RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr4	155457049	T	A	0.00434	PLRG1	-	FALSE	L2d2	SINE,Alu
chr3	48787118	T	C	0.00248	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	144595935	G	A	0.00061	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	19542679	T	C	0.00575	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr3	122283289	C	A	0.00072	DTX3L,PARP9	+,-	FALSE
chr1	45975574	A	G	0.00890	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	28150601	A	T	0.00558	STX12	+	FALSE
chr2	128603119	T	C	0.00340		.	FALSE	AluSp	SINE,Alu
chr1	16945409	T	A	0.00290	CROCCP2	-	FALSE
chr1	1647814	T	C	8.49337E-05	CDK11B,CDK11A	-	FALSE
chr1	1663957	C	T	0.00345	SLC35E2	-	FALSE
chr1	205683408	C	T	0.00082	NUCKS1	-	FALSE
chr1	23834008	A	C	0.00374	E2F2	-	FALSE	AluSz	SINE,Alu
chr1	206516261	C	T	0.00020	SRGAP2	+	FALSE
chr1	67874697	T	C	0.00163	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr3	53265766	C	T	0.00088	TKT	-	FALSE
chr2	86251151	T	C	0.00882		.	FALSE	AluSx	SINE,Alu
chr1	6282420	T	C	0.00779	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	10143199	A	G	0.00496	FANCD2,FANCD2OS	+,-	FALSE	AluSc8	SINE,Alu
chr2	202152108	A	G	0.00018	CASP8	+	FALSE	AluJb	SINE,Alu
chr5	14769103	G	A	0.00104	ANKH	-	FALSE
chr1	26799971	T	A	0.00713	HMGN2	+	FALSE
chr1	197070442	G	T	0.00468	ASPM	-	FALSE
chr10	47221465	T	C	0.00201		.	FALSE	AluJb	SINE,Alu
chr4	57326875	A	G	1.03861E-05	PAICS	+	TRUE	AluSx1	SINE,Alu
chr7	2290522	C	T	0.00517	NUDT1	+	FALSE
chr1	29519712	T	C	0.00017	MECR	-	TRUE	AluJb	SINE,Alu
chr1	121133779	C	G	0.00567	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr2	74442407	A	G	0.00384	MTHFD2	+	FALSE
chr12	44181367	G	A	0.00608	IRAK4	+	FALSE	MLT1E1A	SINE,Alu
chr1	160967848	T	C	0.00200	F11R	-	TRUE	AluSp	SINE,Alu
chr5	442075	C	A	0.00962	EXOC3-AS1	-	FALSE
chr2	128949342	A	G	0.00397	UGGT1	+	TRUE	AluSg	SINE,Alu
chr20	3848225	A	G	0.00075	MAVS	+	TRUE	AluJr	SINE,Alu
chr3	44790773	T	C	0.00122	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	10517688	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr1	46032311	A	G	0.00340	AKR1A1	+	FALSE
chr4	42022464	C	A	0.00059	SLC30A9	+	FALSE
chr5	41917694	T	C	0.00784	C5orf51	+	FALSE
chr1	204521590	A	G	1.33621E-05	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	145688983	A	G	0.00101	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr19	11560438	A	G	7.61449E-05	PRKCSH	+	FALSE	AluSx	SINE,Alu
chr5	56177850	A	T	0.00856	MAP3K1	+	FALSE	(CAA)n	SINE,Alu
chr1	53365235	G	C	0.00029	ECHDC2	-	FALSE
chr14	50792933	C	T	0.00156	ATP5S	+	FALSE	AluSx	SINE,Alu
chr1	22200473	C	T	0.00039	HSPG2	-	FALSE
chr1	40759231	A	G	0.00168	ZMPSTE24	+	FALSE
chr1	10042911	A	G	0.00043	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr16	427820	C	T	0.00240	TMEM8A	-	FALSE
chr1	10520767	T	C	4.75457E-05	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	120612037	T	G	0.00044	NOTCH2	-	FALSE	(CGC)n	SINE,Alu
chr2	101638888	A	G	0.00127	TBC1D8	-	FALSE
chr1	20982631	G	A	0.00133	DDOST	-	FALSE
chr2	37330517	T	C	0.00324		.	FALSE	AluSq2	SINE,Alu
chr6	72012435	A	G	0.00723	OGFRL1	+	FALSE	AluSg	SINE,Alu
chr1	44463185	T	G	0.00469	SLC6A9	-	FALSE
chr15	42550445	T	C	0.00360	TMEM87A	-	FALSE
chr5	37289051	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr17	58024275	A	G	0.00455	RPS6KB1	+	FALSE
chr1	1661751	A	G	0.00037	SLC35E2	-	FALSE
chr1	19543457	T	C	0.00059	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	17299387	T	A	0.00941	CROCC	+	FALSE
chr12	98943214	A	G	4.64520E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chrX	123046779	A	G	0.00629	XIAP	+	TRUE	AluSz	SINE,Alu
chr1	14106402	A	T	0.00914	PRDM2	+	FALSE
chr1	6283264	T	C	0.00073	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	94352570	G	T	0.00402	GCLM	-	FALSE	AluSx1	SINE,Alu
chr1	35817023	G	C	0.00547	ZMYM4	+	FALSE
chr12	133298069	A	G	6.69127E-09	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	3416449	C	A	0.00748	MEGF6	-	FALSE
chr2	44459528	G	A	0.00100	PPM1B	+	FALSE
chr6	38140505	A	G	0.00109	BTBD9	-	FALSE
chr3	122291688	A	G	0.00597	DTX3L	+	FALSE	AluSz	SINE,Alu
chr1	36068364	T	C	9.25575E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	234386134	A	G	0.00196	USP40	-	FALSE
chr3	157161198	A	T	0.00486	VEPH1,PTX3	+,-	FALSE
chr1	109818160	T	G	0.00745	CELSR2	+	FALSE
chr3	81698130	T	C	2.93981E-08	GBE1	-	FALSE
chr1	16895634	T	G	0.00472	NBPF1	-	FALSE
chr3	53220215	G	A	2.78975E-05	PRKCD	+	FALSE
chr3	107526033	T	A	0.00056	BBX	+	FALSE
chr2	85773623	T	C	0.00203	GGCX	-	TRUE	AluSx1	SINE,Alu
chr4	141600320	A	G	0.00179	TBC1D9	-	FALSE
chr7	157129834	C	G	1.26796E-05	DNAJB6	+	FALSE
chr1	158067061	G	T	0.00093	KIRREL	+	FALSE
chr1	244572643	C	A	0.00681	ADSS	-	FALSE
chr2	85776648	T	C	0.00765	GGCX	-	TRUE	AluSz6	SINE,Alu
chr3	14526649	T	G	0.00260	SLC6A6	+	FALSE
chr11	32623987	T	A	5.29256E-06	CCDC73,EIF3M	+,-	FALSE
chr7	128169979	T	G	0.00569		.	FALSE
chr4	71682341	T	C	0.00584	GRSF1	-	TRUE	AluSz6	SINE,Alu
chr1	62164735	C	T	0.00016	TM2D1	-	FALSE	AluJb	SINE,Alu
chr6	108364582	T	C	0.00577	OSTM1	-	FALSE
chr4	57326291	A	G	0.00549	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	9161203	T	C	0.00235		.	FALSE	AluSx	SINE,Alu
chr14	103372464	C	A	0.00577	TRAF3	+	FALSE	(AC)n	SINE,Alu
chr1	31732514	C	T	0.00588	SNRNP40	-	FALSE
chr1	32661578	C	T	0.00694	TXLNA	+	FALSE	(T)n	SINE,Alu
chr1	10517352	T	C	0.00064		.	FALSE	AluJr	SINE,Alu
chr1	85733095	G	A	0.00651	BCL10	-	FALSE
chr1	19542401	T	C	0.00010	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	113247898	G	A	0.00077	RHOC	-	FALSE
chr3	42610374	A	G	0.00594	SEC22C	-	FALSE
chr1	151742798	T	C	0.00626	OAZ3	+	FALSE
chr9	139698779	C	G	0.00106	CCDC183,CCDC183-AS1	+,-	FALSE	L2b	SINE,Alu
chr8	42883403	A	G	0.00204	HOOK3	+	TRUE	AluJb	SINE,Alu
chr2	128064446	G	T	0.00652	MAP3K2	-	FALSE	(GT)n	SINE,Alu
chr1	93617546	T	C	0.00026	TMED5	-	FALSE
chr20	25427885	A	G	0.00455	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	10517313	T	C	0.00015		.	FALSE	AluJr	SINE,Alu
chr1	40361783	G	C	0.00023	MYCL	-	FALSE
chr2	206986949	T	C	0.00693		.	FALSE	AluJr	SINE,Alu
chr1	16889414	T	C	0.00679	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr6	42855972	A	G	0.00182	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	20401859	A	T	0.00930	SDC1	-	FALSE	(A)n	SINE,Alu
chr1	16909161	T	C	0.00718	NBPF1	-	FALSE
chr3	149036714	G	A	0.00972	TM4SF18	-	FALSE
chr1	27108139	A	T	0.00683	ARID1A	+	FALSE
chr9	131071533	T	C	0.00168	TRUB2	-	TRUE	FAM	SINE,Alu
chr1	74672640	T	A	0.00011	FPGT-TNNI3K,FPGT	+	FALSE
chr4	119555142	A	G	4.95460E-05	LOC729218	+	FALSE
chr1	1570921	C	T	0.00411	CDK11B	-	FALSE
chr1	10520888	C	T	0.00958	DFFA	-	FALSE
chr1	16945027	T	C	0.00483	CROCCP2	-	FALSE	L1ME3Cz	SINE,Alu
chr1	3697550	C	A	0.00078	LRRC47	-	FALSE	AluSc	SINE,Alu
chr3	15114293	T	C	2.60553E-05	RBSN	-	TRUE	AluY	SINE,Alu
chr2	101622888	T	A	0.00210	RPL31	+	FALSE
chr1	50906945	C	T	0.00178	FAF1	-	FALSE
chr1	108742130	T	C	1.29742E-06	SLC25A24	-	FALSE
chr15	41590972	A	G	2.40282E-05	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr2	61276758	A	G	0.00924	PEX13	+	TRUE	AluSp	SINE,Alu
chr9	136209399	A	T	0.00011	MED22	-	FALSE
chr1	179829200	T	C	0.00497	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr1	33148721	A	G	0.00359	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr5	79923912	T	C	0.00037	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	11979809	A	C	0.00744	KIAA2013	-	FALSE
chr4	152020779	G	T	0.00925	RPS3A	+	FALSE
chr5	56177846	G	C	0.00952	MAP3K1	+	FALSE
chr2	61764916	A	C	0.00361	XPO1	-	FALSE	(AC)n	SINE,Alu
chr9	70648427	G	A	0.00096		.	FALSE	TAR1	SINE,Alu
chr3	105295461	G	A	9.74520E-12	ALCAM	+	FALSE
chr1	65898263	A	G	0.00767	LEPR,LEPROT	+	FALSE	MIRc	SINE,Alu
chr2	201774185	T	C	0.00921		.	FALSE	AluSz	SINE,Alu
chr3	181430141	G	C	0.00086	SOX2-OT,SOX2	+	FALSE
chr1	63009329	T	G	0.00155	DOCK7	-	FALSE
chr1	26774224	A	G	0.00100	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr1	52816691	T	C	0.00353	CC2D1B	-	TRUE	AluSx1	SINE,Alu
chr2	62095566	C	T	0.00471	CCT4	-	FALSE
chr1	144618201	T	C	2.48995E-05	NBPF20,NBPF9	+	FALSE
chr1	31905886	C	A	0.00702	SERINC2	+	FALSE
chr1	231154921	C	T	0.00773	FAM89A	-	FALSE	(T)n	SINE,Alu
chr2	242512138	A	G	9.62871E-05	BOK	+	FALSE
chr5	125961534	A	G	0.00233	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	2113565	T	G	0.00429	PRKCZ	+	FALSE
chr1	28826085	A	G	0.00212	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr19	46053393	T	C	0.00514	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	9162348	T	C	0.00359		.	FALSE	AluSx	SINE,Alu
chr4	165998958	T	C	0.00021	TMEM192	-	TRUE	Alu	SINE,Alu
chr17	40723650	A	T	0.00250	MLX	+	FALSE
chr2	109374952	A	G	0.00031	RANBP2	+	FALSE
chr6	160526905	C	A	0.00268	IGF2R	+	FALSE
chr1	36068369	T	C	0.00252	PSMB2	-	TRUE	AluSc	SINE,Alu
chr6	42857058	A	G	3.29248E-05	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr7	36447346	G	A	0.00419	ANLN	+	FALSE
chr1	160967899	T	C	0.00011	F11R	-	TRUE	AluSp	SINE,Alu
chr12	57450118	T	A	0.00669	NEMP1	-	FALSE
chr3	12882839	C	G	0.00118	RPL32	-	FALSE
chr1	16889864	C	A	0.00598	NBPF1	-	FALSE
chr1	197475873	G	A	0.00844	DENND1B	-	FALSE
chr1	52520892	A	C	0.00292	TXNDC12	-	FALSE
chr1	45976257	C	A	0.00015	MMACHC	+	FALSE
chr1	110949720	C	T	0.00666	LAMTOR5	-	FALSE	L1ME4b	SINE,Alu
chr1	120163248	G	A	0.00204	ZNF697	-	FALSE
chr1	7737791	A	C	0.00017	CAMTA1	+	FALSE
chr3	75474643	T	C	0.00850	FAM86DP	-	TRUE	AluJo	SINE,Alu
chr19	42753649	G	C	0.00723	ERF	-	FALSE
chr1	19586458	A	G	2.46370E-10	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	10520487	T	C	0.00638		.	FALSE	AluSx1	SINE,Alu
chr4	128756738	A	G	0.00408		.	FALSE	AluSx	SINE,Alu
chr1	75190452	C	T	4.33030E-05	CRYZ	-	FALSE
chr3	126755134	C	T	0.00920	PLXNA1	+	FALSE
chr2	72403405	A	C	0.00227	EXOC6B	-	FALSE	GA-rich	SINE,Alu
chr1	1152309	A	T	0.00035	SDF4	-	FALSE
chr1	28566404	T	G	0.00963		.	FALSE	AluSx1	SINE,Alu
chr1	68943486	C	T	0.00079	DEPDC1	-	FALSE	(TTCTCTT)n	SINE,Alu
chr4	1205667	A	C	0.00611	CTBP1-AS,CTBP1	+,-	FALSE	(A)n	SINE,Alu
chr1	148004525	C	T	0.00541	NBPF8	-	FALSE
chr12	49075983	C	G	0.00321	KANSL2	-	FALSE
chr1	6279950	A	G	0.00541	RNF207	+	TRUE	AluSp	SINE,Alu
chr2	27995238	G	A	0.00345	MRPL33	+	FALSE
chr2	201676441	G	A	0.00140	LOC101927795,BZW1	+,-	FALSE
chr4	120979130	T	C	0.00729		.	FALSE	AluSg4	SINE,Alu
chr1	44088112	G	T	0.00822	PTPRF	+	FALSE	(T)n	SINE,Alu
chr1	236748403	G	C	0.00519	HEATR1	-	FALSE
chr1	42925688	T	G	0.00637	PPCS	+	FALSE
chr1	160967843	T	C	0.00247	F11R	-	TRUE	AluSp	SINE,Alu
chr5	64097145	C	G	0.00361	CWC27	+	FALSE
chr1	20977748	T	G	0.00474	PINK1,PINK1-AS	+,-	FALSE
chr1	204525713	A	G	0.00501	MDM4	+	TRUE	AluSz	SINE,Alu
chr2	99812864	A	G	0.00458	MRPL30	+	TRUE	AluJb	SINE,Alu
chr12	100562932	G	T	0.00079	GOLGA2P5	-	FALSE	AluSg	SINE,Alu
chr1	179072966	C	T	0.00107	ABL2	-	FALSE	MIRc	SINE,Alu
chr1	10521254	T	C	0.00522	DFFA	-	TRUE	AluY	SINE,Alu
chr1	1419690	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr14	50320630	G	C	0.00316		.	FALSE	7SLRNA	SINE,Alu
chr1	179044181	A	G	0.00660	FAM20B	+	TRUE	AluSx	SINE,Alu
chr8	144940792	G	C	9.20360E-05	EPPK1	-	FALSE
chr3	12624070	C	T	2.78764E-07	MKRN2	+	FALSE
chr2	91805938	A	G	0.00000		.	FALSE	MLT1H1	SINE,Alu
chr1	202992954	T	C	0.00042	TMEM183A	+	FALSE
chr1	10521200	T	C	3.54723E-07	DFFA	-	TRUE	AluY	SINE,Alu

RBP	CHD1
Knock-Method	siRNA
RBP Family	ResIII
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR181AXM
Platform	HiSeq
Pubmed ID	32252787

CHD1 - Target Gene Network