALSE
chr17	36936846	C	T	0.00277	PIP4K2B	-	FALSE
chr1	46076599	A	G	0.00116	NASP	+	TRUE	AluSx	SINE,Alu
chr3	10285030	G	A	0.00384	IRAK2	+	FALSE
chr19	65489	C	A	0.00494	WASH5P	-	FALSE	L2b	SINE,Alu
chr1	100489452	A	G	0.00741	SLC35A3	+	TRUE	AluSc	SINE,Alu
chr1	894378	T	A	0.00068	NOC2L	-	FALSE
chr5	14510071	G	T	0.00130	TRIO	+	FALSE
chr1	15904318	C	T	9.04121E-06	AGMAT	-	FALSE
chr1	109818161	C	T	0.00840	CELSR2	+	FALSE
chr6	31595882	C	A	0.00450		.	FALSE
chr2	206987136	T	C	0.00189		.	FALSE	AluSx	SINE,Alu
chr4	57327017	A	G	4.29594E-07	PAICS	+	TRUE	AluSx1	SINE,Alu
chr14	53242354	T	C	3.85910E-06	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr1	100440553	A	G	0.00553	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr1	43272842	A	T	5.86577E-06	SVBP	-	FALSE
chr1	91486838	G	C	0.00514	ZNF644	-	FALSE
chr3	136573440	A	G	0.00038	NCK1-AS1,SLC35G2	+,-	FALSE
chr16	22296860	A	G	0.00041	EEF2K	+	TRUE	AluJo	SINE,Alu
chr2	85776644	T	C	0.00127	GGCX	-	TRUE	AluSz6	SINE,Alu
chr3	48787052	T	C	0.00226	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	148595665	A	G	0.00378	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr1	203821865	C	T	0.00222	ZC3H11A	+	FALSE
chr1	46033514	G	A	0.00073	AKR1A1	+	FALSE	AluYk3	SINE,Alu
chr3	196077460	G	T	0.00416		.	FALSE
chr1	68168152	C	T	0.00258	GNG12	-	FALSE
chr5	125961532	A	G	0.00039	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	44035352	C	T	0.00055	PTPRF	+	FALSE
chr2	234749258	T	C	0.00710	HJURP	-	FALSE
chr5	40830050	T	C	0.00042		.	FALSE	AluSp	SINE,Alu
chr5	41917695	C	T	0.00019	C5orf51	+	FALSE
chr6	71298639	A	G	0.00339		.	FALSE	AluSp	SINE,Alu
chr17	4929004	A	G	0.00030	KIF1C	+	TRUE	AluY	SINE,Alu
chr21	34729969	A	G	0.00077	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr1	25688276	A	G	0.00015	TMEM50A	+	FALSE
chr1	200521297	C	T	0.00133	KIF14	-	FALSE	(T)n	SINE,Alu
chr1	144053662	T	G	0.00173		.	FALSE
chr6	43738977	C	T	0.00088	VEGFA	+	FALSE
chr1	20976023	T	C	6.30669E-06	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	28825337	A	G	0.00191	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr7	29960462	G	A	5.89775E-06	SCRN1	-	FALSE
chr2	220037666	A	G	0.00796	CNPPD1	-	FALSE
chr1	225707044	C	T	1.61826E-07	ENAH	-	FALSE
chr6	74134008	T	C	0.00337		.	FALSE	AluY	SINE,Alu
chr15	42861741	A	G	0.00200	HAUS2	+	TRUE	AluJb	SINE,Alu
chr9	125609939	A	T	0.00693		.	FALSE
chr16	5134599	G	C	0.00355	ALG1,EEF2KMT	+,-	FALSE
chr3	156258319	T	C	0.00012	SSR3	-	TRUE	AluYk3	SINE,Alu
chr8	11700231	T	C	1.53992E-05	CTSB	-	TRUE	AluSq2	SINE,Alu
chr1	32372358	C	T	0.00303	PTP4A2	-	FALSE	(CA)n	SINE,Alu
chr7	21941583	C	A	0.00499	CDCA7L	-	FALSE
chr5	31554098	G	T	2.66454E-15	C5orf22	+	FALSE
chr1	9162348	T	C	0.00359		.	FALSE	AluSx	SINE,Alu
chr7	158719116	A	G	0.00824	WDR60	+	FALSE
chr14	21929014	T	C	0.00749	RAB2B	-	TRUE	AluSp	SINE,Alu
chr16	10625437	T	C	0.00028	EMP2	-	TRUE	AluSx	SINE,Alu
chr6	143661166	A	C	0.00536	AIG1	+	FALSE
chr1	16927369	C	T	0.00943	NBPF1	-	FALSE
chr1	1677253	T	C	0.00145	SLC35E2	-	FALSE
chr1	145693061	A	G	0.00158	NBPF20,NBPF10	+	TRUE	AluSz6	SINE,Alu
chr6	18264355	G	A	0.00872	DEK	-	FALSE
chr14	21929044	T	C	3.48024E-06	RAB2B	-	TRUE	AluSp	SINE,Alu
chr8	42876058	A	G	0.00029	HOOK3	+	TRUE	AluSq2	SINE,Alu
chr17	73886219	T	C	8.52474E-05	TRIM65	-	TRUE	FRAM	SINE,Alu
chrX	84532996	T	G	0.00801	POF1B	-	FALSE
chr7	99917927	T	C	0.00320	SPDYE3	+	FALSE	AluJb	SINE,Alu
chr4	2940265	T	C	4.71601E-06	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	144595886	G	A	0.00205	NBPF20	+	FALSE	AluJb	SINE,Alu
chr3	45722047	A	G	0.00085	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr9	14764	C	T	0.00491	WASH1	-	FALSE
chr6	44417142	A	G	0.00144	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr9	132268442	A	G	0.00642	LINC00963	+	TRUE	AluJb	SINE,Alu
chr2	206987738	T	C	0.00322		.	FALSE	AluJb	SINE,Alu
chr11	75526481	C	A	0.00995	UVRAG	+	FALSE
chr12	66516911	A	T	0.00067	LLPH	-	FALSE
chr1	155142927	A	G	0.00877	KRTCAP2	-	FALSE
chr9	96438975	T	C	0.00042	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr1	10517653	T	C	0.00792		.	FALSE	AluSx1	SINE,Alu
chr2	101010082	G	C	0.00965	CHST10	-	FALSE
chr4	39550978	T	C	0.00023	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr10	104417856	T	A	0.00616	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr10	73994158	A	G	0.00110	ANAPC16	+	TRUE	AluJr	SINE,Alu
chr6	109784327	T	C	2.38076E-05	MICAL1,ZBTB24	-	TRUE	AluSg	SINE,Alu
chr5	125962568	A	G	0.00015	PHAX	+	TRUE	AluSz	SINE,Alu
chr1	26143725	A	T	0.00920	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	32833541	T	C	0.00903	BSDC1	-	TRUE
chr1	17393889	A	G	0.00390	PADI2	-	FALSE
chr4	17804872	T	C	0.00096	DCAF16	-	TRUE	AluSx	SINE,Alu
chr16	74655596	T	G	0.00028	RFWD3	-	FALSE	AluSx	SINE,Alu
chr1	20982631	G	A	0.00133	DDOST	-	FALSE
chr1	16889502	T	C	0.00178	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	28662213	A	G	0.00013	MED18	+	TRUE	AluSq2	SINE,Alu
chr4	129795663	T	A	0.00165	JADE1	+	FALSE
chr3	179042832	A	G	0.00308	ZNF639	+	TRUE	AluSp	SINE,Alu
chr1	1345002	A	G	0.00141		.	FALSE	AluSg	SINE,Alu
chr1	91990450	A	T	0.00091	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr1	10518591	A	T	0.00545		.	FALSE
chr1	231557255	C	G	0.00056	EGLN1	-	FALSE	(GCC)n	SINE,Alu
chr1	28836900	A	G	0.00018	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr2	56150864	C	T	0.00615	EFEMP1	-	FALSE
chr8	101932094	T	A	0.00288	YWHAZ	-	FALSE	MER34B-int	SINE,Alu
chr2	233446265	T	C	0.00177	EIF4E2	+	FALSE
chr2	232319583	C	A	0.00801	NCL	-	FALSE	A-rich	SINE,Alu
chr2	30863651	A	T	0.00366	LCLAT1	+	FALSE
chr3	15114759	G	A	0.00595	RBSN	-	FALSE
chr20	4680094	C	T	0.00438	PRNP	+	FALSE
chr4	152025793	T	A	0.00675	RPS3A	+	FALSE
chr1	150446673	A	G	2.11627E-07	RPRD2	+	FALSE
chr1	56961756	A	G	0.00265	PLPP3	-	FALSE
chr3	179117164	T	C	0.00234	GNB4	-	FALSE	AluSz	SINE,Alu
chr1	24935337	A	G	0.00773	NCMAP	+	TRUE	AluJb	SINE,Alu
chr1	118167515	C	T	3.85084E-05	FAM46C	+	FALSE
chr1	10517313	T	C	0.00661		.	FALSE	AluJr	SINE,Alu
chr1	145281543	C	T	0.00028	NBPF20,NOTCH2NL	+	FALSE
chr4	3770069	G	C	0.00018	ADRA2C	+	FALSE
chr7	99649179	A	G	0.00360	ZSCAN21	+	TRUE	AluY	SINE,Alu
chr2	204055625	G	A	0.00426	NBEAL1	+	FALSE
chr3	48632596	A	G	0.00666		.	FALSE
chr1	211917176	C	T	0.00498	LPGAT1	-	FALSE
chr3	75474643	T	C	0.00850	FAM86DP	-	TRUE	AluJo	SINE,Alu
chr1	40214261	A	G	0.00879	PPIE	+	TRUE	AluSq2	SINE,Alu
chr1	16889513	T	C	0.00777	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	6583457	T	C	0.00075	NOL9	-	TRUE	AluSq	SINE,Alu
chr8	91637754	A	T	0.00297	TMEM64	-	FALSE
chr3	124488267	G	A	3.46260E-06	ITGB5	-	FALSE
chr1	53288924	A	G	0.00099	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr3	101576175	T	C	0.00246	NFKBIZ	+	FALSE
chr19	65146	G	A	0.00761	WASH5P	-	FALSE
chr10	89623860	C	G	0.00071	PTEN	+	FALSE	(CGG)n	SINE,Alu
chr2	191745643	A	C	0.00011	GLS	+	FALSE	(GCA)n	SINE,Alu
chr1	116234313	A	G	0.00016	VANGL1	+	FALSE
chr1	33149495	A	G	0.00652	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	118502750	T	C	0.00922	WDR3,SPAG17	+,-	FALSE	(GT)n	SINE,Alu
chr1	36535590	A	G	0.00301		.	FALSE	AluSx1	SINE,Alu
chr7	2294401	A	G	0.00035	SNX8	-	FALSE
chr12	133298355	A	G	0.00024	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	19585493	A	G	0.00199	MRTO4	+	TRUE	AluSc8	SINE,Alu
chrX	77083617	T	C	3.46806E-05	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr5	174955746	G	C	0.00768	SFXN1	+	FALSE
chr4	39552646	T	C	0.00555	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	36068231	T	C	0.00121	PSMB2	-	TRUE	AluSc	SINE,Alu
chr17	1683647	T	C	0.00763	SMYD4	-	TRUE	AluJb	SINE,Alu
chr2	206983132	T	C	0.00861		.	FALSE	AluJb	SINE,Alu
chr16	10623558	T	C	0.00103	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	145512925	A	G	0.00238	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr9	128729384	G	C	0.00059	PBX3	+	FALSE
chr3	15113694	T	C	0.00622	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	16890607	G	A	0.00869	NBPF1	-	FALSE
chr1	1252468	T	C	0.00096	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr15	42859452	A	G	0.00123	HAUS2	+	TRUE	AluJb	SINE,Alu
chr1	28835201	C	T	0.00371	SNHG3,RCC1,SNORA73B	+	FALSE	U17	SINE,Alu
chr2	101587455	C	T	0.00178	NPAS2	+	FALSE
chr16	75479910	T	C	0.00026	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr1	54231850	T	A	0.00681	NDC1	-	FALSE
chr2	201774342	T	C	0.00127		.	FALSE	AluSz	SINE,Alu
chr2	206861649	T	A	0.00066	INO80D	-	FALSE
chr1	33148740	A	G	0.00210	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	1653093	A	G	0.00768	CDK11B,CDK11A	-	FALSE	L2	SINE,Alu
chr5	37290400	T	C	0.00282		.	FALSE	AluSz	SINE,Alu
chr1	67874696	T	C	0.00014	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr5	112312528	T	C	0.00827	DCP2	+	FALSE
chr1	33148216	A	G	0.00824	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	28261657	C	T	0.00327	SMPDL3B	+	FALSE
chr1	53292607	T	A	0.00680	ZYG11B	+	FALSE
chr2	11966317	T	C	0.00011	LPIN1	+	FALSE
chr3	156258230	T	C	0.00176	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	54412181	T	C	0.00524	LRRC42	+	FALSE
chr1	1594498	C	T	0.00024	CDK11B,SLC35E2B	-	FALSE
chr7	107789927	T	C	0.00111	NRCAM	-	FALSE
chr1	95363041	C	T	0.00105	CNN3	-	FALSE
chr16	10624996	T	C	0.00059	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	1595074	T	C	0.00296	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr7	123390058	A	G	0.00102		.	FALSE
chr5	74669972	C	T	0.00113	COL4A3BP	-	FALSE
chr1	154989595	T	C	0.00264	ZBTB7B	+	FALSE
chr4	39289308	G	C	0.00509	RFC1	-	FALSE
chr6	33384326	A	T	0.00678		.	FALSE
chr1	146650289	C	T	0.00024	PDIA3P1	+	FALSE
chr2	54120820	G	A	0.00262	PSME4	-	FALSE
chr11	125452298	A	G	0.00583	EI24,STT3A-AS1	+,-	FALSE
chr1	19984100	G	C	0.00037	MINOS1-NBL1,NBL1	+	FALSE
chr1	38327586	C	T	0.00198	INPP5B	-	FALSE	AluSx3	SINE,Alu
chr1	3545191	C	T	0.00597	TPRG1L	+	FALSE
chr3	24019987	A	C	0.00563	NR1D2	+	FALSE
chr1	60340527	G	A	0.00027	HOOK1	+	FALSE
chr1	59121036	A	C	0.00467	MYSM1	-	FALSE
chr4	17802783	T	C	0.00509	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	19542456	T	C	0.00193	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	28865502	G	A	0.00073	RCC1	+	FALSE
chr1	9162224	T	C	0.00372		.	FALSE	AluSx	SINE,Alu
chr1	16524869	T	C	0.00164	ARHGEF19	-	FALSE
chr1	138156	G	T	0.00413	LOC729737	-	FALSE
chr1	11979807	C	A	0.00574	KIAA2013	-	FALSE
chr1	145100772	A	G	0.00945	NBPF20,SEC22B	+	TRUE	AluSg4	SINE,Alu
chr5	21883662	T	G	0.00108	CDH12	-	FALSE
chr2	242384528	G	T	2.14488E-07	FARP2	+	FALSE	AluJr	SINE,Alu
chr19	59095573	A	G	0.00169	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr4	95588274	G	A	0.00095	PDLIM5	+	FALSE
chr5	125961623	A	G	6.78430E-09	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	21545089	C	T	0.00834	ECE1	-	FALSE	AluSx1	SINE,Alu
chr14	64152514	T	C	1.52259E-06	SGPP1	-	TRUE	(TA)n	SINE,Alu

RBP	XRCC5
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR732IYM
Platform	HiSeq
Pubmed ID	32252787

XRCC5 - Target Gene Network