RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	27203728	A	T	0.00528		.	FALSE
chr1	163116048	G	T	3.38683E-05	RGS5	-	FALSE
chr2	219100202	C	T	0.00027	ARPC2	+	FALSE	AluJr	SINE,Alu
chr3	98518158	A	T	0.00960	DCBLD2	-	FALSE
chr1	16577794	C	T	0.00805	FBXO42	-	FALSE
chr4	165998694	T	C	0.00041	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	1653093	A	G	0.00642	CDK11B,CDK11A	-	FALSE	L2	SINE,Alu
chr2	202901910	G	A	0.00963	FZD7	+	FALSE
chr3	47628810	T	A	0.00934	SMARCC1	-	FALSE
chr1	16893763	T	C	0.00159	NBPF1	-	FALSE
chr4	13606576	A	T	0.00737	BOD1L1	-	FALSE
chr17	8378694	A	C	0.00735	MYH10	-	FALSE
chr1	16945227	G	T	0.00090	CROCCP2	-	FALSE
chr1	150937960	G	C	0.00014	CERS2	-	FALSE	G-rich	SINE,Alu
chr8	101932094	T	A	0.00288	YWHAZ	-	FALSE	MER34B-int	SINE,Alu
chr2	178186556	G	A	0.00917	LOC100130691	-	FALSE
chr1	148251009	T	C	0.00065	NBPF8,NBPF14,NBPF9	-	TRUE
chr1	19199221	C	T	0.00392	ALDH4A1	-	FALSE
chr17	65334867	T	C	1.03096E-06	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	201846632	C	T	7.46598E-05	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	36068231	T	C	9.19439E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr6	44222157	G	A	0.00856	SLC35B2	-	FALSE
chr1	220323448	C	T	0.00223	RAB3GAP2	-	FALSE
chr1	114940216	T	G	0.00148	TRIM33	-	FALSE	(T)n	SINE,Alu
chr15	91044383	G	T	0.00440	IQGAP1	+	FALSE
chr10	28971536	A	T	0.00815	BAMBI	+	FALSE
chr1	165877575	A	C	0.00839	UCK2	+	FALSE
chr1	31732601	A	T	0.00175	SNRNP40	-	FALSE
chr1	168218543	A	G	7.78857E-07		.	FALSE	AluSz	SINE,Alu
chr5	125961487	A	G	0.00776	PHAX	+	FALSE	AluSz6	SINE,Alu
chr1	23408016	C	A	4.80633E-05	KDM1A	+	FALSE
chr5	43290210	A	G	0.00565	HMGCS1	-	FALSE	A-rich	SINE,Alu
chr3	40353791	A	T	0.00419	EIF1B	+	FALSE
chr2	86251114	T	C	0.00709		.	FALSE	AluSx	SINE,Alu
chr3	156258319	T	C	0.00012	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	54692334	T	C	5.22151E-05	SSBP3	-	FALSE	(T)n	SINE,Alu
chr5	41917695	C	T	0.00546	C5orf51	+	FALSE
chr2	37328097	T	C	0.00301		.	FALSE
chr1	1595604	A	T	0.00233	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr4	57326156	A	G	0.00230	PAICS	+	TRUE	AluJr	SINE,Alu
chr8	145159712	A	G	0.00402	MAF1	+	FALSE
chr1	3545183	A	T	0.00347	TPRG1L	+	FALSE
chr1	20976163	C	T	0.00091	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	54355105	A	G	0.00325	YIPF1	-	FALSE	MIRb	SINE,Alu
chr1	11783009	A	G	7.55078E-05		.	FALSE	AluSx	SINE,Alu
chr1	75196073	C	T	0.00159	CRYZ	-	FALSE
chr1	32799438	A	T	0.00485	MARCKSL1	-	FALSE
chr2	203426264	C	T	0.00948	BMPR2	+	FALSE
chr21	44836048	G	A	0.00542	LOC102724428,SIK1	-	FALSE
chr1	28607959	C	A	0.00215	SESN2	+	FALSE
chr1	9642827	G	A	0.00521	SLC25A33	+	FALSE
chr1	23240263	G	A	5.22984E-05	EPHB2	+	FALSE
chr2	55776561	T	A	0.00092	PPP4R3B	-	FALSE
chr1	100490275	A	G	0.00142	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr1	9161203	T	C	3.69156E-05		.	FALSE	AluSx	SINE,Alu
chr1	148595665	A	G	0.00141	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr1	40214296	A	G	0.00485	PPIE	+	TRUE	AluSq2	SINE,Alu
chr1	120163247	T	C	0.00365	ZNF697	-	FALSE
chr1	155142927	A	G	0.00877	KRTCAP2	-	FALSE
chr2	74333231	C	T	0.00073	TET3	+	FALSE
chr6	26411987	T	C	0.00405	BTN3A1	+	FALSE
chr5	43298557	C	T	0.00643	HMGCS1	-	FALSE
chr1	10517689	T	C	0.00504		.	FALSE	AluSx1	SINE,Alu
chr1	179829093	T	C	0.00056	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	246829616	T	C	0.00139	CNST	+	FALSE
chr2	234775941	A	G	0.00161	MSL3P1	-	FALSE
chr3	10193796	A	G	2.82806E-06	VHL	+	TRUE	AluSx	SINE,Alu
chr1	46830430	G	A	0.00023	NSUN4	+	FALSE	LTR108a_Mam	SINE,Alu
chr1	11347164	A	C	0.00667	UBIAD1	+	FALSE
chr1	230979207	C	A	0.00643	C1orf198	-	FALSE
chr2	85824712	C	A	0.00663	RNF181	+	FALSE
chr1	91486839	T	C	0.00329	ZNF644	-	FALSE
chr1	320211	A	G	6.69717E-05		.	FALSE	AluJo	SINE,Alu
chr1	19542310	T	C	0.00112	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr4	25749196	T	A	0.00870	SEL1L3	-	FALSE
chr1	10517672	T	C	0.00090		.	FALSE	AluSx1	SINE,Alu
chrX	131339006	T	A	0.00405	RAP2C	-	FALSE
chr15	90819423	A	G	3.09408E-05		.	FALSE	AluSx	SINE,Alu
chr2	37328100	T	C	0.00027		.	FALSE
chr2	37429737	A	G	0.00439	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	3548832	G	C	0.00464	WRAP73	-	FALSE
chr1	109812555	A	C	3.87556E-05	CELSR2	+	FALSE
chr1	24861704	G	A	0.00345	RCAN3	+	FALSE
chr6	31132911	C	T	0.00000		.	FALSE
chr2	204301752	G	C	0.00029	RAPH1	-	FALSE
chr1	9165685	G	A	7.66901E-05	GPR157	-	FALSE
chr2	47129284	A	G	0.00327	MCFD2	-	FALSE
chr5	177019196	G	C	0.00509	TMED9	+	FALSE	(GCG)n	SINE,Alu
chr4	57326236	A	G	0.00699	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	45975345	A	G	0.00071	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr5	31553951	C	T	0.00240	C5orf22	+	FALSE
chr8	124262075	G	T	7.79989E-05	ZHX1-C8orf76,ZHX1	-	FALSE
chr5	118175329	T	C	2.47285E-05	DTWD2	-	TRUE	AluJr	SINE,Alu
chr7	128143945	A	G	0.00607		.	FALSE	AluSq2	SINE,Alu
chr1	201975173	G	T	0.00053	RNPEP	+	FALSE
chr2	70316299	C	A	0.00650	PCBP1	+	FALSE
chr12	123253789	A	G	0.00037	DENR	+	TRUE	(AT)n	SINE,Alu
chr1	70718280	A	C	0.00946		.	FALSE
chr4	160279820	C	T	0.00354	RAPGEF2	+	FALSE
chr2	231032372	A	G	0.00691		.	FALSE	MLT1H	SINE,Alu
chr1	147124310	T	G	0.00968	ACP6	-	FALSE
chr1	205112911	T	C	0.00161	DSTYK	-	FALSE
chr5	175816759	T	A	0.00018		.	FALSE
chr3	49506286	G	T	0.00052	DAG1	+	FALSE	AluJb	SINE,Alu
chr6	31322980	C	T	0.00091		.	FALSE
chr6	3021492	A	G	0.00613	HTATSF1P2	-	FALSE	Tigger3a	SINE,Alu
chr1	220231276	T	C	0.00545	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr9	128127412	A	G	0.00751		.	FALSE
chr1	183595345	A	T	0.00383	ARPC5	-	FALSE
chr1	25894464	G	A	0.00527	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr4	84525986	G	T	0.00081	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr1	36770045	T	C	0.00488	THRAP3	+	FALSE
chr1	138156	G	T	0.00413	LOC729737	-	FALSE
chr20	25427756	A	G	0.00396	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	155032752	A	G	0.00347	LOC100505666,ADAM15	+,-	FALSE
chr1	40537943	A	C	0.00115	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	196197477	A	C	0.00174	RNF168	-	FALSE
chr1	200375835	G	T	0.00063	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	36067817	T	C	0.00938	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	225683161	T	G	0.00168	ENAH	-	FALSE	(T)n	SINE,Alu
chr1	36068052	G	T	1.43241E-12	PSMB2	-	FALSE	L1ME4b	SINE,Alu
chr1	145512078	A	G	0.00099	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr4	84525974	T	C	0.00255	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr3	49067809	T	A	0.00022	QRICH1	-	FALSE
chr1	32385071	T	A	0.00436	PTP4A2	-	FALSE
chr1	78414308	T	C	0.00024	FUBP1	-	FALSE
chr1	16893691	C	A	0.00764	NBPF1	-	FALSE
chr16	10623639	T	C	0.00392	EMP2	-	TRUE	AluSp	SINE,Alu
chr2	120021785	T	C	0.00751	STEAP3	+	FALSE
chr4	165998078	T	C	0.00567	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	28825466	A	G	0.00701	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr3	57549504	A	G	0.00384	PDE12	+	TRUE	AluJb	SINE,Alu
chr3	124732406	C	A	0.00975	HEG1	-	FALSE
chr1	900505	G	C	0.00583	KLHL17	+	FALSE
chr4	169910101	C	T	0.00026	CBR4	-	FALSE
chr1	36068325	T	C	3.42972E-06	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	95658346	T	A	0.00098	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr2	191745653	T	G	0.00030	GLS	+	FALSE
chr19	51305796	T	C	0.00212	C19orf48	-	TRUE	AluSg	SINE,Alu
chr3	71005566	C	T	0.00209	FOXP1	-	FALSE	(T)n	SINE,Alu
chr1	160966351	T	C	0.00023	F11R	-	TRUE	AluSg	SINE,Alu
chr4	56294628	T	C	0.00234	CLOCK	-	FALSE
chr4	5830393	C	T	0.00220	CRMP1	-	FALSE
chr1	56961756	A	G	0.00263	PLPP3	-	FALSE
chr14	23795219	C	T	0.00201	BCL2L2-PABPN1,PABPN1	+	FALSE
chr5	90074268	G	A	0.00240	ADGRV1	+	FALSE
chr1	167759281	T	C	0.00923	MPZL1	+	FALSE
chr1	205501469	A	G	0.00113	CDK18	+	FALSE
chr1	204521580	A	G	0.00169	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	10520532	T	C	0.00013		.	FALSE	AluSx1	SINE,Alu
chr1	38326661	T	C	0.00023	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	158067059	A	C	0.00655	KIRREL	+	FALSE
chr1	16932783	G	C	0.00843	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	46077345	A	G	0.00024	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	179829200	T	C	0.00497	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr8	41399912	C	A	0.00056	LOC102723729,GINS4	+,-	FALSE	AluSx3	SINE,Alu
chr4	38016395	T	G	0.00537	TBC1D1	+	FALSE
chr1	1164179	G	A	0.00983	SDF4	-	FALSE	G-rich	SINE,Alu
chr22	18571431	A	G	0.00158	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	94353045	G	T	0.00351	GCLM	-	FALSE	AluSg	SINE,Alu
chr19	58375707	A	G	0.00156	ZNF587	+	TRUE	AluSg	SINE,Alu
chr15	91044387	T	G	0.00077	IQGAP1	+	FALSE
chr1	9328213	A	G	5.00055E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	28661657	A	G	0.00910	MED18	+	TRUE	AluSg	SINE,Alu
chr1	31732603	A	C	0.00148	SNRNP40	-	FALSE
chr17	41144609	G	A	0.00821	RUNDC1	+	FALSE
chr8	144940794	G	C	0.00038	EPPK1	-	FALSE
chr3	32567573	G	A	0.00320	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr2	203741654	T	C	0.00611		.	FALSE	AluJr	SINE,Alu
chr6	160100882	T	C	3.93365E-05	SOD2	-	TRUE	AluSz	SINE,Alu
chr3	120115286	T	G	0.00077	FSTL1	-	FALSE
chr3	156259229	T	C	1.62025E-06	SSR3	-	TRUE	AluSq2	SINE,Alu
chr2	9629953	C	A	0.00105	ADAM17	-	FALSE
chr4	5743512	T	C	0.00210	EVC	+	FALSE
chr1	193054154	G	A	0.00757	TROVE2	+	FALSE
chr2	201774342	T	C	0.00127		.	FALSE	AluSz	SINE,Alu
chr19	18477761	A	G	0.00461	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr3	191111160	A	G	4.43846E-07	CCDC50	+	FALSE
chr1	36067752	T	C	0.00031	PSMB2	-	TRUE	AluSz	SINE,Alu
chr9	124103030	G	A	0.00193	STOM	-	FALSE	AluSq2	SINE,Alu
chr4	48854139	T	C	0.00133	OCIAD1	+	FALSE	L2c	SINE,Alu
chr1	46078630	A	G	0.00131	NASP	+	FALSE
chr1	36067886	T	C	0.00786	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	70504926	A	G	0.00671	PCYOX1	+	FALSE	MER5A	SINE,Alu
chr4	2940364	T	C	0.00718	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	6694574	G	A	0.00983	THAP3,DNAJC11	+,-	FALSE
chr1	1234671	G	A	0.00100	ACAP3	-	FALSE
chr1	28836975	A	G	0.00782	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr3	12940374	T	G	0.00505	IQSEC1	-	FALSE
chr21	40567665	G	A	0.00786	BRWD1	-	FALSE
chr1	38275432	G	T	0.00057	MTF1	-	FALSE
chr1	14150032	C	T	0.00163	PRDM2	+	FALSE
chr12	125512507	A	G	0.00276		.	FALSE	AluY	SINE,Alu
chr1	36068369	T	C	0.00404	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	113212976	C	T	0.00904	CAPZA1	+	FALSE
chr1	145100772	A	G	0.00945	NBPF20,SEC22B	+	TRUE	AluSg4	SINE,Alu
chr1	12401868	A	C	0.00526	VPS13D	+	FALSE
chr7	17384440	A	G	0.00271	AHR	+	TRUE	AluSx	SINE,Alu
chr9	21863621	C	A	0.00123	MTAP	+	FALSE	AluY	SINE,Alu
chr1	204521239	A	G	0.00095	MDM4	+	TRUE	AluSp	SINE,Alu
chr2	26613948	A	G	0.00218	EPT1	+	FALSE
chr3	47386062	T	A	4.63678E-05	KLHL18	+	FALSE
chr1	949608	G	A	0.00435	ISG15	+	FALSE
chr3	44790781	T	C	0.00887	KIAA1143	-	TRUE	AluY	SINE,Alu
chr10	101992793	T	C	0.00407	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr2	202252539	G	A	0.00293	TRAK2	-	FALSE
chr7	48146025	A	G	0.00106	UPP1	+	TRUE	AluSq	SINE,Alu
chr1	16893813	A	G	7.34801E-05	NBPF1	-	FALSE
chr1	144918957	T	A	0.00484	NBPF20,PDE4DIP	+,-	FALSE
chr2	39009425	A	G	0.00607		.	FALSE	AluSx3	SINE,Alu
chr3	98299365	T	G	0.00133	CPOX	-	FALSE
chr1	1152309	A	T	0.00035	SDF4	-	FALSE
chr3	16357708	A	G	0.00098	RFTN1	-	FALSE
chr1	19585493	A	G	3.52757E-05	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr3	93846831	G	A	0.00547		.	FALSE	AluSq2	SINE,Alu
chr1	45975574	A	G	0.00613	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	142619386	G	A	0.00637		.	FALSE
chr2	202028727	A	G	0.00833	CFLAR	+	TRUE	AluSx1	SINE,Alu
chr2	9558812	G	T	0.00427	ITGB1BP1	-	FALSE
chr1	900723	T	G	0.00051	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	19953120	G	A	0.00025	MINOS1,MINOS1-NBL1	+	FALSE
chr17	45761101	G	T	0.00296		.	FALSE
chr1	155695960	A	G	1.11424E-05	DAP3	+	TRUE	AluSp	SINE,Alu
chr3	196078364	G	A	0.00290		.	FALSE	GA-rich	SINE,Alu
chr1	144053567	C	T	0.00353		.	FALSE
chr4	57326291	A	G	0.00549	PAICS	+	TRUE	AluJr	SINE,Alu
chr14	31916792	C	T	3.89824E-05	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr2	96850885	T	C	0.00699	STARD7	-	FALSE
chr1	121133733	G	A	0.00455	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	109818270	C	T	0.00996	CELSR2	+	FALSE
chr1	157963370	C	G	0.00445	KIRREL	+	FALSE
chr11	490771	C	T	0.00600	PTDSS2	+	FALSE
chr5	72801321	T	A	0.00427	BTF3	+	FALSE
chr1	1650797	A	G	3.70820E-05	CDK11B,CDK11A	-	FALSE
chr6	72012435	A	G	0.00723	OGFRL1	+	FALSE	AluSg	SINE,Alu
chr7	156764350	G	C	0.00415	NOM1	+	FALSE
chr1	36067677	T	C	1.65353E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	234561498	T	C	2.33971E-05	TARBP1	-	FALSE
chr1	26449336	A	G	0.00343	PDIK1L	+	FALSE
chrX	123045103	A	G	0.00996	XIAP	+	TRUE	AluSp	SINE,Alu
chr14	50361170	C	T	0.00096	ARF6	+	FALSE	(T)n	SINE,Alu
chr1	40537940	A	C	0.00155	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	194998813	A	G	0.00572	ACAP2	-	FALSE	AluSx1	SINE,Alu
chr2	64863970	C	T	9.52027E-09	SERTAD2	-	FALSE
chr6	33384325	G	T	0.00456		.	FALSE
chr1	154554940	G	C	0.00032	ADAR	-	FALSE
chr11	93474585	T	G	0.00531	TAF1D	-	FALSE
chr2	37328097	T	C	3.71887E-07		.	FALSE
chr3	194362721	G	A	5.25740E-07	LSG1	-	FALSE
chr10	101992783	T	C	0.00313	CWF19L1	-	TRUE	AluJb	SINE,Alu

RBP	DDX6
Knock-Method	shRNA
RBP Family	DEAD
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR147ZBD
Platform	HiSeq
Pubmed ID	32252787

DDX6 - Target Gene Network