RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	46077218	A	G	0.00543	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	112003958	T	A	0.00557	ATP5F1	+	FALSE	Helitron2Na_Mam	SINE,Alu
chr1	19542310	T	C	2.12437E-06	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	149459341	A	G	0.00042	COMMD2	-	FALSE
chr3	72426071	T	A	0.00169	RYBP	-	FALSE	(T)n	SINE,Alu
chr3	195242526	C	T	3.14972E-05	PPP1R2	-	FALSE
chr1	9331254	A	G	0.00793	H6PD	+	TRUE	AluSx	SINE,Alu
chr5	118175329	T	C	2.47285E-05	DTWD2	-	TRUE	AluJr	SINE,Alu
chr1	160967817	T	C	0.00478	F11R	-	TRUE	AluSp	SINE,Alu
chr1	59120961	G	A	9.55369E-05	MYSM1	-	FALSE
chr2	232028396	A	G	0.00701	PSMD1	+	FALSE
chr3	111732608	G	A	2.81327E-08	TAGLN3	+	FALSE
chr1	168212509	A	G	0.00765		.	FALSE
chr1	16889339	C	T	0.00129	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	95362949	A	T	0.00012	CNN3	-	FALSE	(A)n	SINE,Alu
chr4	184238324	G	A	0.00870	WWC2	+	FALSE
chr4	57327058	A	G	0.00129	PAICS	+	TRUE	AluSx1	SINE,Alu
chr2	101587455	C	T	0.00178	NPAS2	+	FALSE
chr1	145512950	A	G	2.03454E-08	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr16	10624953	T	C	0.00056	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	1252513	T	C	0.00043	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr3	33185037	A	C	0.00144	CRTAP	+	FALSE	L2a	SINE,Alu
chr3	167727417	C	T	2.31470E-08	GOLIM4	-	FALSE
chr1	114443475	A	G	0.00538	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr18	33831189	C	A	0.00763	MOCOS	+	FALSE
chr6	43582895	A	G	0.00983	POLH	+	TRUE	AluSx1	SINE,Alu
chr3	49395694	T	C	0.00074	GPX1	-	FALSE
chr2	36777209	T	C	0.00299	CRIM1	+	FALSE	(TG)n	SINE,Alu
chr11	60658566	A	C	0.00387	PRPF19	-	FALSE
chr8	27661063	T	A	0.00138	ESCO2	+	FALSE	(AC)n	SINE,Alu
chr2	204162601	A	G	0.00032	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr9	131872860	C	T	0.00141	CRAT	-	FALSE
chr19	18475303	A	G	0.00757	PGPEP1	+	TRUE	AluSx1	SINE,Alu
chr1	44072018	C	T	0.00160	PTPRF	+	FALSE
chr1	214529170	T	C	0.00670	PTPN14	-	TRUE
chr1	36531781	G	A	0.00288		.	FALSE
chr1	78142985	T	C	0.00012	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr4	178281754	G	A	0.00057	NEIL3	+	FALSE
chr1	45976723	T	C	0.00239	MMACHC,PRDX1	+,-	FALSE
chr7	299843	G	A	6.16222E-05	FAM20C	+	FALSE
chr3	39137794	T	C	0.00240	WDR48	+	FALSE
chr1	145511988	A	G	0.00131	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr11	32625925	A	G	0.00845	CCDC73	-	FALSE	AluJb	SINE,Alu
chr1	205112911	T	C	0.00161	DSTYK	-	FALSE
chr1	46774783	A	G	1.06423E-10	UQCRH	+	FALSE	(AGG)n	SINE,Alu
chr7	115898258	A	T	0.00314	TES	+	FALSE	(T)n	SINE,Alu
chr2	203744241	T	C	0.00511		.	FALSE	AluSx	SINE,Alu
chr2	164466037	A	T	0.00090	FIGN	-	FALSE
chr12	98942690	A	G	3.03569E-06	TMPO	+	TRUE	AluSc	SINE,Alu
chr19	13883923	A	G	0.00493	MRI1	+	TRUE	AluSz	SINE,Alu
chr1	54871874	C	T	2.61533E-07	SSBP3	-	FALSE
chr1	33149508	A	G	0.00871	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr16	11931208	A	T	0.00316	RSL1D1	-	FALSE
chr1	2336210	C	T	0.00509	RER1	+	FALSE
chr1	201434740	G	A	0.00471	PHLDA3	-	FALSE
chr2	27293352	A	T	0.00314	AGBL5,OST4	+,-	FALSE
chr1	31905888	C	A	0.00667	SERINC2	+	FALSE
chr2	86252214	T	C	0.00930	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr4	57326329	A	G	0.00077	PAICS	+	TRUE	AluJr	SINE,Alu
chr5	72801321	T	A	0.00427	BTF3	+	FALSE
chr1	33149443	A	G	0.00327	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr3	183534170	C	T	0.00090	MAP6D1	-	FALSE
chr1	70904800	G	T	0.00020	CTH	+	FALSE
chr1	134370	T	C	0.00327		.	FALSE	AluSg	SINE,Alu
chr12	120898658	A	G	0.00372	GATC	+	TRUE	AluY	SINE,Alu
chr15	41597574	A	G	2.24597E-05		.	FALSE	AluSz6	SINE,Alu
chr1	900720	A	T	0.00065	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	160967855	T	C	0.00050	F11R	-	TRUE	AluSp	SINE,Alu
chr2	25044957	G	A	0.00651	CENPO,ADCY3	+,-	FALSE
chr1	162497739	G	C	0.00138	UHMK1	+	FALSE
chr19	21273765	A	G	0.00253	ZNF714	+	FALSE	AluSc	SINE,Alu
chr1	9324670	A	G	0.00734	H6PD	+	FALSE
chr3	185826740	T	G	0.00041	ETV5	-	FALSE
chr2	129024408	G	A	0.00502	HS6ST1	-	FALSE
chr5	118174733	T	C	0.00037	DTWD2	-	TRUE	AluY	SINE,Alu
chr1	19542631	T	C	0.00741	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr4	139088295	C	T	0.00537	SLC7A11-AS1,SLC7A11	+,-	FALSE
chr17	57279273	A	G	0.00513	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	46075724	A	G	0.00990	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	38182164	T	A	3.45866E-07	EPHA10	-	FALSE
chr1	142688506	T	C	4.54862E-05		.	FALSE
chr3	170021210	C	A	0.00015	PRKCI	+	FALSE
chr1	6282255	T	C	0.00954	ICMT	-	TRUE	AluSz	SINE,Alu
chr4	843695	A	G	0.00602	GAK	-	FALSE
chr1	16890672	G	A	0.00142	NBPF1	-	FALSE
chr2	99812817	A	G	0.00018	MRPL30	+	TRUE	AluJb	SINE,Alu
chr2	103332887	T	A	0.00515	MFSD9	-	FALSE	L2d2	SINE,Alu
chr1	205687344	C	T	0.00633	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr1	26138325	G	A	0.00027	SEPN1	+	FALSE
chr1	155161702	G	C	0.00020	MUC1	-	FALSE
chr19	58375195	A	G	0.00080	ZNF587	+	TRUE	AluSx4	SINE,Alu
chr1	90401562	C	A	0.00057	LRRC8D	+	FALSE
chr1	36068369	T	C	0.00252	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	213069783	A	G	0.00600	FLVCR1	+	FALSE
chr13	52952575	G	A	0.00030	THSD1	-	FALSE
chr1	1595048	T	C	0.00495	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	114306372	A	G	0.00443	RSBN1	-	FALSE
chr1	9162223	T	C	0.00586		.	FALSE	AluSx	SINE,Alu
chr17	57281034	A	G	0.00111	PRR11	+	TRUE	AluSz	SINE,Alu
chr1	142688599	A	G	0.00860		.	FALSE
chr1	19232017	T	G	0.00723	IFFO2	-	FALSE
chr1	231398555	A	G	0.00401	GNPAT	+	FALSE
chr6	41888827	C	G	0.00936	MED20	-	FALSE
chr1	109818158	C	T	0.00212	CELSR2	+	FALSE
chr2	86249961	T	C	0.00292	LOC90784	-	TRUE	AluJr	SINE,Alu
chr1	145689611	C	A	0.00142	NBPF20,NBPF10	+	FALSE	AluSg	SINE,Alu
chr1	117532372	G	T	0.00678	PTGFRN	+	FALSE
chr1	119574537	G	A	0.00783	WARS2	-	FALSE
chr2	20648145	A	C	3.92667E-06	RHOB	+	FALSE
chr9	37503313	A	G	0.00584	POLR1E	+	TRUE	AluJb	SINE,Alu
chr1	145369589	T	C	0.00046	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	74672640	T	A	0.00011	FPGT-TNNI3K,FPGT	+	FALSE
chr2	47130527	G	A	0.00462	MCFD2	-	FALSE
chr1	180855948	G	A	0.00218	XPR1	+	FALSE
chr15	31619607	G	A	0.00887	KLF13	+	FALSE
chr14	63841400	A	C	0.00122	PPP2R5E	-	FALSE
chr13	52327020	G	A	0.00019	WDFY2	+	FALSE
chr2	101623611	A	C	0.00826	RPL31	+	FALSE
chr1	46075779	A	G	0.00640	NASP	+	TRUE	AluSx4	SINE,Alu
chr7	117832138	G	A	0.00885	LSM8	+	FALSE
chr5	96110613	T	A	0.00993	ERAP1	-	FALSE
chr10	12292344	A	G	0.00434	CDC123	+	FALSE
chr16	10625102	T	C	0.00129	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	226259212	C	A	0.00167	H3F3AP4,H3F3A	+	FALSE
chr10	11912065	C	G	0.00191	PROSER2-AS1,PROSER2	+,-	FALSE
chr1	15909850	C	G	0.00660	AGMAT	-	FALSE
chr2	172178540	T	C	0.00040	METTL8	-	TRUE	AluSx3	SINE,Alu
chr3	196079700	T	C	0.00518		.	FALSE	AluSc	SINE,Alu
chr1	144852476	T	C	0.00735	NBPF20,PDE4DIP	+,-	FALSE
chr1	179811337	C	A	0.00670	TOR1AIP2	-	FALSE	AluSp	SINE,Alu
chr1	15394279	G	C	0.00215	KAZN	+	FALSE
chr1	220232143	T	C	7.81076E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr5	178508569	C	T	0.00571	ZNF354C	+	FALSE
chr1	94703005	C	G	0.00180	ARHGAP29	-	FALSE
chr4	39549797	T	C	0.00196	UGDH-AS1,SMIM14	+,-	FALSE	AluSp	SINE,Alu
chr1	26450101	A	G	0.00764	PDIK1L	+	FALSE
chr2	160659996	G	A	0.00177	LY75-CD302,LY75	-	FALSE
chr2	55255313	T	A	0.00675	RTN4	-	FALSE
chr1	78483452	C	T	0.00094	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr3	45748599	T	A	0.00470	SACM1L	+	FALSE
chr1	16934178	C	T	0.00382	NBPF1	-	FALSE
chr1	87379494	A	T	0.00364	SEP15	-	FALSE
chr3	160283126	A	C	0.00564	KPNA4	-	FALSE
chr1	1152631	C	A	0.00439	SDF4	-	FALSE
chr16	10625320	T	C	0.00923	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	28834154	G	T	0.00012	SNHG3,RCC1	+	FALSE	AluSg	SINE,Alu
chr10	75009720	T	C	0.00016	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr2	176792357	A	G	7.02808E-05	LNPK	-	FALSE
chr14	53242746	T	C	0.00051	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr1	44818528	T	G	0.00486	ERI3	-	FALSE
chr3	192515510	G	T	0.00559	MB21D2	-	FALSE
chr14	102901023	G	A	0.00546	TECPR2	+	FALSE
chr1	32801694	A	C	0.00847	MARCKSL1	-	FALSE
chrX	123045103	A	G	0.00996	XIAP	+	TRUE	AluSp	SINE,Alu
chr3	88104168	C	T	0.00919	CGGBP1	-	FALSE
chr17	48155425	G	A	0.00603	ITGA3	+	FALSE
chr1	12677547	G	A	0.00543	DHRS3	-	FALSE	(A)n	SINE,Alu
chr1	19542455	T	C	0.00263	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	50296329	G	A	0.00884	GNAI2	+	FALSE
chr1	109475543	A	G	0.00325	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	204525548	A	G	0.00027	MDM4	+	TRUE	AluSz	SINE,Alu
chr2	47130850	A	G	0.00875	MCFD2	-	FALSE
chr4	103809241	A	T	0.00073	CISD2,SLC9B1	+,-	FALSE
chr2	32535865	A	G	0.00684		.	FALSE	AluJb	SINE,Alu
chr1	9294903	C	G	0.00353	H6PD	+	FALSE
chr1	28835934	A	G	0.00596	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr3	14986104	T	C	0.00992	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	16889466	A	C	0.00665	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr17	25640011	A	G	0.00228	WSB1	+	TRUE	AluSx	SINE,Alu
chr1	24862643	T	G	0.00079	RCAN3	+	FALSE
chr2	202252539	G	A	0.00293	TRAK2	-	FALSE
chr3	14239845	G	A	0.00375	LSM3	+	FALSE
chr4	70707440	T	C	0.00059	SULT1E1	-	FALSE	AluJr	SINE,Alu
chr11	65404870	C	T	0.00160	PCNX3	+	FALSE
chr1	70611296	A	T	0.00061	LRRC40	-	FALSE
chr2	114356360	G	A	0.00520	WASH2P	+	FALSE
chr3	48787674	T	C	0.00240	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr3	183861750	A	C	1.09807E-05	EIF2B5	+	FALSE
chr1	40537924	G	A	0.00245	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	35817022	T	A	0.00072	ZMYM4	+	FALSE
chr1	9160900	T	C	0.00893		.	FALSE	AluJb	SINE,Alu
chr1	10517635	T	C	0.00124		.	FALSE	AluSx1	SINE,Alu
chr5	154194459	C	A	0.00832	LARP1	+	FALSE
chr1	67874697	T	C	0.00119	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	217602945	G	A	0.00116	GPATCH2	-	FALSE	AluSx1	SINE,Alu
chr1	10520672	T	C	0.00222	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	55316322	A	G	0.00172	DHCR24	-	FALSE
chr1	148252049	A	C	0.00042	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	40219280	T	C	0.00169	PPIE	+	FALSE
chr15	41591451	A	G	1.78515E-09	OIP5-AS1	+	TRUE	AluSx	SINE,Alu
chr3	5026730	T	C	0.00488	BHLHE40	+	FALSE
chr15	92715131	A	T	0.00306	SLCO3A1	+	FALSE
chr1	3545194	C	G	0.00254	TPRG1L	+	FALSE
chr16	87443734	C	T	0.00074	ZCCHC14	-	FALSE
chr17	79004271	T	C	0.00200	BAIAP2-AS1	-	FALSE	AluSq2	SINE,Alu
chr3	195415493	C	T	0.00126	LINC00969,SDHAP2	+	FALSE	L1ME2	SINE,Alu
chr2	175711942	C	T	8.43847E-05	CHN1	-	FALSE
chr1	58999651	T	G	0.00332	OMA1	-	FALSE
chr17	79514129	G	A	0.00164	FAAP100	-	FALSE
chr3	191114266	T	C	0.00258	CCDC50	+	FALSE
chr16	15198598	C	T	0.00494	PDXDC1,PKD1P6-NPIPP1,LOC100505915	+,-	FALSE
chr3	20025677	G	T	0.00116	RAB5A,PP2D1	+,-	FALSE
chr2	72968440	T	A	0.00138	EXOC6B	-	FALSE
chr1	45975345	A	G	0.00071	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr3	47386061	A	C	8.10198E-06	KLHL18	+	FALSE
chr1	45976269	C	G	0.00039	MMACHC	+	FALSE
chr1	9163402	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr9	137330714	A	C	0.00030	RXRA	+	FALSE
chr2	85772404	C	A	0.00015	GGCX	-	FALSE
chr1	201438096	G	T	1.87636E-05	PHLDA3	-	FALSE
chr1	45975345	A	G	0.00227	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr4	56295166	A	G	0.00988	CLOCK	-	FALSE
chr1	160062340	G	A	0.00967	IGSF8	-	FALSE
chr3	12624763	T	C	1.62214E-06	MKRN2	+	FALSE
chr1	145442111	C	A	0.00090	NBPF20,NBPF10,TXNIP	+	FALSE
chr1	110049203	G	C	0.00209		.	FALSE
chr6	42047426	A	G	0.00676	TAF8	+	TRUE	AluSz6	SINE,Alu
chr1	31732601	A	T	0.00175	SNRNP40	-	FALSE
chr10	98278593	A	T	0.00792	TM9SF3	-	FALSE
chr6	74303531	T	C	0.00487	SLC17A5	-	TRUE	AluJr	SINE,Alu
chr2	210885022	C	T	0.00325	RPE	+	FALSE
chr2	103333654	A	T	0.00488	MFSD9	-	FALSE	AluYm1	SINE,Alu
chr1	155853219	A	G	0.00520	SYT11	+	TRUE	AluJb	SINE,Alu
chr15	90820095	A	G	6.27827E-07		.	FALSE	AluY	SINE,Alu
chr1	1345006	A	G	0.00123		.	FALSE	AluSg	SINE,Alu
chr1	35646125	C	T	0.00027	SFPQ	-	FALSE
chr9	131071533	T	C	0.00168	TRUB2	-	TRUE	FAM	SINE,Alu
chr14	53243434	T	C	5.94655E-10	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr5	79922263	T	G	0.00913	DHFR	-	FALSE	HAL1	SINE,Alu
chr11	65404877	G	A	0.00106	PCNX3	+	FALSE
chr1	16933638	G	A	4.07227E-05	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	23408016	C	A	4.80633E-05	KDM1A	+	FALSE
chr1	11141187	C	G	0.00814	EXOSC10	-	FALSE
chr1	144595935	G	A	0.00860	NBPF20	+	FALSE	AluJb	SINE,Alu
chr6	31626580	G	A	0.00291		.	FALSE
chr3	42592902	T	C	5.80731E-05	SEC22C	-	FALSE	AluJr	SINE,Alu
chr1	109465171	T	A	0.00989	GPSM2	+	FALSE
chr2	98409998	G	T	0.00261	TMEM131	-	FALSE
chr4	67846	C	A	0.00573	ZNF718,ZNF595	+	FALSE	AluYk3	SINE,Alu
chr1	54692331	T	C	0.00549	SSBP3	-	FALSE	(T)n	SINE,Alu
chr5	180663941	G	T	0.00166	RACK1	-	FALSE
chr3	109049163	A	G	0.00440	DPPA4	-	FALSE	AluSp	SINE,Alu
chr2	130795675	C	T	0.00578	FAR2P1	-	FALSE
chr1	33149376	A	G	0.00284	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr2	61277798	A	G	0.00077	PEX13	+	TRUE	AluY	SINE,Alu
chr1	45975584	T	C	0.00327	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr1	39549983	G	A	0.00896	MACF1	+	FALSE
chr16	10623577	T	C	0.00408	EMP2	-	TRUE	AluSp	SINE,Alu
chr3	15113842	T	C	0.00100	RBSN	-	TRUE	AluSz6	SINE,Alu
chr13	30084952	G	A	0.00045	SLC7A1	-	FALSE
chr8	146200271	T	C	0.00182	ZNF252P	-	TRUE	AluSc	SINE,Alu
chr3	156258230	T	C	0.00011	SSR3	-	TRUE	AluYk3	SINE,Alu

RBP	HNRNPA2B1
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR769GES
Platform	HiSeq
Pubmed ID	32252787

HNRNPA2B1 - Target Gene Network