RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr7	25161424	T	C	0.00669	CYCS	-	TRUE	AluSz6	SINE,Alu
chr1	12677525	G	A	0.00122	DHRS3	-	FALSE	(A)n	SINE,Alu
chr1	1570928	G	T	0.00173	CDK11B	-	FALSE
chr17	57279258	A	G	0.00114	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	16890130	A	C	0.00753	NBPF1	-	FALSE
chr1	101541172	A	G	6.48917E-05	LOC102606465	+	TRUE	MLT1K	SINE,Alu
chr1	145282799	G	A	0.00081	NBPF20,NOTCH2NL	+	FALSE
chr2	26613949	A	G	0.00669	EPT1	+	FALSE
chr1	38001614	T	C	0.00222	SNIP1	-	TRUE	AluSx	SINE,Alu
chr2	162165008	A	T	0.00539	PSMD14	+	FALSE
chr2	85773689	T	C	0.00104	GGCX	-	TRUE	AluSx1	SINE,Alu
chr5	149829076	G	C	0.00288	RPS14	-	FALSE
chr2	132278176	T	G	0.00291	LOC150776	+	FALSE
chr2	37331841	C	T	0.00179		.	FALSE	L1MC4	SINE,Alu
chr1	36770600	G	T	0.00792	THRAP3	+	FALSE	(T)n	SINE,Alu
chr20	25427801	A	G	0.00300	GINS1	+	TRUE	AluSz	SINE,Alu
chr15	85185502	T	C	0.00058	WDR73,SCAND2P	+,-	FALSE	AluSc	SINE,Alu
chr1	46829013	A	G	0.00360	NSUN4	+	FALSE
chr1	179876988	C	G	0.00047	TOR1AIP1	+	FALSE
chr6	42981525	G	C	0.00041	MEA1	-	FALSE
chr1	33148706	A	G	0.00087	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	15993514	C	T	0.00802		.	FALSE	AluSx4	SINE,Alu
chr16	29454295	T	C	0.00019	SMG1P6,BOLA2-SMG1P6	-	TRUE	Tigger4a	SINE,Alu
chr1	10517653	T	C	0.00094		.	FALSE	AluSx1	SINE,Alu
chr1	112170157	C	G	0.00335	RAP1A	+	FALSE	L1ME4a	SINE,Alu
chr1	93827764	A	G	0.00053	DR1	+	FALSE
chr2	201774244	T	C	0.00332		.	FALSE	AluSz	SINE,Alu
chr1	33146255	C	A	0.00182	SYNC,RBBP4	+,-	FALSE
chr15	49454018	C	T	0.00053	GALK2	+	FALSE	AluSx1	SINE,Alu
chr7	94060361	C	T	2.02320E-06	COL1A2	+	FALSE
chr2	37429532	A	G	0.00014	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	16254872	C	A	4.87895E-08	SPEN	+	FALSE
chr1	52816612	T	C	0.00890	CC2D1B	-	TRUE	AluSx1	SINE,Alu
chr2	201774185	T	C	6.12175E-05		.	FALSE	AluSz	SINE,Alu
chr1	1595006	T	C	1.43617E-06	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr14	21929014	T	C	0.00749	RAB2B	-	TRUE	AluSp	SINE,Alu
chr4	39552174	T	C	0.00026	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	144916748	C	G	0.00354	NBPF20,PDE4DIP	+,-	FALSE
chr1	51820588	G	A	0.00807	EPS15	-	FALSE
chr1	117648269	G	A	0.00988		.	FALSE	AluSz6	SINE,Alu
chr1	19984104	A	C	0.00402	MINOS1-NBL1,NBL1	+	FALSE
chr2	37327676	T	C	0.00462		.	FALSE
chr16	10624953	T	C	0.00056	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	146650542	A	G	0.00172	PDIA3P1	+	FALSE
chr1	146400122	C	G	0.00039	NBPF20,NBPF10,NBPF25P,NBPF12	+	FALSE
chr3	107526033	T	A	0.00056	BBX	+	FALSE
chr1	52520866	C	T	0.00108	TXNDC12	-	FALSE
chr1	145689025	A	G	0.00541	NBPF20,NBPF10	+	TRUE	AluSc8	SINE,Alu
chr1	3761479	C	T	0.00226	CEP104	-	FALSE
chr1	36068276	T	C	5.36857E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr4	2940371	T	C	0.00150	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr19	11256672	T	C	9.28647E-11	SPC24	-	TRUE	AluJr4	SINE,Alu
chr16	10626630	T	C	0.00051	EMP2	-	FALSE	(T)n	SINE,Alu
chr4	155457051	A	T	0.00378	PLRG1	-	FALSE	L2d2	SINE,Alu
chr19	21302035	A	G	5.57890E-05	ZNF714	+	TRUE	AluSg4	SINE,Alu
chr3	45267450	C	G	0.00036	TMEM158	-	FALSE
chr1	16952920	G	A	0.00475	CROCCP2	-	FALSE
chr8	40011786	C	A	0.00196	C8orf4	+	FALSE
chr10	82192266	A	G	0.00391	FAM213A	+	TRUE	AluSx1	SINE,Alu
chr2	37328008	T	C	0.00733		.	FALSE
chr4	68587786	G	T	0.00658	UBA6-AS1	+	FALSE	MER41B	SINE,Alu
chr1	144955288	A	G	0.00574	NBPF20,PDE4DIP	+,-	FALSE
chr3	88191444	A	C	0.00020	CGGBP1,ZNF654	+,-	FALSE
chr1	46075171	A	C	0.00140	NASP	+	FALSE	A-rich	SINE,Alu
chr1	40213412	A	G	0.00235	PPIE	+	TRUE	AluSx3	SINE,Alu
chr2	219146868	T	C	0.00764	PNKD,TMBIM1	+,-	FALSE
chr1	78483452	C	T	0.00739	DNAJB4	+	FALSE	L1MB7	SINE,Alu
chr1	10521254	T	C	0.00640	DFFA	-	TRUE	AluY	SINE,Alu
chr6	42856330	A	G	2.22045E-16	RPL7L1	+	TRUE
chr2	99992822	A	C	0.00266	EIF5B	+	FALSE
chr5	17276742	G	A	0.00320	BASP1	+	FALSE
chr5	139931630	A	T	0.00052	SRA1	-	FALSE
chr1	36921372	A	T	0.00259	MRPS15	-	FALSE
chr22	39259534	A	G	0.00371	CBX6	-	FALSE
chr1	1252513	T	C	0.00013	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	144931727	G	A	4.04936E-05	NBPF20,PDE4DIP	+,-	FALSE
chr2	32535691	A	G	0.00023		.	FALSE	AluJb	SINE,Alu
chr1	10518591	A	T	0.00545		.	FALSE
chr1	6283332	T	C	6.58989E-06	ICMT	-	TRUE	AluSx3	SINE,Alu
chr10	104661031	A	G	0.00265	BORCS7-ASMT,AS3MT	+	TRUE	AluY	SINE,Alu
chr2	238244963	A	G	0.00124	COL6A3	-	FALSE
chr1	11084105	T	A	0.00116	TARDBP	+	FALSE
chr1	46077345	A	G	0.00024	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	16901668	T	C	0.00421	NBPF1	-	FALSE
chr1	67874689	T	C	0.00112	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	86816600	A	G	0.00830	ODF2L	-	FALSE	L1PA7	SINE,Alu
chr1	148241546	G	A	0.00416	NBPF8	-	FALSE	U1	SINE,Alu
chr4	119956116	G	T	0.00442	SYNPO2	+	FALSE
chr7	44841799	A	G	0.00693	PPIA	+	TRUE	AluSx	SINE,Alu
chr1	65692499	C	T	0.00930	AK4	+	FALSE	(T)n	SINE,Alu
chr1	19542250	T	C	3.30618E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr14	69704553	G	T	7.62587E-05	EXD2	+	FALSE
chr12	98942886	A	G	1.80851E-07	TMPO	+	TRUE	AluSc	SINE,Alu
chr5	125961648	A	G	4.28370E-08	PHAX	+	FALSE	AluSz6	SINE,Alu
chr1	150937960	G	C	0.00014	CERS2	-	FALSE	G-rich	SINE,Alu
chr7	299843	G	A	6.16222E-05	FAM20C	+	FALSE
chr9	115448785	C	T	0.00195	INIP	-	FALSE	AluSz	SINE,Alu
chr1	25894468	C	G	0.00265	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr5	79923998	T	C	0.00753	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	171486912	G	A	0.00866	PRRC2C	+	FALSE
chr1	229762054	T	A	0.00535	URB2	+	FALSE
chr4	128958127	A	G	0.00556	ABHD18	+	TRUE	AluSx3	SINE,Alu
chr6	42855256	A	G	0.00572	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr14	66209686	T	A	7.37485E-06	FUT8	+	FALSE	(TT)n	SINE,Alu
chr3	183976477	C	T	0.00215	ECE2	+	FALSE
chr1	200941185	T	G	0.00729	KIF21B	-	FALSE
chr1	54691922	T	A	0.00224	SSBP3	-	FALSE
chr1	109855150	A	C	0.00062	SORT1	-	FALSE	A-rich	SINE,Alu
chr6	160526910	A	T	0.00672	IGF2R	+	FALSE
chr4	165998694	T	C	0.00041	TMEM192	-	TRUE	AluSg	SINE,Alu
chr3	169810385	C	T	0.00621	PHC3	-	FALSE
chr2	37328013	T	C	0.00401		.	FALSE
chr1	26158908	G	C	0.00181	MTFR1L,AUNIP	+,-	FALSE
chr1	28662182	A	G	0.00402	MED18	+	TRUE	AluSq2	SINE,Alu
chr2	120021785	T	C	0.00751	STEAP3	+	FALSE
chr1	11814631	A	G	5.11326E-05		.	FALSE
chr12	69237053	A	G	0.00331	MDM2	+	TRUE
chr2	47387307	G	T	0.00035	CALM2	-	FALSE
chr3	181430334	G	A	0.00305	SOX2-OT,SOX2	+	FALSE
chr3	120115286	T	G	0.00077	FSTL1	-	FALSE
chr1	16928622	C	A	0.00011	NBPF1	-	FALSE
chr1	15991645	T	C	0.00361		.	FALSE	AluSp	SINE,Alu
chr22	36677551	T	C	7.06365E-05	MYH9	-	FALSE
chr1	23409538	G	A	0.00464	KDM1A	+	FALSE
chr1	87213174	T	G	0.00081	SH3GLB1	+	FALSE
chr2	217366499	A	G	0.00063		.	FALSE	AluSz	SINE,Alu
chr7	131241085	G	A	0.00600	PODXL	-	FALSE	(GCA)n	SINE,Alu
chr1	144922583	G	A	0.00101	NBPF20,PDE4DIP	+,-	FALSE
chr1	19543456	T	C	0.00451	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	16787985	A	G	0.00053		.	FALSE	AluSz	SINE,Alu
chr12	124146569	A	G	0.00013	GTF2H3	+	TRUE	AluSq2	SINE,Alu
chr1	16912014	A	C	0.00704	NBPF1	-	FALSE
chr8	42882287	A	G	0.00771	HOOK3	+	TRUE	AluSx1	SINE,Alu
chr3	15113656	T	C	1.73787E-06	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	120166681	G	A	0.00241	ZNF697	-	FALSE
chr2	208619320	A	G	0.00339	CCNYL1	+	FALSE	EutTc1-N1	SINE,Alu
chr11	76733943	A	G	0.00925	ACER3	+	FALSE	A-rich	SINE,Alu
chr1	144930940	T	C	6.15272E-05	NBPF20,PDE4DIP	+,-	FALSE
chr1	143135240	C	T	0.00391	LOC102723769	-	FALSE
chr1	207943211	G	A	0.00248	CD46	+	FALSE	AluSx1	SINE,Alu
chr1	6583066	T	C	0.00173	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	23381596	T	C	0.00762	KDM1A	+	FALSE
chr1	89649522	T	C	0.00358	GBP4	-	TRUE	AluJb	SINE,Alu
chr19	46053370	T	C	0.00045	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	1431502	G	A	0.00127	ATAD3B	+	FALSE
chr3	195451488	C	T	1.73907E-06	MUC20	+	FALSE
chr5	174956497	C	T	0.00487	SFXN1	+	FALSE
chr7	96318078	A	T	0.00790		.	FALSE
chr3	40353799	G	T	0.00906	EIF1B	+	FALSE
chr1	53288862	A	G	0.00503	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr7	44917405	C	T	0.00024	PURB	-	FALSE	AluSz	SINE,Alu
chr1	9644558	A	G	0.00644		.	FALSE	AluSx	SINE,Alu
chr2	61416411	T	G	0.00146	USP34	-	FALSE	AluSc8	SINE,Alu
chr2	10586903	A	C	0.00041	ODC1,SNORA80B	-	FALSE
chr17	263417	C	T	0.00675	LOC105371430,C17orf97	+,-	FALSE
chr1	45976723	T	C	5.68535E-05	MMACHC,PRDX1	+,-	FALSE
chr19	3540006	T	C	3.25622E-05	C19orf71	+	FALSE	AluJo	SINE,Alu
chr2	37331546	T	C	0.00694		.	FALSE	AluJb	SINE,Alu
chr1	169101269	T	G	0.00207	ATP1B1	+	FALSE	(T)n	SINE,Alu
chrX	77083645	T	C	4.59952E-07	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr11	68523337	T	C	0.00016	CPT1A	-	TRUE	AluSq	SINE,Alu
chr5	151041869	T	A	0.00305	SPARC	-	FALSE
chr7	26708303	G	T	0.00095	SKAP2	-	FALSE	AluSx3	SINE,Alu
chr1	212277584	G	C	0.00997	DTL	+	FALSE
chr6	33281842	G	T	0.00514		.	FALSE
chr2	43625184	T	A	0.00587	THADA	-	FALSE
chr1	45452227	G	C	0.00046	EIF2B3	-	FALSE
chr5	115166350	T	C	0.00148	ATG12	-	TRUE	AluJr	SINE,Alu
chr3	195461463	A	G	0.00609		.	FALSE	AluJb	SINE,Alu
chr1	186641127	A	T	0.00546	PTGS2	-	FALSE
chr1	32953296	A	G	5.26589E-05	ZBTB8B	+	TRUE	AluSz	SINE,Alu
chr1	1251631	T	C	0.00256	CPSF3L	-	TRUE	AluSz	SINE,Alu
chr1	16133978	T	C	0.00625	UQCRHL	-	FALSE
chr2	48025764	C	T	0.00722	MSH6	+	FALSE
chr1	94352646	G	T	0.00645	GCLM	-	FALSE	AluSx1	SINE,Alu
chr1	10517352	T	C	0.00983		.	FALSE	AluJr	SINE,Alu
chr1	42886523	T	C	0.00649	RIMKLA	+	FALSE	MIRc	SINE,Alu
chr2	112252626	A	C	0.00048	MIR4435-2HG	-	FALSE
chr12	54634284	T	C	0.00247	CBX5	-	TRUE	AluJr	SINE,Alu
chr1	33149400	A	G	0.00407	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	185014720	A	G	0.00989	RNF2	+	FALSE
chr1	109855150	A	C	0.00251	SORT1	-	FALSE	A-rich	SINE,Alu
chr1	33149373	A	G	0.00239	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	25687901	T	C	0.00926	TMEM50A	+	FALSE
chr3	48787118	T	C	0.00248	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	144598755	G	A	0.00044	NBPF20	+	FALSE
chr16	5134599	G	C	0.00355	ALG1,EEF2KMT	+,-	FALSE
chr2	217366195	C	A	0.00929		.	FALSE
chr3	192515510	G	T	0.00559	MB21D2	-	FALSE
chr1	8412989	A	G	0.00190	RERE	-	FALSE
chr1	10520819	T	C	0.00022	DFFA	-	TRUE	AluSc8	SINE,Alu
chr14	53242746	T	C	0.00051	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr8	146035211	T	C	0.00116	ZNF517	+	FALSE	AluSx1	SINE,Alu
chr1	1252749	T	C	0.00875	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	12677547	G	A	0.00543	DHRS3	-	FALSE	(A)n	SINE,Alu
chr2	85132777	T	C	1.13350E-06	TMSB10	+	FALSE
chr3	179117128	T	C	0.00239	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	45476889	C	G	0.00969	HECTD3	-	FALSE
chr3	12940377	G	T	0.00878	IQSEC1	-	FALSE
chr2	160084473	A	C	0.00101	TANC1	+	FALSE
chr1	214527252	G	A	0.00181	PTPN14	-	FALSE	MADE2	SINE,Alu
chr1	150208462	A	C	9.89925E-05	ANP32E	-	FALSE
chr1	201846617	A	C	0.00380	IPO9	+	FALSE	(CA)n	SINE,Alu
chr3	158320703	C	A	0.00841	MLF1	+	FALSE
chr2	38975954	A	C	0.00381	SRSF7	-	FALSE
chr3	10290512	A	G	0.00289	TATDN2	+	FALSE
chr17	61909370	G	A	0.00152	PSMC5	+	FALSE
chr1	120163248	G	A	4.97770E-06	ZNF697	-	FALSE
chr4	109551183	T	A	0.00270	RPL34	+	FALSE
chr1	33148691	A	G	0.00032	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	146629399	G	T	0.00611	PRKAB2	-	FALSE
chr19	2426238	T	G	0.00129	TIMM13,TMPRSS9	+,-	FALSE
chr2	234386018	A	G	0.00299	USP40	-	FALSE
chr1	26449336	A	G	0.00343	PDIK1L	+	FALSE
chr2	38522141	G	T	0.00147	ATL2	-	FALSE
chr1	10519973	T	C	0.00745		.	FALSE	AluJr	SINE,Alu
chr17	40723650	A	T	0.00250	MLX	+	FALSE
chr1	9642827	G	A	0.00521	SLC25A33	+	FALSE
chr1	202993056	T	C	0.00046	TMEM183A	+	FALSE
chr2	172178680	T	C	9.91686E-05	METTL8	-	TRUE	AluSx3	SINE,Alu
chr2	84670484	T	C	0.00324	SUCLG1	-	TRUE
chr1	77759578	A	G	0.00492	AK5	+	FALSE
chr1	6282400	T	C	0.00385	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	19542354	T	C	0.00684	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr8	141530799	G	A	0.00525		.	FALSE
chr1	38158211	C	T	0.00113	CDCA8	+	FALSE
chr2	28639641	C	G	0.00431		.	FALSE
chr1	109746745	A	G	0.00073	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr3	42594019	C	T	3.51223E-05	SEC22C	-	FALSE
chr3	148748380	T	C	0.00240	HLTF	-	FALSE
chr5	37290504	T	C	0.00410		.	FALSE	AluSz	SINE,Alu
chr6	42855972	A	G	3.93003E-05	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	20519965	G	T	0.00011	UBXN10	+	FALSE
chr15	44751338	G	A	0.00374	CTDSPL2	+	FALSE
chr3	124948045	G	C	0.00784	ZNF148	-	FALSE
chr1	184661773	G	T	0.00082	EDEM3	-	FALSE
chr4	6304286	C	T	0.00054	WFS1	+	FALSE
chr15	63356574	G	A	0.00845	TPM1	+	FALSE
chr15	102516561	T	C	0.00805	WASH3P	+	FALSE
chr12	123253851	A	G	0.00470	DENR	+	FALSE	(AT)n	SINE,Alu
chr1	36531781	G	A	0.00288		.	FALSE
chr1	155695968	A	G	0.00017	DAP3	+	TRUE	AluSp	SINE,Alu
chr2	55516941	C	T	0.00110	CCDC88A	-	FALSE
chr1	21793735	C	G	0.00405	NBPF3	+	FALSE
chr6	13788297	T	C	0.00077	MCUR1	-	TRUE	AluSx	SINE,Alu
chr3	182639121	A	G	0.00048	ATP11B	+	FALSE
chr20	25427805	A	G	1.54320E-07	GINS1	+	TRUE	AluSz	SINE,Alu
chr1	9163465	T	C	0.00342		.	FALSE	AluSp	SINE,Alu
chr1	53289688	A	G	0.00731	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	93827991	A	C	0.00533	DR1	+	FALSE
chr5	37290413	T	C	0.00467		.	FALSE	AluSz	SINE,Alu
chr1	16890672	G	A	0.00142	NBPF1	-	FALSE
chr9	131093963	A	G	0.00299	COQ4	+	TRUE	AluJo	SINE,Alu
chr1	24289057	G	C	0.00044	PNRC2	+	FALSE
chr10	75008731	T	C	8.90942E-06	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr1	27992824	G	A	0.00503	IFI6	-	FALSE
chr12	98942904	A	G	0.00259	TMPO	+	TRUE	AluSc	SINE,Alu
chr20	25428587	A	G	0.00137	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	145512059	A	G	0.00053	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	28825419	A	G	0.00204	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr15	42859452	A	G	0.00123	HAUS2	+	TRUE	AluJb	SINE,Alu

RBP	HNRNPD
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR660MZN
Platform	HiSeq
Pubmed ID	32252787

HNRNPD - Target Gene Network