RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	53712569	C	A	0.00061	LRP8	-	FALSE	(CA)n	SINE,Alu
chr2	201774185	T	C	6.12175E-05		.	FALSE	AluSz	SINE,Alu
chr1	67874731	T	C	0.00145	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	10521260	T	C	0.00658	DFFA	-	TRUE	AluY	SINE,Alu
chr1	19543456	T	C	0.00386	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr8	144684474	T	C	0.00058		.	FALSE
chr1	95362514	G	T	7.06346E-05	CNN3	-	FALSE
chr2	37333924	T	C	0.00298	EIF2AK2	-	FALSE	AluSz	SINE,Alu
chr1	150548881	G	A	9.52924E-05	MCL1	-	FALSE
chr6	42857057	A	G	0.00020	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	23835794	A	G	0.00132	E2F2	-	FALSE
chr3	160219095	G	A	0.00620	KPNA4	-	FALSE	A-rich	SINE,Alu
chr1	113672634	A	G	0.00967		.	FALSE	AluJb	SINE,Alu
chr1	35648844	C	A	0.00313	SFPQ	-	FALSE	AluSx3	SINE,Alu
chr3	15113655	T	C	0.00025	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	9324670	A	G	0.00734	H6PD	+	FALSE
chr9	132573290	C	T	0.00881	TOR1B	+	FALSE
chr2	71214819	A	T	0.00346	TEX261	-	FALSE
chr12	125511404	A	G	0.00201	THRIL	-	FALSE	AluSx1	SINE,Alu
chr17	1683647	T	C	0.00763	SMYD4	-	TRUE	AluJb	SINE,Alu
chr1	227922767	G	T	0.00202	SNAP47,JMJD4	+,-	FALSE
chr6	42855182	A	G	0.00583	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	161488421	G	T	0.00588	FCGR2A	+	FALSE	AluSz6	SINE,Alu
chr1	6159719	C	T	4.79205E-09	KCNAB2	+	FALSE
chr1	104097685	C	T	0.00721	RNPC3,AMY2B	+	FALSE
chr1	156564726	T	C	0.00995	GPATCH4	-	FALSE
chr2	87820785	C	T	0.00110	LINC00152	+	FALSE
chr1	115119377	A	T	0.00157	BCAS2	-	FALSE
chr13	114748384	C	T	0.00050	RASA3	-	FALSE
chr1	21101368	T	C	0.00031	HP1BP3	-	TRUE	AluSc	SINE,Alu
chr7	100739267	G	A	0.00654		.	FALSE	AluSx	SINE,Alu
chr1	1477244	T	C	0.00365	SSU72	-	FALSE
chr2	85775237	T	C	6.42894E-05	GGCX	-	TRUE	AluSx4	SINE,Alu
chr1	45975345	A	G	0.00273	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr19	12742506	A	G	2.74962E-05		.	FALSE	AluSx	SINE,Alu
chr1	9160958	T	C	3.87385E-05		.	FALSE	AluJb	SINE,Alu
chr4	56282224	A	G	0.00485	TMEM165	+	TRUE	AluJb	SINE,Alu
chr14	69708241	G	A	0.00748	EXD2	+	FALSE
chr2	10580506	A	T	0.00294	ODC1	-	FALSE
chr2	174090636	T	A	0.00043	ZAK,MLK7-AS1	+,-	FALSE
chr1	15989141	C	G	0.00364		.	FALSE
chrX	123046306	A	G	0.00016	XIAP	+	TRUE	AluJb	SINE,Alu
chr1	144821986	C	T	0.00218	NBPF20,NBPF9	+	FALSE
chr1	10517314	T	C	0.00802		.	FALSE	AluJr	SINE,Alu
chr1	230416038	G	A	0.00626	GALNT2	+	FALSE
chr1	3545194	C	G	0.00254	TPRG1L	+	FALSE
chr1	1152310	C	T	0.00862	SDF4	-	FALSE
chr1	118167515	C	T	3.85037E-05	FAM46C	+	FALSE
chr1	10520331	C	T	0.00043		.	FALSE	AluSx1	SINE,Alu
chr1	214524556	T	C	0.00730	PTPN14	-	TRUE	AluSg	SINE,Alu
chr2	158169499	A	G	0.00119	GALNT5	+	FALSE
chr12	104186946	G	T	0.00523	NT5DC3	-	FALSE
chr12	69158881	A	G	0.00219	SLC35E3	+	TRUE	AluSp	SINE,Alu
chr1	9161366	T	C	0.00189		.	FALSE	AluSx	SINE,Alu
chr1	10520439	T	C	0.00293		.	FALSE	AluSx1	SINE,Alu
chr1	148023067	C	T	0.00772	NBPF8	-	FALSE
chr3	39438321	A	T	6.25124E-06	SLC25A38	+	FALSE
chr1	148556726	G	T	0.00758		.	FALSE
chr7	99636947	A	G	0.00851	ZKSCAN1	+	FALSE	AluSx1	SINE,Alu
chr1	207942472	A	G	0.00273	CD46	+	TRUE	AluSg4	SINE,Alu
chr4	2940347	T	C	0.00113	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr5	81571271	T	G	0.00827	RPS23	-	FALSE
chr3	180694878	A	T	0.00431	FXR1	+	FALSE	(T)n	SINE,Alu
chr1	26608016	G	A	1.44245E-06		.	FALSE
chr2	1637201	C	T	5.10703E-15	PXDN	-	FALSE
chr1	145293059	A	G	0.00063	NBPF20	+	FALSE
chr1	44463185	T	G	0.00969	SLC6A9	-	FALSE
chr5	37290323	T	C	0.00029		.	FALSE	AluSz	SINE,Alu
chr1	31342374	A	C	0.00446	SDC3	-	FALSE	(A)n	SINE,Alu
chr13	28240417	C	G	6.17934E-05	POLR1D	+	FALSE
chr1	115313028	T	A	0.00448	SIKE1	-	FALSE	AluSx1	SINE,Alu
chr1	40722795	G	A	9.35494E-07		.	FALSE	Charlie2a	SINE,Alu
chr1	114443606	A	G	0.00014	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	1419823	A	G	0.00816	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr5	151041876	G	T	5.29152E-05	SPARC	-	FALSE
chr1	33149266	A	G	0.00292	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	179045672	G	A	0.00411	FAM20B	+	FALSE
chr1	21940555	C	T	0.00067	RAP1GAP	-	FALSE
chr1	26604691	G	C	0.00043	CEP85	+	FALSE
chr2	242447628	T	G	0.00674	STK25	-	FALSE
chr10	75009781	T	C	9.15447E-06	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr7	20177519	T	C	0.00885	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr7	44917281	T	C	0.00222	PURB	-	TRUE	AluSz	SINE,Alu
chr1	149943157	G	A	0.00024	OTUD7B	-	FALSE
chr1	900721	T	C	0.00109	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr2	132275343	G	T	0.00334	LOC150776	+	FALSE
chr3	10192753	A	G	0.00069	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	10517527	T	C	0.00430		.	FALSE	AluSx1	SINE,Alu
chr1	116234313	A	G	0.00016	VANGL1	+	FALSE
chr1	92862836	A	G	0.00430		.	FALSE	AluJr	SINE,Alu
chr7	17384393	A	G	1.74996E-06	AHR	+	TRUE	AluSx	SINE,Alu
chr1	3545200	G	A	0.00381	TPRG1L	+	FALSE
chrX	77083941	T	C	0.00271	MAGT1	-	TRUE	AluSz	SINE,Alu
chr3	72426071	T	A	0.00169	RYBP	-	FALSE	(T)n	SINE,Alu
chr7	66421684	T	G	0.00042	TMEM248	+	FALSE	AluJr	SINE,Alu
chr1	24746451	A	G	0.00683	NIPAL3	+	TRUE	AluSc	SINE,Alu
chr1	32801694	A	C	0.00847	MARCKSL1	-	FALSE
chr5	56559238	T	C	0.00149	GPBP1	+	FALSE
chr9	21863618	T	C	0.00148	MTAP	+	FALSE	AluY	SINE,Alu
chr2	100019496	A	G	0.00789	REV1	-	FALSE
chr3	156258283	T	C	0.00686	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	6682037	G	A	0.00302	PHF13	+	FALSE
chr1	35644502	A	T	0.00702	SFPQ	-	FALSE	(A)n	SINE,Alu
chr3	195243007	A	C	3.91570E-06	PPP1R2	-	FALSE
chr5	130729522	T	G	0.00506	CDC42SE2	+	FALSE	(T)n	SINE,Alu
chr1	9328242	A	G	0.00116	H6PD	+	TRUE	AluJr	SINE,Alu
chr2	96573123	C	T	0.00413	ANKRD36C	-	FALSE
chr3	195395402	C	A	0.00066	SDHAP2	+	FALSE
chr2	201842323	T	C	0.00390	FAM126B	-	TRUE	AluJb	SINE,Alu
chr1	6282371	T	C	0.00054	ICMT	-	TRUE	AluSz	SINE,Alu
chr6	52269046	C	G	0.00338	PAQR8	+	FALSE
chr1	16890176	A	C	0.00753	NBPF1	-	FALSE
chr2	203430456	T	G	0.00162	BMPR2	+	FALSE
chr17	74556011	A	G	0.00819	SNHG16	+	TRUE	AluSq2	SINE,Alu
chr20	54963816	T	C	0.00750	AURKA	-	TRUE	AluSq10	SINE,Alu
chr4	190878580	A	G	0.00052	FRG1	+	FALSE
chr3	15094061	G	A	0.00188	MRPS25	-	FALSE
chr1	97144750	T	C	0.00262		.	FALSE
chr6	29857578	A	G	0.00280		.	FALSE
chr1	15993514	C	T	0.00802		.	FALSE	AluSx4	SINE,Alu
chr5	56177845	A	T	0.00420	MAP3K1	+	FALSE
chr1	89447720	G	A	0.00521	KYAT3,RBMXL1	-	FALSE
chr1	31192650	T	G	0.00727	MATN1,MATN1-AS1	+,-	FALSE
chr1	109239943	C	T	0.00722	PRPF38B	+	FALSE
chr18	10752666	C	T	1.68498E-05	PIEZO2	-	FALSE
chr14	75202704	A	G	2.33511E-06	FCF1	+	TRUE	AluSc	SINE,Alu
chr19	19791270	A	G	0.00732	ZNF101	+	TRUE	AluSq2	SINE,Alu
chr17	26672363	G	A	0.00599	TNFAIP1	+	FALSE
chr1	3745924	G	A	0.00612	CEP104	-	FALSE
chr1	100548868	T	C	0.00114	MFSD14A	+	FALSE
chr4	10076959	C	G	6.37978E-10	WDR1	-	FALSE
chr11	125526125	A	G	0.00374	CHEK1	+	TRUE	FRAM	SINE,Alu
chr2	27293352	A	T	0.00314	AGBL5,OST4	+,-	FALSE
chr1	10043416	G	A	0.00052	NMNAT1	+	FALSE	AluSx3	SINE,Alu
chr1	33148210	A	G	0.00342	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	53288897	A	G	0.00299	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	28662254	A	G	0.00052	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	36068370	T	C	0.00846	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	52378211	T	C	0.00195	RAB3B	-	TRUE	FLAM_C	SINE,Alu
chr14	67852040	A	G	4.57409E-05	EIF2S1	+	TRUE	AluJb	SINE,Alu
chr1	31732603	A	C	0.00164	SNRNP40	-	FALSE
chr1	100658578	G	A	0.00030	DBT	-	FALSE
chr1	67451522	A	T	0.00949	MIER1	+	FALSE
chr1	16061035	G	C	0.00089	PLEKHM2	+	FALSE
chr5	140564263	C	T	0.00475	PCDHB16	+	FALSE
chr8	128944721	G	T	0.00074	PVT1	+	FALSE
chr1	6283264	T	C	5.77123E-05	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	230979247	G	A	0.00137	C1orf198	-	FALSE
chr16	10623666	T	C	1.68352E-07	EMP2	-	TRUE	AluSp	SINE,Alu
chr2	196600548	G	T	0.00036	SLC39A10	+	FALSE
chr8	30536554	T	C	0.00023	GSR	-	TRUE	AluSp	SINE,Alu
chr15	59954723	T	A	0.00043	BNIP2	-	FALSE
chr1	53291435	A	G	0.00790	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	197125427	T	C	0.00331	ZBTB41	-	FALSE
chr2	27466552	G	C	0.00396	CAD	+	FALSE
chr5	122165503	A	T	0.00170	SNX2	+	FALSE	(AC)n	SINE,Alu
chr8	41401571	T	A	0.00240	LOC102723729,GINS4	+,-	FALSE
chr4	10442610	T	C	0.00174	ZNF518B	-	FALSE
chr4	17488286	T	G	0.00027	QDPR	-	FALSE
chr17	4928356	A	G	0.00048	KIF1C	+	TRUE	AluSz	SINE,Alu
chr3	148748197	T	A	0.00026	HLTF	-	FALSE
chr1	26673076	G	A	0.00465	AIM1L	-	FALSE
chr19	21907988	C	T	0.00295	ZNF100	-	FALSE
chr1	25894462	A	G	0.00101	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr2	26617209	A	G	5.06124E-05	EPT1	+	FALSE	AluSz	SINE,Alu
chr3	197612430	A	G	0.00095		.	FALSE	AluSp	SINE,Alu
chr5	125961210	A	G	0.00966	PHAX	+	TRUE	AluSz	SINE,Alu
chr3	100083427	T	A	0.00456	TOMM70	-	FALSE	FAM	SINE,Alu
chr1	16933642	G	A	0.00679	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	36770601	G	T	0.00055	THRAP3	+	FALSE	(T)n	SINE,Alu
chr5	79923424	T	C	0.00054	DHFR	-	TRUE	AluJr	SINE,Alu
chr1	200375846	G	T	0.00040	ZNF281	-	FALSE	(T)n	SINE,Alu
chr16	22297295	A	G	0.00749	EEF2K	+	TRUE	AluJr	SINE,Alu
chr2	69746296	C	T	0.00620	AAK1	-	FALSE
chr1	40214313	A	G	0.00330	PPIE	+	TRUE	AluSq2	SINE,Alu
chr1	43309548	G	A	0.00764	ERMAP	+	FALSE
chr1	205739266	C	T	0.00125	RAB29	-	FALSE
chr5	118175329	T	C	2.47285E-05	DTWD2	-	TRUE	AluJr	SINE,Alu
chr19	42753034	A	G	0.00883	ERF	-	FALSE
chr1	12073251	G	T	0.00957	MFN2	+	FALSE
chr6	44222157	G	A	0.00856	SLC35B2	-	FALSE
chr2	3502198	T	A	0.00764	ADI1	-	FALSE
chr1	40539202	G	A	0.00966	PPT1	-	FALSE
chr11	63394016	T	C	0.00106	ATL3	-	FALSE
chr1	156565049	A	C	0.00169	GPATCH4	-	FALSE
chr1	160966351	T	C	0.00034	F11R	-	TRUE	AluSg	SINE,Alu
chr1	45279898	C	T	0.00271		.	FALSE	(TCTT)n	SINE,Alu
chr4	13604418	G	C	2.95746E-07	BOD1L1	-	FALSE
chr1	93297595	G	T	0.00479	RPL5	+	FALSE
chr7	16899197	C	T	0.00926	AGR3	-	FALSE
chr5	125961166	A	G	0.00732	PHAX	+	TRUE	AluSz	SINE,Alu
chr8	17503270	G	C	0.00410	MTUS1	-	FALSE
chr1	31905884	G	A	2.48126E-05	SERINC2	+	FALSE
chr3	47554503	T	G	0.00720	ELP6	-	FALSE	AluSx	SINE,Alu
chr7	73150511	T	C	0.00414	ABHD11	-	FALSE
chr1	95362953	T	C	0.00072	CNN3	-	FALSE
chr1	28834154	G	T	0.00012	SNHG3,RCC1	+	FALSE	AluSg	SINE,Alu
chr2	24224040	A	G	0.00882		.	FALSE	AluSp	SINE,Alu
chr1	114515717	G	A	0.00018	HIPK1	+	FALSE
chr1	144822066	A	G	0.00020	NBPF20,NBPF9	+	FALSE
chr1	45279900	T	C	0.00073		.	FALSE	(TCTT)n	SINE,Alu
chr17	46024807	C	T	0.00295	PNPO	+	FALSE
chr13	25473685	C	T	0.00580	CENPJ	-	FALSE
chr1	118069696	T	C	0.00922		.	FALSE
chr1	155217438	A	T	0.00610	FAM189B	-	FALSE
chr6	150047370	T	C	0.00084	NUP43	-	TRUE	AluSc	SINE,Alu
chr19	9672979	T	C	0.00028		.	FALSE	AluSx3	SINE,Alu
chr1	162354203	A	G	0.00956	C1orf226	+	FALSE
chr16	66923393	A	G	0.00228	PDP2	+	TRUE	AluSz	SINE,Alu
chr13	99056476	A	T	0.00535	FARP1	+	FALSE
chr1	145513114	A	G	0.00026	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	210004199	C	G	0.00531	DIEXF	+	FALSE
chr2	120022385	C	T	0.00184	STEAP3	+	FALSE

RBP	HNRNPL
Knock-Method	shRNA
RBP Family	RRM_5
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR563YIS
Platform	HiSeq
Pubmed ID	32252787

HNRNPL - Target Gene Network