RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	128620435	C	A	0.00602	AMMECR1L	-	FALSE
chr2	61764920	C	A	0.00363	XPO1	-	FALSE
chr5	40835311	A	T	0.00632	RPL37	-	FALSE
chr4	6710356	T	C	0.00046	MRFAP1L1	-	FALSE
chr1	228881129	A	G	0.00199	RHOU	+	FALSE
chr1	28661657	A	G	0.00910	MED18	+	TRUE	AluSg	SINE,Alu
chr22	21304408	A	G	0.00967	CRKL	+	FALSE
chr15	41590943	A	G	0.00561	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	156713558	G	A	8.10199E-06	HDGF	-	FALSE
chr3	14986138	T	C	1.80576E-11	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr17	41144248	T	G	0.00132	RUNDC1	+	FALSE
chr5	145838680	A	G	0.00395	TCERG1	+	FALSE	(GCCCAG)n	SINE,Alu
chr8	30643549	G	C	0.00257	PPP2CB	-	FALSE
chr16	10623525	T	C	8.96209E-06	EMP2	-	TRUE	AluSp	SINE,Alu
chr2	42577806	T	A	0.00276	COX7A2L	-	FALSE
chr14	92585231	T	C	0.00023	NDUFB1	-	TRUE	AluSg	SINE,Alu
chr1	40537924	G	A	0.00404	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	231154918	G	T	0.00022	FAM89A	-	FALSE	(T)n	SINE,Alu
chr2	56611541	G	A	0.00521	CCDC85A	+	FALSE
chr6	25600772	A	G	0.00269	CARMIL1	+	FALSE
chr2	128060040	T	C	0.00494	MAP3K2	-	FALSE	(CA)n	SINE,Alu
chr6	114182271	G	A	0.00011	MARCKS	+	FALSE
chr13	28240417	C	G	6.17934E-05	POLR1D	+	FALSE
chr2	198416727	T	A	0.00378	HSPE1-MOB4,MOB4	+	FALSE
chr1	10517623	T	C	0.00348		.	FALSE	AluSx1	SINE,Alu
chr17	36936846	C	T	0.00277	PIP4K2B	-	FALSE
chr1	36068369	T	C	0.00404	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	50883798	T	C	0.00156	DMRTA2	-	FALSE
chr4	57326875	A	G	1.03861E-05	PAICS	+	TRUE	AluSx1	SINE,Alu
chr3	88101339	T	C	0.00531	CGGBP1	-	FALSE
chr1	146649884	T	A	0.00612	PDIA3P1	+	FALSE
chr2	86249840	T	C	0.00482	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	43391824	A	T	0.00552	SLC2A1	-	FALSE
chr2	158636910	G	A	0.00160	ACVR1	-	FALSE
chr6	42855954	A	G	3.50340E-05	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr5	6633042	C	T	0.00377	NSUN2	-	FALSE
chr1	46093407	C	A	0.00700	GPBP1L1	-	FALSE	A-rich	SINE,Alu
chr17	72206017	T	A	6.66319E-05	RPL38	+	FALSE
chr1	138156	G	T	0.00140	LOC729737	-	FALSE
chr1	145513016	A	G	0.00069	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr19	42375624	A	G	0.00049		.	FALSE	AluSx	SINE,Alu
chr17	4928967	T	G	0.00921	KIF1C	+	FALSE	AluY	SINE,Alu
chr1	9740894	C	T	0.00097	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr16	2821028	G	T	9.74054E-05	SRRM2	+	FALSE
chr1	231557255	C	G	0.00056	EGLN1	-	FALSE	(GCC)n	SINE,Alu
chr1	110136328	T	A	0.00577	GNAI3	+	FALSE
chr4	6925237	C	G	0.00870	TBC1D14	+	FALSE
chr1	32638096	C	T	0.00857	KPNA6	+	FALSE
chr2	37330611	T	C	0.00249		.	FALSE	AluSq2	SINE,Alu
chr4	67846	C	A	0.00573	ZNF718,ZNF595	+	FALSE	AluYk3	SINE,Alu
chr3	44791343	T	C	0.00220	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr2	54896390	G	T	0.00110	SPTBN1	+	FALSE
chr3	42592902	T	C	5.80731E-05	SEC22C	-	FALSE	AluJr	SINE,Alu
chr5	37291508	T	C	0.00430		.	FALSE	AluSx3	SINE,Alu
chr1	6583474	T	C	0.00438	NOL9	-	TRUE	AluSq	SINE,Alu
chr3	99886662	G	A	0.00011	CMSS1	+	FALSE
chr4	17802819	T	C	0.00747	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	183105534	T	C	0.00125	LAMC1	+	FALSE
chr17	7123232	C	G	0.00250	DLG4,ACADVL	+,-	FALSE
chr6	42856007	A	G	0.00212	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	145688973	A	G	7.17653E-05	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	20976211	T	C	0.00833	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr12	64842974	C	A	0.00925		.	FALSE	AluSz	SINE,Alu
chr1	47716046	A	T	0.00696	STIL	-	FALSE
chr3	49397323	T	C	0.00000	RHOA	-	TRUE
chr1	36527402	A	T	0.00278		.	FALSE
chr1	6282400	T	C	0.00118	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	65696034	G	C	0.00803	AK4	+	FALSE
chr1	67896040	G	A	1.31286E-05	SERBP1	-	FALSE
chr5	98109389	T	C	0.00234	RGMB	+	FALSE
chr11	8707394	T	A	4.23595E-06	RPL27A	+	FALSE
chr1	23409538	G	A	0.00464	KDM1A	+	FALSE
chr1	23636273	A	T	0.00442	HNRNPR	-	FALSE
chr1	197125427	T	C	0.00331	ZBTB41	-	FALSE
chr3	183900729	T	C	0.00074	AP2M1	+	FALSE	MIR3	SINE,Alu
chr1	154323560	A	T	0.00013	ATP8B2	+	FALSE
chr1	16929056	C	T	0.00398	NBPF1	-	FALSE
chr1	186321189	A	G	0.00010	TPR	-	FALSE
chr1	61922059	C	A	0.00132	NFIA	+	FALSE	(A)n	SINE,Alu
chr1	19545142	A	G	0.00071	LOC101927895,EMC1	+,-	FALSE
chr1	20977599	C	G	0.00489	PINK1,PINK1-AS	+,-	FALSE
chr3	122447574	A	C	0.00224	PARP14	+	FALSE
chr3	160968914	T	C	0.00305	NMD3	+	FALSE
chr6	27860480	G	A	0.00908	HIST1H2AM	-	FALSE
chr1	6659505	G	A	0.00405	KLHL21	-	FALSE
chr1	116238478	C	T	0.00834	VANGL1	+	FALSE
chr5	122165482	C	T	0.00367	SNX2	+	FALSE	(AC)n	SINE,Alu
chr20	25427823	A	G	0.00054	GINS1	+	TRUE	AluSz	SINE,Alu
chr3	197612370	A	G	0.00157		.	FALSE	AluSp	SINE,Alu
chr2	55516902	G	A	0.00011	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr5	149363414	A	G	0.00503	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr1	33148096	A	G	0.00404	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr2	9629305	A	T	0.00591	ADAM17	-	FALSE
chr1	150937963	A	G	0.00658	CERS2	-	FALSE	G-rich	SINE,Alu
chr4	128995640	G	A	0.00567	LARP1B	+	FALSE
chr2	85776590	T	C	0.00950	GGCX	-	TRUE	AluSz6	SINE,Alu
chr21	34728113	A	G	0.00531	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr1	23381596	T	C	0.00762	KDM1A	+	FALSE
chr5	34906547	T	C	0.00051	RAD1	-	TRUE	AluJo	SINE,Alu
chr1	20976078	T	C	0.00344	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	1647814	T	C	7.10450E-06	CDK11B,CDK11A	-	FALSE
chr1	566933	A	G	3.50078E-05		.	FALSE
chr7	107789927	T	C	0.00111	NRCAM	-	FALSE
chr8	145150065	G	C	0.00585	CYC1	+	FALSE
chr1	151955393	T	C	7.77942E-05	S100A10	-	FALSE
chr3	105295461	G	A	9.74520E-12	ALCAM	+	FALSE
chr1	11159823	T	C	0.00186	EXOSC10,LOC105376736	+,-	FALSE
chr1	33086754	T	C	0.00065		.	FALSE	AluY	SINE,Alu
chr4	39551167	T	C	0.00361	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	144614842	C	G	0.00015	NBPF20	+	FALSE
chr1	43748051	A	G	0.00489	C1orf210	-	FALSE	L2c	SINE,Alu
chr1	16889642	T	C	0.00480	NBPF1	-	TRUE
chr1	52824084	G	A	0.00207	CC2D1B	-	FALSE
chr1	85786957	T	G	0.00959	DDAH1	-	FALSE
chr1	74672474	G	A	0.00150	FPGT-TNNI3K,FPGT	+	FALSE	X12_DNA	SINE,Alu
chr1	9642827	G	A	0.00985	SLC25A33	+	FALSE
chr1	16958064	A	G	2.44983E-05		.	FALSE
chr1	16889864	C	A	0.00020	NBPF1	-	FALSE
chr1	10042988	A	G	3.32241E-06	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr1	19542456	T	C	0.00323	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	110564996	C	T	0.00926	AHCYL1	+	FALSE
chr1	16891365	G	A	1.42078E-05	NBPF1	-	FALSE
chr1	120572572	C	T	0.00497	NOTCH2	-	FALSE
chr1	179044212	A	G	7.62870E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr16	75479910	T	C	0.00026	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr1	1252441	T	C	0.00086	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr3	47125385	G	A	0.00496	SETD2	-	FALSE
chr5	126171974	C	T	0.00867	LMNB1	+	FALSE
chr3	10065426	C	T	0.00776	CIDECP	-	FALSE
chr4	100869246	T	C	0.00444	H2AFZ	-	FALSE
chr12	7045885	A	C	0.00473	ATN1	+	FALSE	(CAG)n	SINE,Alu
chr2	98090925	T	C	0.00056	LOC100506076	-	FALSE	L1PREC2	SINE,Alu
chr2	113334241	A	G	0.00388	POLR1B	+	TRUE
chr1	28835934	A	G	0.00596	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr11	69480680	T	C	0.00252	ORAOV1	-	FALSE	AluSx1	SINE,Alu
chr1	24134721	T	C	0.00448	HMGCL	-	FALSE
chr1	45976723	T	C	0.00733	MMACHC,PRDX1	+,-	FALSE
chr4	17802824	T	C	0.00594	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	94351063	A	T	0.00907	GCLM	-	FALSE
chr1	1469546	G	A	0.00766	ATAD3A	+	FALSE
chr2	176792488	G	T	0.00195	LNPK	-	FALSE
chr1	46774783	A	G	1.06423E-10	UQCRH	+	FALSE	(AGG)n	SINE,Alu
chr7	22983600	T	C	0.00025	FAM126A	-	FALSE
chr1	181026558	G	A	0.00217	MR1	+	FALSE
chr1	36067677	T	C	0.00048	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	179326315	A	G	0.00187	SOAT1	+	TRUE
chr5	147793406	A	G	0.00323	FBXO38	+	FALSE
chr1	197475873	G	A	0.00844	DENND1B	-	FALSE
chr1	1469782	G	C	0.00544	ATAD3A	+	FALSE
chr2	61416406	T	G	0.00010	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	6283260	T	C	0.00125	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	19543457	T	C	0.00718	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr8	11172477	C	T	0.00805	MTMR9	+	FALSE
chr1	109747437	A	G	0.00104	KIAA1324	+	TRUE	AluJr4	SINE,Alu
chr2	36704033	T	A	0.00012	CRIM1	+	FALSE
chr3	39137794	T	C	0.00240	WDR48	+	FALSE
chr14	102547384	A	T	0.00403	HSP90AA1	-	FALSE
chr19	36033460	C	T	0.00622	GAPDHS,TMEM147-AS1	+,-	FALSE
chr1	204521239	A	G	0.00095	MDM4	+	TRUE	AluSp	SINE,Alu
chr1	120163520	T	C	0.00017	ZNF697	-	FALSE
chr5	175802154	C	T	0.00883		.	FALSE	(CATC)n	SINE,Alu
chr4	95586224	A	G	0.00053	PDLIM5	+	FALSE
chr4	123859284	C	T	0.00034	SPATA5	+	FALSE
chr5	37288767	T	C	0.00928		.	FALSE	FLAM_C	SINE,Alu
chr1	225683182	C	T	0.00056	ENAH	-	FALSE
chr1	200375846	G	T	0.00040	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	148004422	T	A	0.00017	NBPF8	-	FALSE
chr4	153898736	A	G	0.00574	FHDC1	+	FALSE	AluJb	SINE,Alu
chr1	212277581	C	T	4.20326E-05	DTL	+	FALSE
chr12	98943033	A	G	0.00346	TMPO	+	TRUE	AluSz	SINE,Alu
chr5	126113463	A	C	0.00392	LMNB1	+	FALSE	(CGACGCG)n	SINE,Alu
chr22	42908563	C	T	0.00492	SERHL,RRP7A	+,-	FALSE
chr3	9821914	C	T	7.78954E-06	TADA3	-	FALSE
chr1	17394775	G	A	0.00103	PADI2	-	FALSE
chr1	173834149	A	C	0.00265	GAS5	-	FALSE	AluSz	SINE,Alu
chr15	63988357	C	G	0.00539	HERC1	-	FALSE
chr2	3592602	T	C	0.00076	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	9642828	T	A	0.00148	SLC25A33	+	FALSE
chr16	10623688	T	C	0.00766	EMP2	-	TRUE	AluSp	SINE,Alu
chr5	145493224	A	T	0.00251	LARS	-	FALSE
chr2	61278017	A	G	8.96590E-05	PEX13	+	TRUE	AluY	SINE,Alu
chr1	47074462	A	G	0.00011	MOB3C	-	FALSE
chr13	45911310	A	T	0.00685	TPT1	-	FALSE
chr2	1168781	C	A	0.00650	SNTG2	+	FALSE
chr14	75202412	A	G	5.03546E-10	FCF1	+	TRUE	AluSc	SINE,Alu
chr2	70677439	A	G	0.00498	TGFA	-	FALSE
chr1	54493197	T	C	0.00064	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr2	196600548	G	T	0.00036	SLC39A10	+	FALSE
chr1	1650832	A	G	0.00407	CDK11B,CDK11A	-	FALSE
chr1	22854702	C	T	5.42952E-11	ZBTB40	+	FALSE
chrM	10307	A	C	0.00588		.	FALSE
chr1	44423703	C	T	1.17684E-14	IPO13	+	FALSE
chr12	98942885	A	G	1.31269E-05	TMPO	+	TRUE	AluSc	SINE,Alu
chr8	27661035	T	A	0.00314	ESCO2	+	FALSE	A-rich	SINE,Alu
chr12	98942644	A	G	0.00133	TMPO	+	TRUE	AluSc	SINE,Alu
chr2	224622242	T	C	0.00873	AP1S3	-	TRUE	AluSx1	SINE,Alu
chr1	205686522	G	T	0.00427	NUCKS1	-	FALSE
chr2	46414708	G	A	0.00155	PRKCE	+	FALSE
chr1	16889217	G	C	0.00696	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr6	11577085	C	T	1.34362E-05	TMEM170B	+	FALSE
chr3	45153708	G	A	4.36430E-08	CDCP1	-	FALSE
chr1	24746451	A	G	0.00683	NIPAL3	+	TRUE	AluSc	SINE,Alu
chr1	168218735	A	G	0.00924		.	FALSE	AluSz	SINE,Alu
chr1	1252723	T	C	7.44553E-05	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	59122910	G	A	0.00251	MYSM1	-	FALSE
chr10	99504630	G	T	0.00544	ZFYVE27	+	FALSE
chr3	183899832	C	T	1.28780E-06	AP2M1	+	FALSE
chr1	235715523	A	G	0.00660	GNG4	-	FALSE
chr2	217366901	A	G	0.00143		.	FALSE	AluSz6	SINE,Alu
chr5	93018883	A	T	0.00181	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr1	36067886	T	C	1.98907E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	28662213	A	G	0.00013	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	54692334	T	C	0.00021	SSBP3	-	FALSE	(T)n	SINE,Alu
chr2	101587455	C	T	0.00178	NPAS2	+	FALSE
chr1	10517659	T	C	0.00012		.	FALSE	AluSx1	SINE,Alu
chr1	190234133	A	C	5.13910E-06	BRINP3	-	FALSE
chr1	67874859	T	C	0.00214	SERBP1	-	TRUE	AluSx	SINE,Alu
chr10	75010139	T	C	0.00323	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	16902943	T	C	0.00833	NBPF1	-	FALSE
chr1	36067925	T	C	0.00103	PSMB2	-	TRUE	AluSz	SINE,Alu
chr6	109001948	G	A	0.00030	FOXO3	+	FALSE	(A)n	SINE,Alu
chr1	33148214	A	G	0.00295	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	162354203	A	G	0.00956	C1orf226	+	FALSE
chr1	3545192	C	G	0.00600	TPRG1L	+	FALSE
chr3	9935263	A	G	1.04104E-09	JAGN1	+	FALSE
chr1	10003320	G	A	0.00168	LZIC,NMNAT1	+,-	FALSE
chr12	7074517	C	T	0.00369	PHB2	-	FALSE
chr1	110604747	G	A	0.00739	ALX3	-	FALSE
chr1	15909744	C	T	0.00100	AGMAT	-	FALSE
chr1	46782446	A	G	0.00145	UQCRH	+	FALSE
chr1	33148736	A	G	2.35913E-09	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr2	202242616	G	A	0.00880	TRAK2	-	FALSE
chr5	96429362	A	T	0.00907	LIX1	-	FALSE
chr2	152976703	T	A	0.00126	STAM2	-	FALSE
chr1	45975345	A	G	0.00227	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	11347142	C	G	0.00789	UBIAD1	+	FALSE
chr12	69237042	A	G	0.00413	MDM2	+	TRUE
chr19	19792444	A	G	0.00686	ZNF101	+	TRUE	AluJb	SINE,Alu
chr1	28662199	A	G	0.00011	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	46828700	A	G	0.00805	NSUN4	+	FALSE
chr1	78029102	G	A	0.00086	ZZZ3	-	FALSE
chr1	569782	T	C	0.00010		.	FALSE
chr17	38974612	T	C	0.00963	KRT10	-	FALSE
chr17	42877584	T	C	0.00489	GJC1	-	TRUE	AluSg	SINE,Alu
chr17	7485341	C	A	0.00701	CD68,LOC100996842	+,-	FALSE
chr1	24710405	A	G	0.00246	STPG1	-	FALSE
chr2	37331753	T	C	0.00026		.	FALSE	AluJb	SINE,Alu
chr1	3730400	T	C	0.00018	CEP104	-	TRUE	AluSx3	SINE,Alu
chr12	69237077	A	G	0.00445	MDM2	+	TRUE	(GA)n	SINE,Alu
chr2	129024188	T	G	0.00051	HS6ST1	-	FALSE
chr7	29963082	G	A	0.00118	SCRN1	-	FALSE
chr3	196077460	G	T	0.00416		.	FALSE
chr5	55235866	T	A	0.00073	IL6ST	-	FALSE
chr5	9546451	G	A	0.00030	SNHG18	+	FALSE

RBP	RBM22
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR947OIM
Platform	HiSeq
Pubmed ID	32252787

RBM22 - Target Gene Network