RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	10520588	T	C	0.00341		.	FALSE	AluSc8	SINE,Alu
chr6	143382534	C	T	0.00252	AIG1	+	FALSE
chrX	77084017	T	C	0.00179	MAGT1	-	TRUE	AluSz	SINE,Alu
chr9	115446659	T	C	0.00410	INIP	-	TRUE	AluJr	SINE,Alu
chr1	62673225	G	A	0.00039	L1TD1	+	FALSE	L1MEd	SINE,Alu
chr1	6283296	T	C	0.00106	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	150969257	T	C	0.00400		.	FALSE	AluSq2	SINE,Alu
chr2	61416411	T	G	0.00146	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	163288931	G	A	0.00284	RGS5	-	FALSE	MamRep1527	SINE,Alu
chr6	150045926	T	C	0.00053	NUP43	-	TRUE	AluSq	SINE,Alu
chr1	20977380	T	C	0.00695	PINK1,PINK1-AS	+,-	FALSE
chr1	71532815	G	A	0.00712	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr1	19543456	T	C	0.00386	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	26774225	A	G	0.00614	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr12	44182706	A	G	0.00788	IRAK4	+	FALSE	MSTB-int	SINE,Alu
chr9	124095000	T	G	0.00764	GSN	+	FALSE	(TG)n	SINE,Alu
chr1	68940566	A	C	0.00126	DEPDC1	-	FALSE
chr9	125866693	C	T	0.00255	RABGAP1	+	FALSE
chr7	27237453	C	T	0.00421	HOXA13	-	FALSE
chr1	173457945	G	A	0.00287	PRDX6	+	FALSE
chr1	186370281	C	G	0.00387	C1orf27,OCLM	+	FALSE
chr8	42043493	G	A	0.00045	PLAT	-	FALSE	MLT2C1	SINE,Alu
chr1	9642827	G	A	0.00521	SLC25A33	+	FALSE
chr1	16946266	G	C	0.00750	CROCCP2	-	FALSE	MIRb	SINE,Alu
chr3	105271344	A	G	0.00460	ALCAM	+	FALSE
chr1	10518826	T	C	0.00292		.	FALSE	AluSx1	SINE,Alu
chr3	98516118	T	A	0.00541	DCBLD2	-	FALSE
chr1	161929879	A	T	0.00680	ATF6	+	FALSE
chr6	31323203	A	G	2.54151E-09		.	FALSE
chr1	32661578	C	T	0.00694	TXLNA	+	FALSE	(T)n	SINE,Alu
chr4	77996987	T	C	0.00240	CCNI	-	FALSE
chr1	17345246	A	T	0.00812	SDHB	-	FALSE
chr1	40219065	C	T	0.00232	PPIE	+	FALSE
chr1	9161137	T	C	0.00087		.	FALSE	AluSx	SINE,Alu
chr4	25236017	T	C	2.76644E-09	PI4K2B	+	FALSE
chr1	92862826	A	G	0.00100		.	FALSE	AluJr	SINE,Alu
chr17	65335253	T	C	0.00344	PSMD12	-	TRUE	AluSx	SINE,Alu
chr17	29578724	C	T	0.00514	NF1	+	FALSE
chr21	34728099	A	G	1.57787E-05	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr5	130537747	A	G	1.40133E-05	LYRM7	+	TRUE	AluJb	SINE,Alu
chr1	145512024	A	G	0.00247	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr16	88789703	C	G	0.00498	PIEZO1	-	FALSE
chr1	16576836	A	G	0.00885	FBXO42	-	FALSE
chr1	10517688	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr8	30536146	T	C	1.15312E-06	GSR	-	TRUE	AluJr	SINE,Alu
chr4	17802783	T	C	6.83941E-07	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	326539	A	G	0.00719		.	FALSE
chr6	32800221	C	T	0.00900		.	FALSE	(GCATCA)n	SINE,Alu
chr4	248840	A	G	0.00655	ZNF876P	+	TRUE	AluYk3	SINE,Alu
chr3	191111160	A	G	4.43846E-07	CCDC50	+	FALSE
chr16	66923452	A	G	0.00065	PDP2	+	TRUE	AluSz	SINE,Alu
chr1	21793735	C	G	0.00405	NBPF3	+	FALSE
chr7	149318375	C	T	0.00383	ZNF767P	-	FALSE
chr1	197070776	C	T	0.00698	ASPM	-	FALSE
chr6	160526904	T	G	0.00027	IGF2R	+	FALSE
chr6	74303531	T	C	0.00487	SLC17A5	-	TRUE	AluJr	SINE,Alu
chr9	133778117	C	T	0.00739	FIBCD1	-	FALSE
chr1	100615003	G	A	0.00046	TRMT13,LRRC39	+,-	FALSE
chr1	97144886	A	G	0.00078		.	FALSE
chr1	2115914	G	T	0.00970	PRKCZ,FAAP20	+,-	FALSE
chr1	19953124	G	A	0.00137	MINOS1,MINOS1-NBL1	+	FALSE
chr1	118502087	C	T	0.00585	WDR3,SPAG17	+,-	FALSE
chr6	138412313	A	G	0.00092	PERP	-	FALSE
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr1	9162348	T	C	0.00359		.	FALSE	AluSx	SINE,Alu
chr17	49041897	T	C	4.67707E-06	SPAG9	-	TRUE	AluSx	SINE,Alu
chr1	16892913	A	G	0.00441	NBPF1	-	FALSE
chr6	24719404	C	A	0.00024		.	FALSE
chr1	6283264	T	C	0.00479	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	156259348	G	A	0.00899	SSR3	-	FALSE	AluSq2	SINE,Alu
chr1	9324213	C	T	0.00063	H6PD	+	FALSE
chr4	38945834	T	C	0.00287	FAM114A1	+	FALSE	AluSc	SINE,Alu
chr1	145688943	A	G	0.00492	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	54691921	G	A	0.00909	SSBP3	-	FALSE
chr1	16913677	T	C	0.00638	NBPF1	-	FALSE
chr1	10520383	T	C	0.00401		.	FALSE	AluSx1	SINE,Alu
chr1	32799437	C	T	0.00318	MARCKSL1	-	FALSE
chr1	10520702	T	C	0.00883	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	144828765	A	T	0.00976	NBPF20,NBPF9	+	FALSE
chr12	125514122	A	G	1.22592E-05		.	FALSE	(TA)n	SINE,Alu
chrX	3523048	A	T	0.00055	PRKX	-	FALSE
chr10	13320123	C	A	0.00830	PHYH	-	FALSE
chr1	109818158	C	T	0.00628	CELSR2	+	FALSE
chr1	3545192	C	G	0.00332	TPRG1L	+	FALSE
chr1	143135166	G	T	0.00325	LOC102723769	-	FALSE
chr3	40577745	A	G	0.00044	ZNF621	+	TRUE	AluSz	SINE,Alu
chr12	69237509	A	G	1.55617E-05	MDM2	+	TRUE
chr5	81571876	A	T	0.00013	RPS23	-	FALSE
chr2	197004439	A	G	0.00034	STK17B	-	FALSE
chr10	51374391	C	G	0.00028	TIMM23B	+	FALSE
chr2	203745105	T	C	0.00644		.	FALSE	AluSx	SINE,Alu
chr2	171699153	C	G	0.00247	GAD1	+	FALSE
chr1	145688665	T	A	0.00015	NBPF20,NBPF10,RNF115	+	FALSE
chr1	41236854	T	A	0.00075	NFYC	+	FALSE	(T)n	SINE,Alu
chr1	93308173	T	G	0.00380	FAM69A	-	FALSE
chr1	27426756	A	G	0.00384	SLC9A1	-	FALSE
chr1	26801731	G	T	0.00325	HMGN2	+	FALSE	(T)n	SINE,Alu
chr6	42856156	A	G	0.00105	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	24225013	A	G	0.00103		.	FALSE	AluSx	SINE,Alu
chr15	41590288	G	T	0.00349	OIP5-AS1	+	FALSE
chr3	196044972	C	T	0.00258	TCTEX1D2,TM4SF19-TCTEX1D2	-	FALSE
chr1	115119377	A	T	0.00157	BCAS2	-	FALSE
chr11	19245854	T	C	0.00078	E2F8	-	FALSE
chr1	10517290	T	C	0.00060		.	FALSE	AluJr	SINE,Alu
chr7	65844562	T	C	0.00695	LINC00174	-	FALSE
chr1	224380498	A	G	6.58460E-05	DEGS1	+	TRUE	AluSx	SINE,Alu
chr4	17803009	T	C	0.00062	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	26131654	G	A	0.00149	SEPN1	+	FALSE
chr2	74334790	A	G	0.00870	TET3	+	FALSE
chr5	64964627	T	C	0.00998	SGTB	-	TRUE	AluSx1	SINE,Alu
chr1	24786	G	A	0.00285	WASH7P	-	FALSE
chr14	50361170	C	T	0.00096	ARF6	+	FALSE	(T)n	SINE,Alu
chr6	33648144	C	T	0.00453	ITPR3	+	FALSE
chr5	139931633	C	A	0.00014	SRA1	-	FALSE
chr3	10285030	G	A	0.00384	IRAK2	+	FALSE
chr2	204312707	C	T	0.00154	RAPH1	-	FALSE
chr1	118069696	T	C	0.00922		.	FALSE
chr1	206566195	C	T	0.00052	SRGAP2	+	FALSE
chr1	10518591	A	T	0.00169		.	FALSE
chr1	67895926	A	G	0.00705	SERBP1	-	FALSE
chr16	58054472	T	C	0.00530	USB1	+	FALSE
chr3	192515510	G	T	0.00559	MB21D2	-	FALSE
chr10	120920588	T	C	0.00304	SFXN4	-	FALSE
chr1	202697335	G	A	0.00374	KDM5B	-	FALSE
chr15	42503336	C	T	0.00916	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr3	48787757	T	C	0.00605	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr22	39259541	A	G	0.00134	CBX6	-	FALSE
chr2	85824712	C	A	0.00663	RNF181	+	FALSE
chr1	3545189	T	G	0.00027	TPRG1L	+	FALSE
chr1	16889127	A	G	0.00213	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr2	135208352	T	G	0.00259	MGAT5	+	FALSE
chr2	75882576	T	C	0.00328	MRPL19	+	FALSE
chr9	139100154	C	G	0.00464	QSOX2	-	FALSE
chr1	1325721	C	T	0.00471	CCNL2	-	FALSE
chr1	161088583	T	G	0.00822	NIT1	+	FALSE
chr5	79923793	T	C	0.00664	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	6282361	T	C	0.00634	ICMT	-	TRUE	AluSz	SINE,Alu
chr18	2804129	G	A	0.00157	SMCHD1	+	FALSE
chr3	58292297	T	C	0.00950	RPP14	+	FALSE
chr1	11979809	A	C	0.00836	KIAA2013	-	FALSE
chr1	1595586	T	C	0.00206	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr3	121351277	A	T	0.00388	HCLS1	-	FALSE
chr3	44791355	T	C	0.00468	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr7	6501829	T	A	0.00081	KDELR2	-	FALSE
chr19	7085418	A	G	6.02730E-06	ZNF557	+	TRUE	AluJb	SINE,Alu
chr2	28002603	C	A	0.00010	MRPL33	+	FALSE
chr1	16841620	T	A	0.00023		.	FALSE
chr1	90496713	A	G	0.00677	ZNF326	+	FALSE
chr1	32374019	G	A	0.00297	PTP4A2	-	FALSE
chr3	49395692	G	A	0.00049	GPX1	-	FALSE	(GCC)n	SINE,Alu
chr6	32796463	A	C	0.00680		.	FALSE	(CCCCA)n	SINE,Alu
chrX	16781186	A	G	0.00220		.	FALSE	AluJo	SINE,Alu
chr1	53289860	A	G	0.00346	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr2	32535747	A	G	0.00250		.	FALSE	AluJb	SINE,Alu
chr1	11084345	C	T	0.00558	TARDBP	+	FALSE
chr2	232319583	C	A	0.00801	NCL	-	FALSE	A-rich	SINE,Alu
chr1	212273639	C	T	0.00710	DTL	+	FALSE
chr2	136541076	C	A	0.00211	UBXN4	+	FALSE
chr10	126677249	A	T	0.00762	CTBP2	-	FALSE
chr1	154557171	G	A	0.00045	ADAR	-	FALSE	A-rich	SINE,Alu
chr1	161931167	A	G	0.00251	ATF6	+	FALSE
chr1	120162787	T	C	0.00925	ZNF697	-	FALSE
chr1	211921422	T	G	0.00686	LPGAT1	-	FALSE
chr2	37328034	T	C	8.99638E-05		.	FALSE
chr1	1653046	T	A	0.00686	CDK11B,CDK11A	-	FALSE
chr1	28835937	A	G	0.00121	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	145689566	A	G	0.00331	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr20	43996145	T	A	0.00611	SYS1-DBNDD2,SYS1	+	FALSE
chr1	24935369	A	G	0.00454	NCMAP	+	TRUE	AluJb	SINE,Alu
chr1	6659505	G	A	0.00405	KLHL21	-	FALSE
chr2	220370192	C	T	0.00055	GMPPA	+	FALSE
chr2	130900880	C	T	0.00044	CCDC74B	-	FALSE
chr4	128758175	A	G	0.00385		.	FALSE	AluSx	SINE,Alu
chr10	89623858	G	C	0.00086	PTEN	+	FALSE	(CGG)n	SINE,Alu
chr2	61705068	A	T	0.00103		.	FALSE
chr1	26802401	T	G	4.43852E-05	HMGN2	+	FALSE
chr1	53290298	A	G	0.00063	ZYG11B	+	TRUE	AluSg4	SINE,Alu
chr1	52306079	T	A	0.00606	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr12	69237056	A	G	0.00372	MDM2	+	TRUE
chr6	111588769	A	G	2.24603E-05	MFSD4B	+	TRUE	AluYm1	SINE,Alu
chr5	170832637	C	T	0.00071	NPM1	+	FALSE
chr8	128944720	G	T	0.00751	PVT1	+	FALSE
chr7	55433884	A	C	0.00723	LANCL2	+	FALSE
chr1	10518688	T	C	0.00154		.	FALSE	AluSx1	SINE,Alu
chr1	145283980	C	T	0.00113	NBPF20,NOTCH2NL	+	FALSE
chr1	100658578	G	A	5.62742E-07	DBT	-	FALSE
chr1	113240711	G	A	0.00454	MOV10	+	FALSE
chr6	34231301	G	C	0.00772		.	FALSE
chr2	47562582	G	A	0.00484	LOC101927043	-	FALSE	BC200	SINE,Alu
chr5	125961554	A	G	0.00355	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	65330637	C	T	0.00251	JAK1	-	FALSE
chr1	53288916	A	G	0.00289	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr16	80636808	C	T	0.00881	CDYL2	-	FALSE
chr3	42610515	G	A	0.00099	SEC22C	-	FALSE
chr3	53268235	A	C	0.00452	TKT	-	FALSE
chr5	65453894	T	A	0.00211	SREK1	+	FALSE
chr3	56703746	A	C	0.00017	FAM208A	-	FALSE
chr1	38326643	T	C	0.00458	INPP5B	-	TRUE	AluJr	SINE,Alu
chr2	11053740	C	T	0.00402	KCNF1	+	FALSE
chr1	214529170	T	C	0.00120	PTPN14	-	TRUE
chr1	53680205	C	T	4.54902E-05	C1orf123	-	FALSE
chr1	197070442	G	T	0.00468	ASPM	-	FALSE
chr1	148556784	G	A	0.00543		.	FALSE
chr1	33148196	A	G	0.00303	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr7	64441627	G	A	0.00478	ZNF117	-	FALSE
chr5	37290336	T	C	0.00036		.	FALSE	AluSz	SINE,Alu
chr7	154796171	G	A	0.00066	PAXIP1-AS1	+	FALSE	AluSx3	SINE,Alu
chr1	179045500	C	A	0.00043	FAM20B	+	FALSE
chr2	38971059	A	C	0.00539	SRSF7	-	FALSE
chr1	201846618	C	A	0.00404	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	11347155	C	T	0.00366	UBIAD1	+	FALSE
chr3	10005650	C	T	0.00698	EMC3	-	FALSE
chr1	20977599	C	G	0.00489	PINK1,PINK1-AS	+,-	FALSE
chr1	183515428	G	A	0.00232	SMG7	+	FALSE
chr3	156258319	T	C	0.00012	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	8412989	A	G	0.00225	RERE	-	FALSE
chr6	13790964	T	C	5.10728E-05	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr2	158170017	T	C	0.00662	GALNT5	+	FALSE
chr2	73480136	T	A	0.00281	CCT7	+	FALSE
chr1	145369709	A	G	0.00607	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	20976163	C	T	0.00091	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr2	239973454	T	C	0.00091	HDAC4	-	FALSE
chrX	77083939	T	C	5.71267E-05	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	117945049	G	A	0.00120	MAN1A2	+	FALSE
chr1	52306087	C	T	0.00022	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	10520154	T	C	0.00021		.	FALSE	AluSx	SINE,Alu
chr10	75009720	T	C	0.00016	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr5	40832549	C	T	2.26031E-05	RPL37	-	FALSE
chr13	31033325	C	A	0.00792	HMGB1	-	FALSE
chr15	89803950	C	T	0.00698	FANCI	+	FALSE
chr3	45126558	C	T	0.00000	CDCP1	-	FALSE
chr1	153507176	C	T	0.00957	S100A6	-	FALSE
chr1	180082720	G	A	0.00577	CEP350	+	FALSE
chr1	212277616	C	T	0.00248	DTL	+	FALSE
chr1	149943157	G	A	0.00024	OTUD7B	-	FALSE
chr2	33623905	G	T	0.00262	LTBP1	+	FALSE
chr3	45722491	A	G	0.00734	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	67874696	T	C	0.00012	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	28825465	A	G	0.00756	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr5	178986978	C	G	0.00341	RUFY1	+	FALSE
chr1	70718278	C	G	0.00663		.	FALSE
chr12	133298938	A	G	0.00034	PGAM5	+	TRUE	AluSg	SINE,Alu
chr19	46053667	A	G	0.00995	OPA3	-	FALSE
chr14	19684445	A	G	0.00351	DUXAP10	+	FALSE
chr1	10520117	T	C	0.00999		.	FALSE	AluSx	SINE,Alu
chr3	48787118	T	C	0.00359	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	28826085	A	G	0.00212	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr3	88104168	C	T	0.00919	CGGBP1	-	FALSE
chr16	81064492	A	G	0.00935	CENPN	+	TRUE	AluSg	SINE,Alu
chr19	21131571	A	G	0.00120	ZNF85	+	FALSE
chr15	71124666	C	A	4.50846E-10	LARP6	-	FALSE
chr1	201845881	A	C	0.00032	IPO9	+	FALSE
chr7	4810530	G	A	0.00236	FOXK1	+	FALSE	(GT)n	SINE,Alu
chr1	12677525	G	A	0.00122	DHRS3	-	FALSE	(A)n	SINE,Alu
chr1	19542250	T	C	0.00780	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	38327586	C	T	0.00198	INPP5B	-	FALSE	AluSx3	SINE,Alu
chr1	6662500	C	G	0.00235	KLHL21	-	FALSE
chr1	900717	C	T	0.00661	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr17	73886212	T	C	0.00724	TRIM65	-	TRUE	FRAM	SINE,Alu
chr1	2241376	C	T	0.01000	SKI	+	FALSE
chr3	14986461	T	C	3.09385E-06	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr7	28860031	A	T	0.00017	CREB5	+	FALSE
chr3	197612430	A	G	0.00052		.	FALSE	AluSp	SINE,Alu
chr2	241825926	T	C	7.75373E-05	C2orf54	-	FALSE
chr1	41204569	C	T	0.00854	NFYC	+	FALSE
chr1	225156655	C	T	0.00671	DNAH14	+	FALSE
chr1	45975584	T	C	0.00327	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr1	120839680	A	C	0.00584	FAM72B	+	FALSE
chr1	26608017	T	A	3.67009E-06		.	FALSE
chr1	87379497	A	G	0.00067	SEP15	-	FALSE
chr3	15094061	G	A	0.00188	MRPS25	-	FALSE
chr6	42855101	A	G	0.00329	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	85715978	C	G	0.00815	C1orf52	-	FALSE
chr1	46164493	T	C	0.00325	IPP	-	TRUE	AluJb	SINE,Alu

RBP	LSM11
Knock-Method	shRNA
RBP Family	LSM
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR762FEO
Platform	HiSeq
Pubmed ID	32252787

LSM11 - Target Gene Network