Dataset Overview
RBPETF1
Knock-MethodshRNA
RBP FamilyeRF1_2
Biosample NameHepG2
Tissue TypeLiver
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR840QOH
PlatformHiSeq
Pubmed ID32252787

ETF1 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of ETF1
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of ETF1


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr1900721TC0.00032KLHL17+FALSE(TTTA)nSINE,Alu
chr1100489996AG0.00069SLC35A3+TRUEAluSgSINE,Alu
chr228002599TA0.00566MRPL33+FALSE
chr1200375418CT0.00671ZNF281-FALSE
chr192862888AG0.00029.FALSEAluJrSINE,Alu
chr1424661017GT0.00771TM9SF1-FALSE
chr1736936846CT0.00277PIP4K2B-FALSE
chr12160436CT0.00488SKI+FALSE(CGC)nSINE,Alu
chr1269237020AG0.00150MDM2+TRUE
chr7920724AG0.00328GET4+TRUEAluSx1SINE,Alu
chr1958356540AG0.00019ZNF587B+TRUEAluSxSINE,Alu
chr119246181AG1.12993E-05IFFO2-FALSE
chr116909129TC0.00131NBPF1-FALSE
chr42940164TC2.22609E-06NOP14-AS1,NOP14+,-FALSEAluSpSINE,Alu
chr1153720690GA0.00550INTS3+FALSE
chr7100031502CT0.00091MEPCE+FALSE
chr1900719TA0.00436KLHL17+FALSE(TTTA)nSINE,Alu
chr145975358AG0.00339MMACHC+TRUEAluSg7SINE,Alu
chr19161668TC0.00456.FALSE
chr128825337AG0.00313PHACTR4+TRUEAluSgSINE,Alu
chr3172350135AT9.93187E-07NCEH1-FALSE
chr794297301GT0.00145PEG10+FALSE
chr1153920564AG0.00747CRTC2-FALSE
chr1061548852GA0.00693CCDC6-FALSE
chr5114541533TC0.00957.FALSEL1ME3ASINE,Alu
chr1656510334TC0.00494OGFOD1+FALSE
chr167874696TC0.00014SERBP1-TRUEAluSx3SINE,Alu
chr127434251GA0.00504SLC9A1-FALSE
chr116889639TC0.00745NBPF1-TRUE
chr1144594232CT2.29859E-05NBPF20+FALSE
chr2206988075GA0.00672NDUFS1-FALSE
chr579277952AC0.00041MTX3-FALSE(AC)nSINE,Alu
chr3196670098TC0.00019NCBP2-AS2+FALSE
chr1075008876TC0.00255DNAJC9-AS1,MRPS16+,-FALSEAluJrSINE,Alu
chr1590375419TC0.00521C15orf38-AP3S2,AP3S2-TRUEAluJrSINE,Alu
chr2025428617AG0.00622GINS1+FALSEAluJbSINE,Alu
chr543575009TC0.00498NNT-AS1-TRUEAluSq2SINE,Alu
chr42516790GT0.00141RNF4+FALSE
chr2200813126TC0.00713TYW5-FALSE
chr1244571947CT0.00775ADSS-FALSE
chr19645101CT0.00726.FALSE(ATATTC)nSINE,Alu
chr2132275396TC0.00348LOC150776+FALSE
chr153291382AG0.00132ZYG11B+TRUEAluJrSINE,Alu
chr5137354051CT0.00098FAM13B-FALSE
chr255462744CA0.00033RPS27A+FALSE
chr5177019207TG0.00584TMED9+FALSE
chr1206579798TC0.00476SRGAP2+FALSE
chr1202848587GA2.63176E-05RABIF-FALSE
chr116889985TC0.00778NBPF1-FALSE
chr1160967857TC0.00806F11R-TRUEAluSpSINE,Alu
chr6149915565AG0.00198RPS18P9+FALSE
chr1114306369AT0.00341RSBN1-FALSE
chr764441632AT0.00038ZNF117-FALSE
chr3176742501GA0.00707TBL1XR1-FALSE(A)nSINE,Alu
chr12117467580AG0.00064FBXW8+TRUEAluSzSINE,Alu
chr144072018CT0.00783PTPRF+FALSE
chr2132481470CT0.00594C2orf27A+FALSE
chr2137789499AG0.00889.FALSEAluJbSINE,Alu
chr856985607CT0.00085RPS20-FALSE
chr1180167090CT0.00607QSOX1+FALSE
chr417804279GA0.00606DCAF16-FALSE(A)nSINE,Alu
chr217836722TA0.00816VSNL1+FALSE
chr919376246AT0.00298.FALSE
chr1148010972AG0.00068NBPF8-FALSE
chr1773940888TC2.69053E-06ACOX1-TRUEAluSx1SINE,Alu
chr1148932848AG0.00496LOC645166+FALSE
chr5135392426TC8.62804E-07TGFBI+FALSE
chr16683561CG0.00732PHF13+FALSE
chr194982784TA0.00179ABCD3+FALSE
chr1110604747GA0.00101ALX3-FALSE
chr224225554AG0.00419.FALSEAluSq2SINE,Alu
chr12133298254AG1.64181E-10PGAM5+TRUEAluSpSINE,Alu
chr237330611TC0.00249.FALSEAluSq2SINE,Alu
chr1918476176AG0.00452PGPEP1+TRUEAluJbSINE,Alu
chr413583889TC2.08207E-10BOD1L1-FALSE
chr1204525649AG0.00191MDM4+TRUEAluSzSINE,Alu
chr1179829093TC0.00056TOR1AIP2-TRUEAluJrSINE,Alu
chr2170607000TA0.00590PHOSPHO2-KLHL23,KLHL23+FALSE
chr10102308801GC0.00127HIF1AN+FALSE(GT)nSINE,Alu
chr1298942886AG1.80851E-07TMPO+TRUEAluScSINE,Alu
chr1939433142TA0.00215FBXO17-FALSEAluJbSINE,Alu
chr1757281125AG0.00204PRR11+TRUEAluSzSINE,Alu
chr147099235AC0.00919.FALSE
chr125894460TA0.00520LDLRAP1+FALSEMIRbSINE,Alu
chr1347325380GA0.00270LRCH1+FALSE
chr642060429TC0.00017.FALSEAluSz6SINE,Alu
chr127202959TC0.00653.FALSEAluSq2SINE,Alu
chr2153506056TC0.00252FMNL2+FALSE
chr81730491AG5.38446E-06CLN8+TRUEAluSx1SINE,Alu
chr1100490275AG0.00142SLC35A3+TRUEAluSc5SINE,Alu
chr1118167515CT4.87028E-05FAM46C+FALSE
chr178142911TC0.00925ZZZ3-TRUEAluSxSINE,Alu
chr119543459TC0.00540LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr195362949AT0.00012CNN3-FALSE(A)nSINE,Alu
chr2208620143AG0.00605CCNYL1+TRUEEutTc1-N1SINE,Alu
chr373115786TC3.88619E-05PPP4R2+FALSE
chr135648710GC0.00377SFPQ-FALSE
chr116952896GA2.20079E-06CROCCP2-FALSE
chr1075009921TC0.00639DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr344791062TC0.00014KIAA1143-FALSE
chr12104186946GT0.00523NT5DC3-FALSE
chr312625747GA0.00067RAF1-FALSE
chr1182568729CG0.00012RGS16-FALSE
chr274442548CT0.00721.FALSE
chr314239845GA0.00375LSM3+FALSE
chr1145100772AG0.00945NBPF20,SEC22B+TRUEAluSg4SINE,Alu
chr1228520973CG0.00875OBSCN+FALSE
chr11595500TC0.00482CDK11B,SLC35E2B-TRUEAluJrSINE,Alu
chr312942851CG0.00013IQSEC1-FALSE
chr315112510TC0.00710RBSN-FALSEAluSq2SINE,Alu
chr5176863519GC0.00567GRK6+FALSE
chr1151966348CT0.00511S100A10-FALSE
chr1120612194CG0.00091NOTCH2-FALSE(CCG)nSINE,Alu
chr310193796AG0.00291VHL+TRUEAluSxSINE,Alu
chr23622912GT0.00000RPS7+FALSE
chr791742142CA0.00478CYP51A1-FALSEAluSx3SINE,Alu
chr2114718893CG0.00631ACTR3+FALSE
chr56491892GA0.00707UBE2QL1+FALSE
chr6160526910AT0.00672IGF2R+FALSE
chr345267321CT0.00059TMEM158-FALSE
chr119665566AC0.00028CAPZB-FALSE
chr123636031TA0.00965HNRNPR-FALSE
chr732529936GC0.00027LSM5-FALSE
chr1144851999AC0.00385NBPF20,PDE4DIP+,-FALSE
chr12161135AG0.00028SKI+FALSE
chr2174090630CA0.00025ZAK,MLK7-AS1+,-FALSE
chr1709591GA0.00226LOC100288069-FALSE
chr417633798AG0.00053FAM184B-FALSEAluSzSINE,Alu
chr315114318TC0.00067RBSN-TRUEAluYSINE,Alu
chr933039686GA0.00542DNAJA1+FALSE
chr10101992793TC0.00407CWF19L1-TRUEAluJbSINE,Alu
chr116889575TC0.00467NBPF1-TRUE
chr543700242AG0.00932NNT+FALSE
chr1047098568CT0.00178LINC00842-FALSE
chr342594019CT3.51223E-05SEC22C-FALSE
chr12131356731TC2.96756E-07RAN+FALSE(GGCCGG)nSINE,Alu
chr2198255334AT0.00551.FALSE
chr136755235AG0.00562THRAP3+FALSE
chr1201434740GA0.00471PHLDA3-FALSE
chr1142688707AC0.00504.FALSE
chr178187733GA0.00388USP33-FALSE
chr1101372409TC0.00203SLC30A7+FALSE
chr2128601426TC0.00034.FALSEAluJrSINE,Alu
chr4120979190TC0.00970.FALSEAluSg4SINE,Alu
chr1204393480TA0.00783PIK3C2B-FALSE
chr127250642AG0.00020NUDC+FALSE
chr76501831TA0.00170KDELR2-FALSE
chr6132617374CG0.00062MOXD1-FALSE
chr4144442611TC0.00899SMARCA5+FALSE
chr626411987TC0.00405BTN3A1+FALSE
chr495586725TA0.00743PDLIM5+FALSE
chr1109884775TG0.00026SORT1-FALSE
chr755433880GC0.00778LANCL2+FALSE
chr133150598TC4.12722E-05SYNC,RBBP4+,-FALSE
chr2101622881CA1.48865E-05RPL31+FALSE
chr310192816AG0.00010VHL+TRUEAluSx1SINE,Alu
chr13729587AG0.00580CEP104-FALSE(AT)nSINE,Alu
chr315113885TC0.00094RBSN-TRUEAluSz6SINE,Alu
chr154692334TC5.22151E-05SSBP3-FALSE(T)nSINE,Alu
chr416040617CT0.00032PROM1-FALSE
chr1148556784GA0.00100.FALSE
chr3120113286CT1.47726E-06FSTL1-FALSE
chr1955597GT3.81431E-06AGRN+FALSE
chr556177872AG0.00618MAP3K1+TRUE(CAA)nSINE,Alu
chr1743471481GA0.00412.FALSE
chr12133298025AG6.18330E-06PGAM5+TRUEAluJoSINE,Alu
chr674134823TC0.00305.FALSEAluSzSINE,Alu
chr132661600CT0.00235TXLNA+FALSE(T)nSINE,Alu
chr1109475572AG0.00096GPSM2,CLCC1+,-FALSEAluJoSINE,Alu
chr722981942GA0.00041FAM126A-FALSE
chrX3523061CG0.00023PRKX-FALSE(AC)nSINE,Alu
chr339453160GA0.00000RPSA+FALSE
chr189479063GA0.00076GBP3-FALSE
chr679595097AG0.00712IRAK1BP1+FALSE
chr1230416038GA0.00626GALNT2+FALSE
chr3176739580TC4.09936E-06TBL1XR1-FALSE
chr152520866CT0.00195TXNDC12-FALSE
chr1155851620AG0.00066SYT11+TRUEAluSq2SINE,Alu
chr7127947979TC0.00257.FALSEAluJrSINE,Alu
chr812880299AG1.70760E-05KIAA1456+TRUEAluJoSINE,Alu
chr136067833TC3.75622E-05PSMB2-TRUEAluSzSINE,Alu
chr170718276GT0.00836.FALSE
chr110003320GA0.00168LZIC,NMNAT1+,-FALSE
chr133960062AG0.00437ZSCAN20+FALSE
chr121810693AG0.00370NBPF3+FALSEL1MC4SINE,Alu
chr110519946TC0.00080.FALSEAluJrSINE,Alu
chr1203277242TC0.00023BTG2+FALSE
chr1145442111CA0.00090NBPF20,NBPF10,TXNIP+FALSE
chr780373463AC0.00399SEMA3C-FALSE
chr1207942472AG0.00273CD46+TRUEAluSg4SINE,Alu
chr1226589958GA0.00613PARP1-FALSE
chr112628188TC6.05765E-06DHRS3-FALSE
chr153291395AG0.00017ZYG11B+TRUEAluJrSINE,Alu
chr348787052TC0.00866PRKAR2A-TRUEAluSx3SINE,Alu
chr1144931101GA0.00012NBPF20,PDE4DIP+,-FALSE
chr425236017TC2.76644E-09PI4K2B+FALSE
chr1564455123GT1.10189E-06PPIB-FALSE
chr3119545349TC0.00805GSK3B-FALSE
chr232535873AG0.00270.FALSEAluJbSINE,Alu
chr1145512123AG3.10159E-05NBPF20,NBPF10,RBM8A,GNRHR2+,-FALSEAluYSINE,Alu
chr135649749CA0.00597SFPQ-FALSE
chr128661657AG0.00910MED18+TRUEAluSgSINE,Alu
chr7128142833AG6.82570E-05METTL2B+TRUEAluSx1SINE,Alu
chr19161357TC0.00739.FALSEAluSxSINE,Alu
chr1111489899CA0.00041LRIF1-FALSE
chr273460314CT0.00333PRADC1-FALSE(CGGCGC)nSINE,Alu
chr3196660344TA0.00366SENP5+FALSE
chr6143661166AC0.00536AIG1+FALSE
chr9136335345GA0.00490CACFD1+FALSE(TG)nSINE,Alu
chr192975244TA0.00220EVI5-FALSE
chr1244869241CA0.00213DESI2+FALSE
chr199672346TC0.00222.FALSEAluJrSINE,Alu
chr633269307TC0.00645.FALSEAluSxSINE,Alu
chr6158093827CT0.00201ZDHHC14+FALSE
chr1559954723TA0.00043BNIP2-FALSE
chr9125887702CT0.00019STRBP-FALSE
chr1574210428GA0.00784LOXL1-AS1-FALSEL2aSINE,Alu
chr5122165482CT0.00367SNX2+FALSE(AC)nSINE,Alu
chr18931947TC0.00059ENO1-FALSE
chr119586501AG0.00288MRTO4+TRUEAluSzSINE,Alu
chr2216300795CG0.00641.FALSE
chr2113334241AG0.00388POLR1B+TRUE
chr128859267AC2.52971E-07RCC1+FALSE
chr1749041692TC2.35976E-05SPAG9-TRUEAluSxSINE,Alu
chr3124950421TA0.00713ZNF148-FALSE
chr1120695749AG0.00130.FALSE
chr125889571GA0.00344LDLRAP1+FALSE
chr145279813TC0.00614.FALSE(TCTT)nSINE,Alu
chr125894464GA0.00527LDLRAP1+FALSEMIRbSINE,Alu
chr1589739348AG0.00035ABHD2+FALSEMER5ASINE,Alu
chr1227847344TC0.00205ZNF678+FALSE
chr119586135CT0.00063MRTO4+FALSE
chr5125961447AG0.00242PHAX+TRUEAluSz6SINE,Alu
chr11656557TC0.00061SLC35E2-TRUEAluSzSINE,Alu
chr1110566210TA0.00832AHCYL1+FALSE
chr190152146CT1.61967E-05LRRC8C+FALSE
chr1179044239AG0.00143FAM20B+TRUEAluSxSINE,Alu
chr1161931167AG0.00251ATF6+FALSE
chr265496187GA0.00103ACTR2+FALSE
chr324163645CG1.00972E-05THRB-FALSE
chr101086810TA0.00245IDI2-AS1,IDI1+,-FALSE
chr193827764AG0.00098DR1+FALSE
chr5151041888TG0.00636SPARC-FALSE
chr410443062TG0.00303ZNF518B-FALSE
chr19328106AG0.00394H6PD+TRUEAluJrSINE,Alu
chr146774813CG0.00766UQCRH+FALSE
chr729961884CG0.00024SCRN1-FALSE
chr7137561083TC0.00194CREB3L2-FALSE(GT)nSINE,Alu
chr110364612AC0.00860KIF1B+FALSE
chr193297595GT0.00479RPL5+FALSE
chr6160100931TC0.00215SOD2-TRUEAluSzSINE,Alu
chr310168785TC0.00198BRK1+FALSE
chr1114940211GT8.00129E-05TRIM33-FALSE(T)nSINE,Alu
chr145244419TA0.00027.FALSE
chr13545191CT0.00597TPRG1L+FALSE
chr110367424GA0.00286KIF1B+FALSEAluSxSINE,Alu
chr112164538GA8.95385E-07TNFRSF8+FALSE
chr110520117TC0.00999.FALSEAluSxSINE,Alu
chr6143382538AT0.00145AIG1+FALSE
chr153712727CT0.00313LRP8-FALSE
chr2036147563TC0.00313BLCAP-TRUE
chr1423795204GT0.00938BCL2L2-PABPN1,PABPN1+FALSE
chr187573325CT0.00121HS2ST1+FALSE(AT)nSINE,Alu
chr447514685CT2.65771E-05ATP10D+FALSE
chr42940477TC1.61307E-05NOP14-AS1,NOP14+,-FALSEAluJoSINE,Alu
chr170904800GT0.00678CTH+FALSE
chr3196659892TG0.00620SENP5+FALSEAluSzSINE,Alu
chr8117784431TA0.00422UTP23+FALSEAluSz6SINE,Alu
chr1065382718GA0.00984REEP3+FALSEAluScSINE,Alu
chr315113694TC0.00622RBSN-TRUEAluSz6SINE,Alu
chr1193054576TC0.00068TROVE2+FALSE(ATTTT)nSINE,Alu
chr153288894AG0.00066ZYG11B+TRUEAluJoSINE,Alu
chr631112484CT0.00538.FALSE
chr119542456TC0.00135LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr1667715890TC9.92672E-05GFOD2-TRUEAluJrSINE,Alu
chr11337736CG0.00012MRPL20-FALSE
chr151434560GA0.00685CDKN2C+FALSE
chr2204162036AG0.00369CYP20A1+TRUEAluSxSINE,Alu
chr1117945040GA0.00181MAN1A2+FALSE
chr124296874GA0.00627.FALSEAluSgSINE,Alu
chr1153609268GA0.00263CHTOP+FALSE
chr1327538AG0.00010.FALSE
chr1563445744AT0.00539RPS27L-FALSE
chr1149818441TC0.00773.FALSEMLT1DSINE,Alu
chr1201846675CT0.00145IPO9+FALSE
chr349397323TC0.00000RHOA-TRUE
chr568936027GA0.00868.FALSE
chr3122447574AC0.00224PARP14+FALSE
chr1075009720TC0.00016DNAJC9-AS1,MRPS16+,-FALSEAluYSINE,Alu
chr8104343686GA0.00031FZD6+FALSE
chrX118672641TC0.00027CXorf56-TRUEAluSxSINE,Alu
chr119586501AG0.00019MRTO4+TRUEAluSzSINE,Alu
chr2220406239TG0.00035CHPF-FALSEMIRbSINE,Alu
chr13654747CA0.00691TP73-AS1-FALSE
chr5135391374CT3.54402E-06TGFBI+FALSE
chr119441410GA7.84348E-05UBR4-FALSE
chr349067809TA0.00022QRICH1-FALSE
chr165297861TC0.00895RAVER2+FALSE
chr237331125TC0.00036.FALSEAluSx1SINE,Alu
chrX23721458TA0.00413.FALSEAluSc8SINE,Alu
chr1155403823AG0.00850ASH1L,POU5F1P4+,-FALSE
chr631378387TC0.00207.FALSE
chr128859265CG0.00030RCC1+FALSE
chr5125961534AG0.00233PHAX+TRUEAluSz6SINE,Alu
chr1757279167AG0.00071PRR11+TRUEAluSq2SINE,Alu
chr3136573440AG0.00038NCK1-AS1,SLC35G2+,-FALSE
chr110520725TC0.00795DFFA-TRUEAluSc8SINE,Alu
chr119543356TC0.00256LOC101927895,EMC1+,-FALSEAluJbSINE,Alu
chr110517564TC0.00371.FALSEAluSx1SINE,Alu
chr5147650355AC0.00222LOC102546294,SPINK13+,-FALSEMLT1DSINE,Alu
chr7128294489GT0.00354LINC01000+FALSE
chr2218572730AG6.64824E-05PEX26+TRUEAluYf1SINE,Alu
chr479832870AT0.00655BMP2K+FALSE
chr19161142TC0.00160.FALSEAluSxSINE,Alu
chr629910557TA0.00196.FALSE
chr8117858600TA0.00015RAD21-FALSE
chr16582689TC4.44823E-05NOL9-TRUEAluSgSINE,Alu
chr1158067060TA0.00778KIRREL+FALSE
chr23609064GA0.00212RNASEH1-AS1+FALSEMER33SINE,Alu
chr1156692049AT6.25184E-05ISG20L2-FALSE
chr362189465CT2.69664E-05PTPRG+FALSE
chr171946503CG0.00154DPH1,OVCA2+FALSE

Differential Expression Gene Analysis