RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr12	125512516	A	G	8.94889E-06		.	FALSE	AluY	SINE,Alu
chr5	34906587	T	C	0.00442	RAD1	-	TRUE	AluJo	SINE,Alu
chr2	20401855	G	A	0.00107	SDC1	-	FALSE
chr6	42854739	A	C	0.00671	RPL7L1	+	FALSE	AluSc	SINE,Alu
chr9	130268408	T	C	0.00416	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr2	201774264	T	C	0.00639		.	FALSE	AluSz	SINE,Alu
chr1	79003523	C	G	0.00036	PTGFR	+	FALSE
chr4	2940091	T	C	0.00212	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr19	13054905	T	C	0.00324	CALR	+	FALSE	(T)n	SINE,Alu
chr12	12796592	A	C	0.00801	CREBL2	+	FALSE
chr6	42856064	A	G	0.00019	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	35648710	G	C	0.00377	SFPQ	-	FALSE
chr6	114182251	C	T	0.00021	MARCKS	+	FALSE
chr1	109780743	C	A	0.00643	SARS	+	FALSE
chr1	19543353	T	C	0.00091	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr6	27327349	C	G	0.00359	ZNF204P	-	FALSE
chr12	49745425	A	G	0.00489	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr7	44053729	T	C	0.00316	POLR2J4	-	FALSE	AluSg	SINE,Alu
chr1	931807	G	A	0.00578		.	FALSE
chr2	74332840	G	C	4.77205E-06	TET3	+	FALSE
chr1	210006603	C	T	0.00829	DIEXF	+	FALSE
chr1	10518616	G	A	0.00379		.	FALSE	AluSx1	SINE,Alu
chr1	32799512	A	T	0.00929	MARCKSL1	-	FALSE
chr17	41133089	C	T	0.00179	RUNDC1	+	FALSE
chr1	144881463	C	T	0.00147	NBPF20,PDE4DIP	+,-	FALSE
chr12	121769840	T	C	0.00499	ANAPC5	-	TRUE	AluJr	SINE,Alu
chr15	65442678	T	C	2.30704E-07	CLPX	-	TRUE	AluSg4	SINE,Alu
chr1	10519975	T	C	5.61936E-05		.	FALSE	AluJr	SINE,Alu
chr2	191799592	A	G	0.00021	GLS	+	TRUE
chr2	37327614	T	C	0.00035		.	FALSE
chr3	124948049	T	C	0.00069	ZNF148	-	TRUE
chr1	36614708	C	T	0.00201	TRAPPC3	-	FALSE
chr1	144595886	G	A	0.00205	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	54691922	T	A	0.00219	SSBP3	-	FALSE
chr3	155660873	A	G	0.00018		.	FALSE	AluSz	SINE,Alu
chr8	146200271	T	C	0.00182	ZNF252P	-	TRUE	AluSc	SINE,Alu
chr5	52397314	C	T	0.00249	MOCS2	-	FALSE
chr3	47627382	A	T	2.68370E-06	SMARCC1	-	FALSE
chr3	128338880	T	A	0.00828	RPN1	-	FALSE
chr1	36067925	T	C	1.81623E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	150548881	G	A	9.52924E-05	MCL1	-	FALSE
chr2	10179657	A	C	7.77751E-05		.	FALSE	L1ME4b	SINE,Alu
chr1	10520672	T	C	0.00584	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	9161142	T	C	8.95302E-05		.	FALSE	AluSx	SINE,Alu
chr1	6583109	T	C	6.65543E-05	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	27678721	A	G	0.00030	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr2	101622887	G	A	0.00711	RPL31	+	FALSE
chr1	10520180	T	C	0.00267		.	FALSE	AluSx	SINE,Alu
chr15	51294995	G	A	0.00268	AP4E1	+	FALSE
chr1	161559407	A	G	0.00237	FCGR2C	+	FALSE
chr1	16933629	A	G	0.00299	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr6	29857113	C	A	0.00582		.	FALSE
chr4	57327017	A	G	4.29594E-07	PAICS	+	TRUE	AluSx1	SINE,Alu
chr22	36677549	C	T	0.00040	MYH9	-	FALSE
chr6	107113953	C	G	0.00300	QRSL1	+	FALSE	AluSg	SINE,Alu
chr1	145512944	A	G	0.00110	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr8	61693942	G	A	0.00350	CHD7	+	FALSE
chr1	1595500	T	C	0.00845	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr1	246714587	G	A	0.00023	TFB2M	-	FALSE
chr2	206987634	T	C	0.00281		.	FALSE	AluJb	SINE,Alu
chr1	6582176	T	C	0.00694	NOL9	-	TRUE	AluSq4	SINE,Alu
chr4	37953902	T	C	0.00109	TBC1D1	+	FALSE
chr1	28859265	C	G	0.00030	RCC1	+	FALSE
chr1	19566382	A	G	0.00513	LOC101927895,EMC1	+,-	FALSE
chr1	9163383	T	C	0.00383		.	FALSE	AluSp	SINE,Alu
chr5	139931631	G	C	0.00138	SRA1	-	FALSE
chr1	76252687	T	C	0.00021	RABGGTB	+	FALSE
chr1	65692499	C	T	0.00235	AK4	+	FALSE	(T)n	SINE,Alu
chr1	16889502	T	C	0.00516	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	142690928	C	A	0.00022		.	FALSE
chr1	10520076	T	C	0.00763		.	FALSE	AluSx	SINE,Alu
chr1	179044100	A	G	0.00081	FAM20B	+	TRUE	AluSx	SINE,Alu
chr2	8823951	A	T	0.00251	ID2	+	FALSE
chr2	39009427	A	G	1.04745E-05		.	FALSE	AluSx3	SINE,Alu
chr1	55062960	G	A	0.00542	ACOT11	+	FALSE
chr1	156206121	G	A	0.00423	PMF1-BGLAP,PMF1	+	FALSE
chr5	180682604	A	T	0.00037	CTC-338M12.4	+	FALSE
chr10	75009591	T	C	8.39163E-08	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	110136329	G	T	0.00993	GNAI3	+	FALSE
chr12	33021934	A	G	0.00035	PKP2	-	FALSE
chr1	9910358	T	C	0.00083	CTNNBIP1	-	FALSE
chr3	197400501	C	G	0.00011	RUBCN	-	FALSE
chr1	9326888	T	C	0.00887	H6PD	+	FALSE	AluSx1	SINE,Alu
chr1	11979814	G	A	0.00041	KIAA2013	-	FALSE
chr7	129472357	A	G	0.00287	UBE2H	-	FALSE
chr1	35648711	A	C	0.00377	SFPQ	-	FALSE
chr14	31916462	T	C	0.00059	LOC101927124,DTD2	+,-	FALSE	FLAM_C	SINE,Alu
chr3	101284940	T	C	8.16697E-05	TRMT10C	+	FALSE
chr2	86252038	T	C	0.00453	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr12	133297934	A	G	9.03426E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	44401225	T	C	0.00802	ARTN	+	FALSE
chr3	160213318	T	G	0.00215	KPNA4	-	FALSE
chr4	140394600	G	A	0.00950	RAB33B	+	FALSE
chr5	40832557	G	T	0.00024	RPL37	-	FALSE
chr10	61548856	T	C	0.00067	CCDC6	-	FALSE
chr2	55255313	T	A	0.00675	RTN4	-	FALSE
chr1	36068237	T	C	0.00974	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	138156	G	T	0.00140	LOC729737	-	FALSE
chr5	180262080	A	G	0.00259	LINC00847	+	TRUE	MLT2B3	SINE,Alu
chr2	198339559	G	T	0.00712	COQ10B	+	FALSE
chr11	32625925	A	G	0.00845	CCDC73	-	FALSE	AluJb	SINE,Alu
chr3	120113403	T	G	0.00364	FSTL1	-	FALSE
chr7	6501833	A	T	0.00937	KDELR2	-	FALSE
chr1	145116325	T	C	0.00101	NBPF20,SEC22B	+	FALSE	(TTTTGTTT)n	SINE,Alu
chr2	36776056	T	A	0.00030	CRIM1	+	FALSE
chr1	179044174	A	G	0.00410	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	38327457	T	C	0.00305	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	28261658	T	G	0.00280	SMPDL3B	+	FALSE
chr1	211836207	T	A	0.00432	NEK2	-	FALSE
chr1	38326700	T	C	5.61462E-05	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	9161179	T	C	0.00570		.	FALSE	AluSx	SINE,Alu
chr1	55207988	G	A	0.00914	MROH7-TTC4,TTC4	+	FALSE
chr1	144833386	A	G	0.00325	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr1	21780000	G	T	0.00153	NBPF3	+	FALSE	ERVL-E-int	SINE,Alu
chrX	77083723	T	C	0.00163	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr14	19686683	G	A	0.00021	DUXAP10	+	FALSE
chr2	114220055	T	C	9.23000E-05	CBWD2	+	FALSE
chr7	44841239	T	A	0.00199	PPIA	+	FALSE
chr3	45721934	A	G	0.00639	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	16945570	A	G	0.00157	CROCCP2	-	FALSE
chr1	10519982	T	C	0.00417		.	FALSE	AluJr	SINE,Alu
chr1	10517306	T	C	0.00102		.	FALSE	AluJr	SINE,Alu
chr1	160967890	T	C	0.00876	F11R	-	TRUE	AluSp	SINE,Alu
chr1	145368461	A	C	0.00542	NBPF20,NBPF10	+	FALSE
chr3	181430144	C	T	0.00043	SOX2-OT,SOX2	+	FALSE
chr1	120497841	T	C	0.00673	NOTCH2	-	FALSE
chr22	31375020	T	A	0.00990	TUG1	+	FALSE
chr1	2241376	C	T	0.01000	SKI	+	FALSE
chr12	3150859	C	T	0.00317		.	FALSE	(CCTCCCTG)n	SINE,Alu
chr1	52253845	T	C	0.00889	OSBPL9	+	FALSE	(AT)n	SINE,Alu
chr3	156259317	T	C	0.00189	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	145283733	A	G	0.00458	NBPF20,NOTCH2NL	+	FALSE
chr1	45976257	C	A	0.00015	MMACHC	+	FALSE
chr2	37329307	T	C	0.00137		.	FALSE	AluJr4	SINE,Alu
chr2	37331116	T	C	0.00481		.	FALSE	AluSx1	SINE,Alu
chr3	52084404	A	T	0.00032	DUSP7	-	FALSE	(A)n	SINE,Alu
chr2	102484490	G	T	0.00635	MAP4K4	+	FALSE
chr1	217688165	C	A	0.00343	GPATCH2	-	FALSE
chr10	51374391	C	G	0.00028	TIMM23B	+	FALSE
chr1	17733268	T	C	0.00472	RCC2	-	FALSE
chr1	10520532	T	C	0.00013		.	FALSE	AluSx1	SINE,Alu
chr4	110635486	A	G	0.00021	PLA2G12A	-	FALSE
chr3	183534913	A	G	0.00367	MAP6D1	-	FALSE
chr2	206982296	T	C	0.00720		.	FALSE	AluSg7	SINE,Alu
chr4	103809241	A	T	0.00073	CISD2,SLC9B1	+,-	FALSE
chr12	133297956	A	G	4.23080E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	10520180	T	C	0.00959		.	FALSE	AluSx	SINE,Alu
chr1	949608	G	A	0.00435	ISG15	+	FALSE
chr8	73958240	G	A	0.00093	TERF1	+	FALSE
chr1	33149495	A	G	0.00421	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr5	41919747	C	T	0.00814	C5orf51	+	FALSE	L2c	SINE,Alu
chr1	16909220	T	C	0.00029	NBPF1	-	FALSE
chr1	28826118	A	G	0.00023	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	6282315	T	C	0.00508	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	20945055	C	T	0.00269	CDA	+	FALSE
chr1	148751869	A	G	0.00011		.	FALSE
chr4	109733172	T	C	0.00480	COL25A1	-	FALSE
chr10	75008817	T	C	1.29877E-10	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr16	88789700	C	T	0.00703	PIEZO1	-	FALSE
chr1	213071445	G	A	0.00233	FLVCR1	+	FALSE	MIR3	SINE,Alu
chr2	37230734	C	T	0.00025	HEATR5B	-	FALSE
chr1	211921702	T	C	1.94235E-05	LPGAT1	-	FALSE
chr1	26755175	G	C	0.00211	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr2	11053740	C	T	0.00402	KCNF1	+	FALSE
chr1	26161107	A	T	0.00022	AUNIP	-	FALSE	AluSc8	SINE,Alu
chr1	27634734	G	A	0.00978	WDTC1	+	FALSE
chr1	19934793	G	A	0.00068	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr2	172178680	T	C	9.91686E-05	METTL8	-	TRUE	AluSx3	SINE,Alu
chr2	36776053	T	C	0.00029	CRIM1	+	FALSE
chr19	42731991	A	G	0.00598		.	FALSE	AluJr	SINE,Alu
chr2	198416734	A	T	0.00257	HSPE1-MOB4,MOB4	+	FALSE
chr1	10519932	T	C	0.00547		.	FALSE	AluJr	SINE,Alu
chr1	145311900	C	T	0.00286	NBPF20,NBPF10	+	FALSE
chr1	19665310	C	T	0.00618	CAPZB	-	FALSE	(TTTCT)n	SINE,Alu
chr1	12071680	A	G	0.00127	MFN2	+	FALSE
chr1	6283430	T	C	0.00751	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	37331578	T	C	0.00675		.	FALSE	AluJb	SINE,Alu
chr3	15780233	C	T	1.83528E-06	ANKRD28	-	FALSE	MER11B	SINE,Alu
chr2	238463408	C	G	0.00644	MLPH	+	FALSE
chr1	19953120	G	A	0.00197	MINOS1,MINOS1-NBL1	+	FALSE
chr3	10290515	G	A	0.00904	TATDN2	+	FALSE
chr4	7762356	G	A	3.36293E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr3	49395692	G	A	0.00049	GPX1	-	FALSE	(GCC)n	SINE,Alu
chr1	110466466	T	C	0.00135	CSF1	+	FALSE
chr3	122283291	C	A	0.00061	DTX3L,PARP9	+,-	FALSE
chr1	146649854	C	T	0.00033	PDIA3P1	+	FALSE
chr1	899810	G	A	2.29962E-09	KLHL17	+	FALSE
chr1	19934793	G	A	0.00376	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr19	58357211	A	G	0.00041	ZNF587B	+	TRUE	AluSx3	SINE,Alu
chr1	116235277	C	T	0.00396	VANGL1	+	FALSE
chr1	16912029	C	G	0.00177	NBPF1	-	FALSE
chr1	87569223	G	C	0.00436	HS2ST1	+	FALSE
chr2	217366868	A	G	0.00100		.	FALSE	AluSz6	SINE,Alu
chr14	93712365	A	G	0.00210	BTBD7	-	FALSE
chr3	20195395	C	T	3.65176E-06	KAT2B	+	FALSE
chr5	177019207	T	G	0.00584	TMED9	+	FALSE
chr3	195393406	C	T	0.00690	SDHAP2	+	FALSE
chr1	23689522	G	T	0.00570	ZNF436	-	FALSE
chr1	20978304	T	A	0.00018	PINK1-AS,DDOST	-	FALSE	AluY	SINE,Alu
chr1	78342729	A	G	0.00175	MIGA1	+	TRUE	FRAM	SINE,Alu
chr1	10518797	T	C	0.00421		.	FALSE	AluSx1	SINE,Alu
chr1	16112795	A	G	1.78234E-05	FBLIM1	+	FALSE
chr1	120612194	C	G	1.19417E-05	NOTCH2	-	FALSE	(CCG)n	SINE,Alu
chr20	43707842	A	G	0.00100	STK4	+	TRUE	AluJb	SINE,Alu
chr1	10521238	T	C	0.00797	DFFA	-	TRUE	AluY	SINE,Alu
chr2	24224000	A	G	0.00464		.	FALSE	AluSp	SINE,Alu
chr4	73923043	T	C	0.00236	COX18	-	TRUE	AluSz	SINE,Alu
chr1	39470977	C	A	0.00347	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr1	10519912	T	C	5.10285E-06		.	FALSE	AluJr	SINE,Alu
chr18	61565062	C	G	0.00207	SERPINB2	+	FALSE
chrX	77083939	T	C	5.71267E-05	MAGT1	-	TRUE	AluSz	SINE,Alu
chr4	128758152	A	G	0.00198		.	FALSE	AluSx	SINE,Alu
chr2	242164677	A	G	0.00117	ANO7	+	TRUE	AluSg	SINE,Alu
chr1	23519110	G	A	0.00268	HTR1D	-	FALSE	AluSc	SINE,Alu
chr6	17557416	G	T	0.00885	CAP2	+	FALSE
chr1	26755643	A	G	0.00728	LIN28A	+	FALSE	AluSc	SINE,Alu
chr3	195415462	G	A	0.00140	LINC00969,SDHAP2	+	FALSE
chr1	46828700	A	G	0.00095	NSUN4	+	FALSE
chr16	9204015	C	T	0.00325	C16orf72	+	FALSE
chr1	100490000	A	G	0.00066	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	144833382	C	T	0.00325	NBPF20	+	FALSE	L1MEc	SINE,Alu
chr1	28826023	A	G	0.00143	PHACTR4	+	FALSE	AluJb	SINE,Alu
chr1	97543764	C	T	0.00840	DPYD	-	FALSE
chr1	109812555	A	C	3.87556E-05	CELSR2	+	FALSE
chr4	79447807	G	C	0.00339	FRAS1	+	FALSE
chr2	131131424	G	C	0.00845	PTPN18	+	FALSE
chr1	19543457	T	C	4.71011E-07	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr19	48753070	T	C	0.00214	CARD8	-	TRUE
chr1	144598726	A	C	0.00325	NBPF20	+	FALSE
chr2	87820785	C	T	0.00110	LINC00152	+	FALSE
chr16	31469051	T	C	0.00278		.	FALSE	AluSz	SINE,Alu
chr21	34728095	A	G	8.47848E-05	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr1	78483452	C	T	0.00045	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr10	88951001	G	A	0.00033	FAM35A	+	FALSE
chr2	206983491	T	C	0.00505		.	FALSE	AluSx	SINE,Alu
chr1	28261662	A	G	0.01000	SMPDL3B	+	FALSE
chr9	130209956	A	T	0.00221	RPL12	-	FALSE
chr2	32535287	A	G	0.00891		.	FALSE	FLAM_C	SINE,Alu
chr1	28906337	A	G	0.00810	SNHG12,SNORA61	-	FALSE
chr2	198416722	A	T	0.00970	HSPE1-MOB4,MOB4	+	FALSE
chr1	95362514	G	T	7.06346E-05	CNN3	-	FALSE
chr5	180663939	C	A	0.00522	RACK1	-	FALSE
chr1	39951484	C	A	0.00592	MACF1	+	FALSE
chr3	48787118	T	C	0.00248	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	32953214	A	G	0.00837	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr1	144595935	G	A	0.00837	NBPF20	+	FALSE	AluJb	SINE,Alu
chr4	126849	A	G	0.00018	ZNF718	+	TRUE	AluSc	SINE,Alu
chr1	154323558	A	T	0.00011	ATP8B2	+	FALSE
chr3	196079389	T	C	0.00509		.	FALSE	AluSx	SINE,Alu
chr1	25570565	G	A	0.00094	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	168218522	A	G	0.00073		.	FALSE	AluSz	SINE,Alu
chr3	10193797	A	G	0.00261	VHL	+	TRUE	AluSx	SINE,Alu
chr10	95163809	G	T	0.00453	MYOF	-	FALSE
chr4	164245873	T	A	0.00014	NPY1R	-	FALSE
chr19	19791270	A	G	0.00732	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr8	41401571	T	A	0.00240	LOC102723729,GINS4	+,-	FALSE
chr7	65618870	A	G	0.00097	CRCP	+	TRUE	AluSx3	SINE,Alu
chr7	66038472	G	A	0.00964	GS1-124K5.11	-	FALSE
chr7	72480095	A	G	0.00590	PMS2P2	+	FALSE

RBP	XRCC6
Knock-Method	shRNA
RBP Family	SAP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR232CPD
Platform	HiSeq
Pubmed ID	32252787

XRCC6 - Target Gene Network