RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	197004439	A	G	0.00034	STK17B	-	FALSE
chr2	37331277	T	C	0.00366		.	FALSE	AluSx1	SINE,Alu
chr2	232319611	A	T	3.84700E-07	NCL	-	FALSE
chr1	11347164	A	C	0.00667	UBIAD1	+	FALSE
chr1	168220489	A	G	0.00525		.	FALSE	AluSz6	SINE,Alu
chr1	28859265	C	G	0.00030	RCC1	+	FALSE
chr1	28826150	A	G	0.00152	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr12	7045885	A	C	0.00473	ATN1	+	FALSE	(CAG)n	SINE,Alu
chr4	39551167	T	C	0.00361	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	10520649	T	C	0.00629	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	28826128	A	G	0.00483	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	145369706	T	C	0.00186	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	20224152	G	A	0.00581	OTUD3	+	FALSE
chr1	1662793	T	C	0.00489	SLC35E2	-	TRUE	AluY	SINE,Alu
chr8	128944717	G	T	0.00091	PVT1	+	FALSE
chr1	144599819	C	T	0.00682	NBPF20	+	FALSE
chr2	128952015	A	G	0.00086	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	179989742	G	C	9.63603E-05	CEP350	+	FALSE
chr3	73112378	A	G	0.00261	PPP4R2,EBLN2	+	FALSE
chr1	16944809	G	C	9.47535E-05	CROCCP2	-	FALSE
chr2	164466038	C	A	0.00021	FIGN	-	FALSE
chr1	67874731	T	C	0.00125	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr4	39550977	T	C	3.35724E-05	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr5	177019196	G	C	0.00509	TMED9	+	FALSE	(GCG)n	SINE,Alu
chr12	100452832	C	T	0.00386	UHRF1BP1L	-	FALSE
chr4	187509420	G	A	0.00121	FAT1	-	FALSE
chr1	40538317	C	A	0.00178	CAP1	+	FALSE
chr1	242012149	C	T	0.00510	EXO1	+	FALSE
chr1	6582701	T	C	1.54245E-05	NOL9	-	TRUE	AluSg	SINE,Alu
chr3	48787108	T	C	0.00291	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	28661657	A	G	0.00011	MED18	+	TRUE	AluSg	SINE,Alu
chr2	208619675	A	G	0.00012	CCNYL1	+	TRUE	AluJb	SINE,Alu
chr19	11256702	T	C	6.98885E-06	SPC24	-	TRUE	AluJr4	SINE,Alu
chr19	58357211	A	G	0.00041	ZNF587B	+	TRUE	AluSx3	SINE,Alu
chr17	74556011	A	G	0.00819	SNHG16	+	TRUE	AluSq2	SINE,Alu
chr1	148556743	G	A	0.00402		.	FALSE
chr2	206983255	T	C	0.00246		.	FALSE	AluJb	SINE,Alu
chr14	64152514	T	C	1.52259E-06	SGPP1	-	TRUE	(TA)n	SINE,Alu
chr1	142804438	G	T	0.00618		.	FALSE
chr2	238005476	C	T	0.00456	COPS8	+	FALSE
chrX	106184603	A	T	0.00717	MORC4	-	FALSE	(GA)n	SINE,Alu
chr1	145323656	A	T	3.43611E-06	NBPF20,NBPF10	+	FALSE
chr1	10517672	T	C	0.00257		.	FALSE	AluSx1	SINE,Alu
chr17	79674375	C	T	0.00129	MRPL12	+	FALSE
chr3	88104073	G	C	0.00887	CGGBP1	-	FALSE
chr19	57804719	A	C	0.00361	ZNF460	+	FALSE
chr4	17626174	T	A	0.00534	MED28	+	FALSE
chr5	43377390	T	C	0.00062	CCL28	-	TRUE	AluSz	SINE,Alu
chr1	32793185	C	T	0.00015	HDAC1	+	FALSE
chr20	54963756	T	C	0.00476	AURKA	-	TRUE	AluSq10	SINE,Alu
chr7	102119322	T	C	0.00834	POLR2J	-	FALSE
chr19	58375195	A	G	0.00080	ZNF587	+	TRUE	AluSx4	SINE,Alu
chr2	37330620	T	C	0.00216		.	FALSE	AluSq2	SINE,Alu
chr10	72187740	C	A	0.00668	EIF4EBP2	+	FALSE
chr3	123332546	C	G	0.00964	MYLK-AS1,MYLK	+,-	FALSE
chr1	32661600	C	T	0.00584	TXLNA	+	FALSE	(T)n	SINE,Alu
chr1	120612037	T	G	0.00044	NOTCH2	-	FALSE	(CGC)n	SINE,Alu
chr1	1595500	T	C	0.00845	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr5	134302899	A	G	0.00025		.	FALSE	AluSq2	SINE,Alu
chr17	49041732	T	C	0.00135	SPAG9	-	TRUE	AluSx	SINE,Alu
chr1	94352553	C	T	0.00136	GCLM	-	FALSE	AluSx1	SINE,Alu
chr17	7485341	C	A	0.00701	CD68,LOC100996842	+,-	FALSE
chr6	160100882	T	C	0.00494	SOD2	-	TRUE	AluSz	SINE,Alu
chr1	33145958	G	T	0.00080	SYNC,RBBP4	+,-	FALSE	(T)n	SINE,Alu
chr1	53289940	A	G	0.00694	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	205272926	C	T	0.00690	NUAK2	-	FALSE
chr2	101893244	C	A	0.00332	RNF149	-	FALSE	(A)n	SINE,Alu
chr1	33086876	T	C	0.00075	ZBTB8OS	-	TRUE	AluY	SINE,Alu
chr1	201860626	A	G	0.00599	SHISA4	+	FALSE
chr1	145689812	A	G	0.00431	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr1	230979207	C	A	0.00643	C1orf198	-	FALSE
chr1	23519504	T	A	3.21384E-05	HTR1D	-	FALSE
chr1	1469782	G	C	0.00544	ATAD3A	+	FALSE
chr18	691521	T	C	0.00150	ENOSF1	-	TRUE	AluJr	SINE,Alu
chr1	27992824	G	A	0.00503	IFI6	-	FALSE
chr1	26755136	A	G	0.00279	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr1	148010952	C	T	0.00393	NBPF8	-	FALSE
chr1	144828795	C	G	0.00887	NBPF20,NBPF9	+	FALSE
chr1	145500925	T	A	0.00997	NBPF20,NBPF10,LIX1L	+	FALSE
chr1	120163831	A	G	0.00706	ZNF697	-	FALSE
chr1	27202845	T	C	0.00034		.	FALSE	AluSq2	SINE,Alu
chr2	37327702	T	C	2.28397E-07		.	FALSE
chr2	272203	C	T	1.58440E-08	ACP1	+	FALSE
chr1	27107948	G	A	0.00177	ARID1A	+	FALSE
chr1	28662253	A	G	0.00117	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	144828857	C	G	4.37583E-07	NBPF20,NBPF9	+	FALSE
chr5	180001389	G	A	0.00138	CNOT6	+	FALSE
chr3	98518158	A	T	1.44910E-06	DCBLD2	-	FALSE
chr11	31452571	A	G	0.00084	DNAJC24	+	TRUE
chr1	10521200	T	C	0.00096	DFFA	-	TRUE	AluY	SINE,Alu
chr1	110951224	A	G	0.00352	LAMTOR5-AS1	+	TRUE	AluJr	SINE,Alu
chr3	158547143	G	A	0.00178	MFSD1	+	FALSE
chr1	26796922	G	C	0.00401	DHDDS	+	FALSE	FLAM_C	SINE,Alu
chr2	176042865	G	T	0.00887	ATP5G3	-	FALSE
chr12	133298254	A	G	0.00849	PGAM5	+	TRUE	AluSp	SINE,Alu
chr12	12796592	A	C	0.00801	CREBL2	+	FALSE
chr1	16918734	G	C	0.00083	NBPF1	-	FALSE
chr1	20978294	T	A	0.00985	PINK1-AS,DDOST	-	FALSE
chr20	25428750	A	G	3.17139E-06	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	11734730	C	T	4.90909E-09	MAD2L2	-	FALSE
chr1	59121768	G	C	0.00196	MYSM1	-	FALSE
chr6	158613393	A	T	0.00108	GTF2H5	+	FALSE
chr6	90344221	T	C	0.00809	LYRM2	-	TRUE	AluJo	SINE,Alu
chr1	152884246	G	T	0.00536	IVL	+	FALSE
chr1	899810	G	A	2.29962E-09	KLHL17	+	FALSE
chr19	18476176	A	G	0.00452	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr16	10623577	T	C	0.00408	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	32661578	C	T	0.00623	TXLNA	+	FALSE	(T)n	SINE,Alu
chr7	75958151	G	C	0.00250	YWHAG	-	FALSE
chr6	42856056	A	G	0.00602	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	104097685	C	T	0.00028	RNPC3,AMY2B	+	FALSE
chr9	136335345	G	A	0.00490	CACFD1	+	FALSE	(TG)n	SINE,Alu
chr7	16823610	T	G	0.00765	TSPAN13	+	FALSE
chr1	100440553	A	G	0.00553	SLC35A3	+	TRUE	AluJb	SINE,Alu
chr1	148594563	G	T	0.00169	NBPF15	+	FALSE
chr12	125511960	A	G	6.81205E-06	THRIL	-	FALSE	AluSx1	SINE,Alu
chr2	207146631	C	A	9.52905E-05	ZDBF2	+	FALSE
chr2	204055454	T	C	0.00293	NBEAL1	+	FALSE
chr1	19586501	A	G	0.00055	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	153617980	A	G	0.00272	CHTOP	+	FALSE
chr9	133579734	A	G	0.00129	EXOSC2	+	TRUE	AluSx3	SINE,Alu
chr6	150047430	T	C	0.00107	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	169811639	G	C	0.00134	C1orf112	+	FALSE
chr1	46752091	G	A	0.00035	LRRC41	-	FALSE
chr10	75009781	T	C	9.15447E-06	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr2	101893247	C	A	0.00237	RNF149	-	FALSE	(A)n	SINE,Alu
chr1	244572645	T	G	0.00103	ADSS	-	FALSE
chr3	10193796	A	G	0.00291	VHL	+	TRUE	AluSx	SINE,Alu
chr2	37330431	T	C	0.00231		.	FALSE	AluSq2	SINE,Alu
chrX	16781156	A	G	0.00061		.	FALSE	AluJo	SINE,Alu
chr5	32404176	C	T	0.00342	ZFR	-	FALSE
chr2	86252043	T	C	0.00909	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	990984	G	A	0.00018	AGRN	+	FALSE
chr19	7084638	A	G	0.00508	ZNF557	+	TRUE	AluJb	SINE,Alu
chr1	231468953	G	A	0.00085	EXOC8	-	FALSE
chr1	12677547	G	A	0.00543	DHRS3	-	FALSE	(A)n	SINE,Alu
chr1	28835934	A	G	0.00069	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr12	6572048	A	G	0.00410	VAMP1	-	FALSE
chr12	133297956	A	G	4.23080E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr9	100777799	G	A	0.00675	ANP32B	+	FALSE
chr4	42003671	A	G	0.00535	SLC30A9	+	FALSE
chr1	148241546	G	A	0.00416	NBPF8	-	FALSE	U1	SINE,Alu
chr1	65900357	G	T	0.00041	LEPR,LEPROT	+	FALSE
chr1	87213190	A	C	0.00054	SH3GLB1	+	FALSE
chrX	3526659	C	G	0.00188	PRKX	-	FALSE	(AC)n	SINE,Alu
chr1	1459332	G	A	1.33172E-08	ATAD3A	+	FALSE
chr1	145688663	T	G	0.00081	NBPF20,NBPF10,RNF115	+	FALSE
chr3	45960561	T	A	9.94810E-07	FYCO1	-	FALSE
chr1	6282401	T	C	0.00469	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	241792562	A	G	0.00800	OPN3,CHML	-	FALSE
chr2	178406763	T	C	0.00452	AGPS	+	FALSE
chr1	145693061	A	G	0.00158	NBPF20,NBPF10	+	TRUE	AluSz6	SINE,Alu
chr1	201846630	C	A	7.51318E-05	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	210004332	G	A	0.00813	DIEXF	+	FALSE
chr1	8045340	C	A	0.00242	PARK7	+	FALSE
chr1	145513094	A	G	0.00633	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr9	137330716	A	C	0.00058	RXRA	+	FALSE
chr1	247319707	C	T	3.10675E-05	ZNF124	-	FALSE
chr1	16576295	G	A	0.00139	FBXO42	-	FALSE	A-rich	SINE,Alu
chr1	148753329	A	G	7.42327E-05		.	FALSE
chr19	9672981	T	C	0.00041		.	FALSE	AluSx3	SINE,Alu
chr2	217366866	A	G	0.00247		.	FALSE	AluSz6	SINE,Alu
chr1	24086807	T	C	0.00352	TCEB3	+	FALSE	(T)n	SINE,Alu
chr1	144932197	T	A	0.00430	NBPF20,PDE4DIP	+,-	FALSE
chr2	32535873	A	G	0.00270		.	FALSE	AluJb	SINE,Alu
chr1	87200770	C	T	0.00623	SH3GLB1	+	FALSE
chr1	237065326	C	T	0.00376	MTR	+	FALSE
chr2	37330476	T	C	0.00269		.	FALSE	AluSq2	SINE,Alu
chr1	110170896	T	C	5.12229E-06	AMPD2	+	FALSE
chr19	18306990	G	C	0.00090	MPV17L2	+	FALSE
chr1	145100851	A	G	0.00066	NBPF20,SEC22B	+	FALSE	AluSg4	SINE,Alu
chr1	179041693	T	C	0.00845	FAM20B	+	FALSE
chr1	207943385	A	G	0.00558	CD46	+	TRUE	AluSx1	SINE,Alu
chr3	196556141	G	A	0.00534	PAK2	+	FALSE
chr5	125962568	A	G	0.00015	PHAX	+	TRUE	AluSz	SINE,Alu
chr5	61683960	A	G	0.00491		.	FALSE
chr1	33145989	A	T	0.00548	SYNC,RBBP4	+,-	FALSE
chr1	45975331	A	G	0.00081	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr15	60678712	G	A	0.00801	ANXA2	-	FALSE
chr2	37328016	T	C	5.08368E-07		.	FALSE
chr7	6501830	G	A	0.00217	KDELR2	-	FALSE
chr3	170021210	C	A	0.00015	PRKCI	+	FALSE
chr1	19984346	A	G	0.00071	MINOS1-NBL1,NBL1	+	FALSE
chr2	129024408	G	A	0.00502	HS6ST1	-	FALSE
chr1	53289547	A	G	0.00352	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	24128467	C	T	0.00086	HMGCL	-	FALSE
chr4	5743512	T	C	0.00210	EVC	+	FALSE
chr1	19543309	T	C	0.00769	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	52306079	T	A	0.00606	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr2	128949342	A	G	0.00397	UGGT1	+	TRUE	AluSg	SINE,Alu
chr2	152334389	A	G	0.00308		.	FALSE	AluSq	SINE,Alu
chr6	42856045	A	G	0.00428	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr3	125248838	A	T	0.00899	OSBPL11	-	FALSE
chr15	42192345	T	C	0.00039	EHD4	-	TRUE
chr1	246831356	G	A	0.00616	CNST	+	FALSE
chr4	761850	T	C	0.00026	PCGF3	+	FALSE
chr2	88913273	G	C	0.00152	EIF2AK3	-	FALSE
chr3	14986461	T	C	3.09385E-06	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr3	98518158	A	T	0.00960	DCBLD2	-	FALSE
chr3	8922054	T	C	0.00464	RAD18	-	FALSE
chr1	36386884	C	T	0.00024	AGO1	+	FALSE
chr5	34906692	T	C	0.00021	RAD1	-	TRUE	AluJo	SINE,Alu
chr9	125866691	A	C	0.00177	RABGAP1	+	FALSE
chr7	156762446	G	T	0.00162	NOM1	+	FALSE
chr2	37327590	T	C	0.00063		.	FALSE
chr14	62213926	T	C	0.00226	HIF1A,HIF1A-AS2	+,-	FALSE
chr19	10795968	C	T	0.00700	ILF3	+	FALSE
chr1	86049302	A	G	0.00114	CYR61	+	FALSE
chr5	149823786	C	T	0.00327		.	FALSE
chr17	57281060	A	G	0.00026	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	1650832	A	G	0.00065	CDK11B,CDK11A	-	FALSE
chr1	25893928	T	A	0.00388	LDLRAP1	+	FALSE
chr2	196999052	C	G	0.00358	STK17B	-	FALSE	MER1B	SINE,Alu
chr1	16907328	G	T	0.00973	NBPF1	-	FALSE
chr16	5134599	G	C	0.00355	ALG1,EEF2KMT	+,-	FALSE
chr17	76117147	G	A	0.00606	TMC6	-	FALSE
chr19	12742290	A	G	0.00564		.	FALSE	AluSx	SINE,Alu
chr1	109818162	T	C	0.00253	CELSR2	+	FALSE
chr14	105237680	G	C	6.20821E-05	AKT1	-	FALSE
chr1	1597423	C	T	1.10134E-13	CDK11B,SLC35E2B	-	FALSE
chr3	101399939	G	T	1.18387E-05	RPL24	-	FALSE
chr5	122165512	C	A	0.00276	SNX2	+	FALSE
chr2	109383604	G	A	0.00331	RANBP2	+	FALSE
chr1	16200163	A	G	0.00078	SPEN	+	FALSE
chr2	118583874	C	G	0.00569	DDX18	+	FALSE
chr5	130537933	A	G	0.00084	LYRM7	+	TRUE	AluSp	SINE,Alu
chr1	193054575	C	G	0.00029	TROVE2	+	FALSE	(ATTTT)n	SINE,Alu
chr1	66100450	G	A	0.00528	LEPR	+	FALSE
chr1	155217438	A	T	0.00610	FAM189B	-	FALSE
chr4	154257510	A	C	0.00121	TRIM2	+	FALSE	(A)n	SINE,Alu
chr1	59122056	G	C	1.57132E-06	MYSM1	-	FALSE
chr1	145323668	G	C	0.00241	NBPF20,NBPF10	+	FALSE
chr6	31323203	A	G	2.54151E-09		.	FALSE
chr3	10192784	A	G	1.73909E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr2	109401284	G	C	0.00059	RANBP2	+	FALSE
chr2	208620143	A	G	0.00605	CCNYL1	+	TRUE	EutTc1-N1	SINE,Alu
chr5	139931631	G	C	0.00138	SRA1	-	FALSE
chr15	44751338	G	A	0.00374	CTDSPL2	+	FALSE
chr7	6064007	T	A	0.00551	EIF2AK1	-	FALSE
chr2	201774185	T	C	0.00932		.	FALSE	AluSz	SINE,Alu
chr1	214529742	T	C	6.22071E-05	PTPN14	-	TRUE
chr5	79923788	T	C	0.00693	DHFR	-	TRUE	AluSp	SINE,Alu
chr5	40832549	C	T	2.26031E-05	RPL37	-	FALSE
chr4	165998694	T	C	0.00041	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	19543465	T	C	0.00117	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	225683182	C	T	0.00056	ENAH	-	FALSE
chr1	148004307	T	C	0.00935	NBPF8	-	FALSE
chr1	25554719	G	A	0.00403	SYF2	-	FALSE
chr12	25360463	A	T	0.00118	KRAS	-	FALSE
chr1	184663537	A	C	0.00256	EDEM3	-	FALSE
chr4	2940413	T	C	0.00311	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr5	170837887	T	A	0.00401	NPM1	+	FALSE
chr3	197612267	A	G	0.00341		.	FALSE	AluSp	SINE,Alu
chr1	168213516	A	G	0.00233		.	FALSE	AluSx1	SINE,Alu
chr1	179044216	A	G	0.00277	FAM20B	+	TRUE	AluSx	SINE,Alu
chr17	57279264	A	G	0.00793	PRR11	+	TRUE	AluSq2	SINE,Alu
chr5	139680027	A	G	0.00155	PFDN1	-	FALSE
chr1	32638906	C	T	5.73102E-10	KPNA6	+	FALSE
chr1	10519787	A	T	0.00037		.	FALSE	(A)n	SINE,Alu
chr1	29644328	C	T	0.00014	PTPRU	+	FALSE
chr12	98943018	A	G	0.00283	TMPO	+	TRUE	AluSz	SINE,Alu
chr5	130537789	A	G	0.00822	LYRM7	+	TRUE	AluJb	SINE,Alu
chr1	1337841	C	A	0.00186	MRPL20	-	FALSE
chr1	145512014	A	G	0.00370	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr3	19992312	A	G	0.00798	RAB5A	+	FALSE
chr1	10517290	T	C	0.00119		.	FALSE	AluJr	SINE,Alu
chr5	40832548	A	T	0.00048	RPL37	-	FALSE
chr1	36067925	T	C	0.00103	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	179044181	A	G	0.00790	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	213069114	C	A	0.00681	FLVCR1	+	FALSE
chr11	45827050	G	C	0.00045	SLC35C1	+	FALSE
chr2	206987561	T	C	0.00235		.	FALSE	AluJb	SINE,Alu
chr1	28824065	C	T	0.00345	PHACTR4	+	FALSE
chr2	109401285	G	A	0.00087	RANBP2	+	FALSE
chr1	2125114	C	T	8.70493E-12	FAAP20	-	FALSE
chr2	74348998	A	G	0.00279		.	FALSE	AluSz	SINE,Alu
chr1	53288897	A	G	0.00160	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	6283348	T	C	0.00082	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	16889596	T	C	0.00905	NBPF1	-	TRUE
chr1	16861718	C	T	0.00891	LOC100132147	-	FALSE
chr4	165998642	T	C	0.00036	TMEM192	-	TRUE	AluSg	SINE,Alu
chr7	44917281	T	C	0.00222	PURB	-	TRUE	AluSz	SINE,Alu
chr1	156613517	C	A	0.00011	BCAN	+	FALSE
chr1	33149363	A	G	0.00368	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	156495521	C	A	0.00097	IQGAP3	-	FALSE
chr1	114940216	T	G	0.00074	TRIM33	-	FALSE	(T)n	SINE,Alu
chr2	201842323	T	C	0.00390	FAM126B	-	TRUE	AluJb	SINE,Alu
chr3	30733403	A	T	0.00840	TGFBR2	+	FALSE	(TA)n	SINE,Alu
chr1	228880098	T	A	4.07865E-05	RHOU	+	FALSE
chr16	10624926	T	C	0.00029	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	46117185	C	T	0.00714	GPBP1L1	-	FALSE
chr11	68523055	T	C	0.00524	CPT1A	-	TRUE	AluY	SINE,Alu
chr1	16889620	T	C	0.00884	NBPF1	-	FALSE
chr11	8707397	T	A	0.00046	RPL27A	+	FALSE
chr2	85773623	T	C	0.00203	GGCX	-	TRUE	AluSx1	SINE,Alu
chr1	51434560	G	A	0.00685	CDKN2C	+	FALSE
chr2	219100706	A	G	0.00874	ARPC2	+	TRUE	AluSx1	SINE,Alu
chr14	53243434	T	C	5.94655E-10	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr3	14986104	T	C	0.00307	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	16958063	C	T	0.00246		.	FALSE
chr3	58141791	A	G	0.00696	FLNB	+	FALSE
chr2	206987632	T	C	0.00671		.	FALSE	AluJb	SINE,Alu
chr1	35650014	C	A	0.00012	SFPQ	-	FALSE
chr1	16935130	C	T	0.00155	NBPF1	-	FALSE
chr1	9644558	A	G	0.00644		.	FALSE	AluSx	SINE,Alu
chr15	89803950	C	T	0.00698	FANCI	+	FALSE
chr1	46828700	A	G	0.00805	NSUN4	+	FALSE
chr8	37717121	C	A	0.00087	RAB11FIP1	-	FALSE
chr3	48787909	T	C	6.24209E-06	PRKAR2A	-	TRUE	AluJr	SINE,Alu
chr12	120898658	A	G	0.00372	GATC	+	TRUE	AluY	SINE,Alu
chr22	39259540	G	A	0.00493	CBX6	-	FALSE
chr4	17802783	T	C	0.00509	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	86118417	T	G	0.00653	ZNHIT6	-	FALSE
chr1	26143698	T	A	0.00832	SEPN1	+	FALSE
chr3	12628920	G	C	0.00036	RAF1	-	FALSE
chr1	15899345	T	C	0.00300	AGMAT	-	TRUE	AluSx3	SINE,Alu
chr1	45976262	A	C	0.00010	MMACHC	+	FALSE
chr1	6651728	C	T	0.00118	KLHL21	-	FALSE
chr1	10093457	C	T	0.00777	UBE4B	+	FALSE
chr1	6282318	T	C	0.00418	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	29519712	T	C	0.00017	MECR	-	TRUE	AluJb	SINE,Alu
chr1	36032230	C	A	0.00297	NCDN	+	FALSE
chr3	42689777	T	G	0.00696	NKTR,LOC101928323	+,-	FALSE	MLT1E3	SINE,Alu
chr9	137330714	A	C	0.00030	RXRA	+	FALSE
chr1	93827764	A	G	0.00056	DR1	+	FALSE
chr1	10520588	T	C	0.00341		.	FALSE	AluSc8	SINE,Alu
chrX	77083981	T	C	0.00647	MAGT1	-	TRUE	AluSz	SINE,Alu
chr5	159520661	T	C	0.00776	PWWP2A	-	FALSE
chr1	47767914	G	A	0.00061	STIL	-	FALSE
chr3	88103602	C	A	0.00284	CGGBP1	-	FALSE
chr1	65900357	G	T	0.00851	LEPR,LEPROT	+	FALSE
chr2	58316814	A	G	0.00257	VRK2	+	FALSE
chr1	220232143	T	C	7.81076E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	36067817	T	C	0.00938	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	900725	T	G	0.00110	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	148753279	G	T	0.00358		.	FALSE
chr1	45279903	C	T	0.00052		.	FALSE	(TCTT)n	SINE,Alu
chr1	9160866	C	A	0.00907		.	FALSE
chr19	57816261	A	G	0.00156		.	FALSE	AluY	SINE,Alu
chr3	183901281	G	A	4.84515E-09	AP2M1	+	FALSE
chr19	11257673	T	C	0.00155	SPC24	-	TRUE	AluSp	SINE,Alu
chr1	45244421	G	A	0.00925		.	FALSE
chr1	10517635	T	C	7.30839E-07		.	FALSE	AluSx1	SINE,Alu
chr1	148009510	G	A	1.20657E-06	NBPF8	-	FALSE
chr1	27204447	T	C	0.00513		.	FALSE	AluSg7	SINE,Alu
chr2	9629955	G	T	0.00866	ADAM17	-	FALSE
chr6	52269046	C	G	0.00338	PAQR8	+	FALSE
chr3	69151152	C	A	0.00750	ARL6IP5	+	FALSE
chr3	81698130	T	C	2.93981E-08	GBE1	-	FALSE
chr1	52381348	T	G	0.00500	RAB3B	-	FALSE
chr4	2940438	T	C	0.00151	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	204520455	T	C	0.00478	MDM4	+	FALSE	AluJb	SINE,Alu
chr2	70452141	C	A	0.00191	TIA1	-	FALSE
chr1	10517306	T	C	0.00102		.	FALSE	AluJr	SINE,Alu
chr4	17804785	T	C	0.00083	DCAF16	-	TRUE	AluSx	SINE,Alu
chr4	76568481	A	T	0.00744	G3BP2	-	FALSE	(TA)n	SINE,Alu
chr5	96350710	G	A	0.00302	LNPEP	+	FALSE
chr3	120046117	G	T	0.00443	LRRC58	-	FALSE	AluYi6	SINE,Alu
chr1	26582091	G	A	0.00172	CEP85	+	FALSE
chr1	53288862	A	G	0.00503	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	53289860	A	G	6.18707E-07	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	1419768	A	G	0.00189	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	11979815	A	C	0.00042	KIAA2013	-	FALSE
chr2	201774185	T	C	6.12175E-05		.	FALSE	AluSz	SINE,Alu
chr1	158057633	C	G	0.00031	KIRREL	+	FALSE
chr1	6473294	A	G	0.00013		.	FALSE	Arthur1C	SINE,Alu
chr1	112170157	C	G	0.00335	RAP1A	+	FALSE	L1ME4a	SINE,Alu
chr5	98128999	G	A	0.00663	RGMB	+	FALSE
chr7	38764395	T	C	0.00139	VPS41	-	TRUE	AluSp	SINE,Alu
chr12	15035081	T	C	0.00951	MGP	-	FALSE
chr19	3121451	C	T	0.00567	GNA11	+	FALSE
chr4	109551183	T	A	0.00270	RPL34	+	FALSE
chr1	114940211	G	T	8.00129E-05	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	36644564	C	T	1.56500E-06	MAP7D1	+	FALSE
chr4	95586727	G	T	0.00996	PDLIM5	+	FALSE
chr2	37331134	T	C	0.00042		.	FALSE	AluSx1	SINE,Alu
chr1	182353198	A	T	0.00473	GLUL	-	FALSE
chr1	26143726	G	T	0.00560	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	1593857	T	C	0.00217	CDK11B,SLC35E2B	-	FALSE
chr5	52389811	T	G	0.00561	ITGA2	+	FALSE
chr1	244572644	G	C	0.00088	ADSS	-	FALSE
chr1	38002251	G	C	0.00624	SNIP1	-	FALSE
chr1	26308882	A	G	3.99595E-05	PAFAH2	-	FALSE
chr1	109535116	G	A	0.00013	WDR47	-	FALSE
chr1	144053567	C	T	0.00353		.	FALSE
chr1	25894466	A	C	0.00783	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr2	101622884	C	A	0.00387	RPL31	+	FALSE
chr2	202032107	A	G	0.00401	CFLAR	+	TRUE	AluJo	SINE,Alu
chr1	1593828	G	C	0.00348	CDK11B,SLC35E2B	-	FALSE
chr1	110276861	T	C	0.00180	GSTM3	-	FALSE	LTR77	SINE,Alu
chr1	35816903	C	T	0.00174	ZMYM4	+	FALSE
chr1	28607959	C	A	0.00230	SESN2	+	FALSE
chr3	149036714	G	A	0.00972	TM4SF18	-	FALSE
chr6	74134008	T	C	0.00337		.	FALSE	AluY	SINE,Alu

RBP	RTF1
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR906WTM
Platform	HiSeq
Pubmed ID	32252787

RTF1 - Target Gene Network