RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	6282301	T	C	0.00290	ICMT	-	TRUE	AluSz	SINE,Alu
chr20	43996145	T	A	0.00611	SYS1-DBNDD2,SYS1	+	FALSE
chr1	32638906	C	T	4.63739E-10	KPNA6	+	FALSE
chr5	40832557	G	T	0.00814	RPL37	-	FALSE
chr1	44072066	C	T	0.00846	PTPRF	+	FALSE
chr12	123253789	A	G	0.00037	DENR	+	TRUE	(AT)n	SINE,Alu
chr9	111781015	A	C	0.00853	TMEM245	-	FALSE
chr1	23636273	A	T	0.00442	HNRNPR	-	FALSE
chr1	53289759	A	G	0.00329	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr2	37331531	T	C	0.00063		.	FALSE	AluJb	SINE,Alu
chr1	20826083	G	A	0.00289	MUL1	-	FALSE
chr5	40832553	A	T	9.00390E-07	RPL37	-	FALSE
chr1	148010952	C	T	0.00393	NBPF8	-	FALSE
chr12	69237077	A	G	0.00445	MDM2	+	TRUE	(GA)n	SINE,Alu
chr2	9629304	A	G	0.00121	ADAM17	-	FALSE
chr2	203742324	T	C	0.00482		.	FALSE	AluJb	SINE,Alu
chr1	19542458	T	C	0.00113	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr6	25986717	A	G	0.00217	TRIM38	+	TRUE	AluJb	SINE,Alu
chr7	75958151	G	C	0.00250	YWHAG	-	FALSE
chr12	27574182	G	C	0.00014	ARNTL2,ARNTL2-AS1	+,-	FALSE
chr1	114306369	A	T	0.00834	RSBN1	-	FALSE
chr4	95588274	G	A	0.00095	PDLIM5	+	FALSE
chr1	230416038	G	A	0.00626	GALNT2	+	FALSE
chr1	145693060	A	G	2.60299E-05	NBPF20,NBPF10	+	TRUE	AluSz6	SINE,Alu
chr6	74134804	T	C	0.00386		.	FALSE	AluSz	SINE,Alu
chr1	116234083	T	A	0.00477	VANGL1	+	FALSE
chr1	39470977	C	A	0.00347	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr1	16893763	T	C	0.00159	NBPF1	-	FALSE
chr1	1255401	G	T	0.00216	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr2	85776648	T	C	0.00765	GGCX	-	TRUE	AluSz6	SINE,Alu
chr2	86252112	T	C	0.00233	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr6	42857111	A	G	0.00681	RPL7L1	+	FALSE	AluSp	SINE,Alu
chr1	9353122	C	G	0.00562	SPSB1	+	FALSE	(GCG)n	SINE,Alu
chr1	38326547	C	T	0.00212	INPP5B	-	FALSE	AluJr	SINE,Alu
chr1	10366487	T	G	0.00187	KIF1B	+	FALSE
chr1	145209366	A	G	0.00499	NBPF20,NOTCH2NL	+	FALSE
chr19	21302035	A	G	5.57890E-05	ZNF714	+	TRUE	AluSg4	SINE,Alu
chr1	154554947	T	G	0.00511	ADAR	-	FALSE
chr1	28825331	A	G	1.84239E-05	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr3	105295461	G	A	9.74520E-12	ALCAM	+	FALSE
chr1	8045340	C	A	0.00285	PARK7	+	FALSE
chr3	125033835	T	G	0.00385	ZNF148	-	FALSE	AluJb	SINE,Alu
chr1	144931330	C	T	0.00194	NBPF20,PDE4DIP	+,-	FALSE
chr8	144332082	T	C	7.73207E-05	ZFP41	+	FALSE
chr4	17803545	T	C	0.00710	DCAF16	-	TRUE	AluY	SINE,Alu
chr3	196729939	C	T	0.00862	MELTF,MFI2-AS1	+,-	FALSE	G-rich	SINE,Alu
chr4	66439707	T	C	0.00148	EPHA5	-	FALSE
chr3	52289709	G	C	4.88711E-11	WDR82	-	FALSE	MIR	SINE,Alu
chr6	52860746	T	G	0.00011		.	FALSE	7SK	SINE,Alu
chr1	9161203	T	C	0.00235		.	FALSE	AluSx	SINE,Alu
chr11	94801632	C	A	0.00194	SRSF8	+	FALSE
chr19	49468569	G	T	0.00266	FTL	+	FALSE
chr1	90470915	T	A	9.94810E-07	ZNF326	+	FALSE
chr1	155161704	G	C	0.00034	MUC1	-	FALSE
chr1	225707042	T	C	4.11654E-05	ENAH	-	FALSE
chr4	39550549	T	C	0.00014	UGDH-AS1,SMIM14	+,-	FALSE	AluSx1	SINE,Alu
chr1	109967950	T	A	0.00096	PSMA5	-	FALSE
chr1	214531079	A	G	0.00124	PTPN14	-	FALSE
chr2	99813020	A	G	0.00015	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	28929961	T	A	0.00068	TAF12	-	FALSE
chr14	75202734	A	G	0.00016	FCF1	+	TRUE	AluSc	SINE,Alu
chr6	90346418	A	T	1.30335E-05	LYRM2	-	FALSE	AluSz	SINE,Alu
chr1	212277584	G	C	0.00997	DTL	+	FALSE
chr2	127826533	A	G	0.00104	BIN1	-	FALSE
chr1	145688668	A	T	0.00987	NBPF20,NBPF10,RNF115	+	FALSE
chr2	206981487	T	C	0.00281		.	FALSE	AluSg	SINE,Alu
chr16	31469030	T	C	0.00065		.	FALSE	AluSz	SINE,Alu
chr1	44072018	C	T	0.00783	PTPRF	+	FALSE
chr1	3545198	T	C	0.00013	TPRG1L	+	FALSE
chr1	32661615	A	T	0.00454	TXLNA	+	FALSE
chr1	1595540	T	C	0.00042	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr8	11701490	T	C	2.07071E-11	CTSB	-	TRUE	AluSx1	SINE,Alu
chr2	74686329	C	T	0.00640	INO80B-WBP1,WBP1	+	FALSE
chr1	246931057	A	G	0.00048	SCCPDH	+	FALSE
chr1	142690928	C	A	0.00022		.	FALSE
chr7	130629624	T	C	0.00568	LINC-PINT	-	TRUE
chr1	207943211	G	A	0.00248	CD46	+	FALSE	AluSx1	SINE,Alu
chr1	19542310	T	C	0.00532	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	227847344	T	C	0.00205	ZNF678	+	FALSE
chr2	37429627	A	G	0.00330	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	46830110	A	G	0.00283	NSUN4	+	TRUE	AluSx1	SINE,Alu
chr2	207174868	G	A	1.60070E-05	ZDBF2	+	FALSE
chr11	125452298	A	G	0.00583	EI24,STT3A-AS1	+,-	FALSE
chr1	144599819	C	T	0.00682	NBPF20	+	FALSE
chr5	43377330	T	C	0.00039	CCL28	-	TRUE	AluSz	SINE,Alu
chr2	37328087	T	C	0.00313		.	FALSE
chr1	110207639	T	A	0.00080	GSTM4	+	FALSE
chr3	14986098	T	C	0.00000	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr4	3213832	G	A	0.00012	HTT	+	FALSE
chr10	75009585	T	C	2.45347E-10	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	118502757	G	A	0.00793	WDR3,SPAG17	+,-	FALSE	(GT)n	SINE,Alu
chr5	177576458	A	T	0.00427		.	FALSE
chr1	67874697	T	C	0.00010	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	99772827	A	G	0.00377	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr11	67795299	G	A	0.00764	ALDH3B1	+	FALSE
chr16	10625101	T	C	0.00804	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	145368461	A	C	0.00542	NBPF20,NBPF10	+	FALSE
chr1	8412989	A	G	0.00225	RERE	-	FALSE
chr3	12628920	G	C	0.00036	RAF1	-	FALSE
chr6	42854580	A	G	0.00330	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr3	196660052	G	A	0.00200	SENP5	+	FALSE	AluSz	SINE,Alu
chr1	987670	T	G	0.00148	AGRN	+	FALSE
chr1	42886523	T	C	0.00649	RIMKLA	+	FALSE	MIRc	SINE,Alu
chr4	10442610	T	C	0.00174	ZNF518B	-	FALSE
chr1	1570919	C	T	0.00161	CDK11B	-	FALSE
chr1	78201745	G	T	0.00140	USP33	-	FALSE
chr1	38174665	G	A	0.00339	CDCA8	+	FALSE
chr1	3548832	G	C	0.00464	WRAP73	-	FALSE
chr1	16890656	C	T	0.00812	NBPF1	-	FALSE
chr1	26799971	T	A	0.00713	HMGN2	+	FALSE
chr2	85776621	T	C	0.00194	GGCX	-	TRUE	AluSz6	SINE,Alu
chr5	44826677	G	T	0.00941		.	FALSE	(T)n	SINE,Alu
chr8	143739435	C	T	7.32829E-06	JRK	-	FALSE
chr5	126113463	A	C	0.00392	LMNB1	+	FALSE	(CGACGCG)n	SINE,Alu
chr19	24103987	A	G	1.84513E-07	ZNF726	+	TRUE	AluSg4	SINE,Alu
chr15	72635903	C	T	0.00334	HEXA	-	FALSE
chr6	3114457	C	T	0.00320	RIPK1	+	FALSE
chr1	145293428	G	C	0.00855	NBPF20,NBPF10	+	FALSE
chr1	204393480	T	A	0.00783	PIK3C2B	-	FALSE
chr1	10520072	T	C	0.00529		.	FALSE	AluSx	SINE,Alu
chr12	133298349	A	G	2.42844E-07	PGAM5	+	TRUE	AluSp	SINE,Alu
chr4	139088295	C	T	0.00537	SLC7A11-AS1,SLC7A11	+,-	FALSE
chr1	2303108	T	C	5.78895E-05	MORN1	-	FALSE	AluSp	SINE,Alu
chr5	145666109	A	T	0.00728	RBM27	+	FALSE
chr13	30084952	G	A	0.00045	SLC7A1	-	FALSE
chr3	155660279	A	G	0.00594		.	FALSE
chr1	36068370	T	C	0.00067	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	194998813	A	G	0.00572	ACAP2	-	FALSE	AluSx1	SINE,Alu
chr1	214524178	T	C	0.00265	PTPN14	-	TRUE	AluSx	SINE,Alu
chrX	23721458	T	A	0.00413		.	FALSE	AluSc8	SINE,Alu
chr1	76229185	T	A	0.00280	ACADM	+	FALSE
chr3	156258308	T	C	9.02162E-07	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	160967856	T	C	0.00100	F11R	-	TRUE	AluSp	SINE,Alu
chr2	189459785	C	T	0.00262	GULP1	+	FALSE
chr1	26451672	T	C	0.00912	PDIK1L	+	FALSE
chr1	10519912	T	C	0.00185		.	FALSE	AluJr	SINE,Alu
chr1	242251696	C	T	0.00335	PLD5	-	FALSE
chr2	120021785	T	C	0.00751	STEAP3	+	FALSE
chr5	64964314	T	C	0.00208	SGTB	-	TRUE	AluSc	SINE,Alu
chr1	8931947	T	C	0.00059	ENO1	-	FALSE
chr15	90820082	A	G	0.00297		.	FALSE	AluY	SINE,Alu
chr10	65382718	G	A	0.00984	REEP3	+	FALSE	AluSc	SINE,Alu
chr3	120114953	G	A	0.00373	FSTL1	-	FALSE
chr1	36531781	G	A	0.00288		.	FALSE
chr12	133298275	A	G	4.13546E-09	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	6311399	A	G	0.00126	GPR153	-	FALSE
chr1	10521238	T	C	0.00597	DFFA	-	TRUE	AluY	SINE,Alu
chr4	41673604	T	C	0.00580	LIMCH1	+	FALSE
chr1	16932536	C	T	0.00114	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr4	6304286	C	T	0.00054	WFS1	+	FALSE
chr3	8922054	T	C	0.00464	RAD18	-	FALSE
chr2	164466037	A	T	0.00090	FIGN	-	FALSE
chr12	125511312	A	G	0.00638	THRIL	-	FALSE	AluSx1	SINE,Alu
chr5	96366330	G	C	0.00251		.	FALSE	(TG)n	SINE,Alu
chr1	19566382	A	G	0.00513	LOC101927895,EMC1	+,-	FALSE
chr1	46782446	A	G	0.00145	UQCRH	+	FALSE
chr19	23542304	T	C	2.38814E-05	ZNF91	-	TRUE	AluY	SINE,Alu
chr1	25687901	T	C	0.00926	TMEM50A	+	FALSE
chr1	981931	A	G	0.00951	AGRN	+	FALSE
chr1	1595048	T	C	0.00495	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr4	56294628	T	C	0.00234	CLOCK	-	FALSE
chr1	55060362	G	A	0.00246	ACOT11	+	FALSE
chr2	176792488	G	T	0.00195	LNPK	-	FALSE
chr1	144595943	A	G	0.00050	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	9163839	A	G	0.00237		.	FALSE
chr2	47129284	A	G	0.00327	MCFD2	-	FALSE
chr2	37328097	T	C	0.00018		.	FALSE
chr2	206983267	T	C	0.00854		.	FALSE	AluJb	SINE,Alu
chr1	214524531	T	C	0.00753	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	53712569	C	A	0.00061	LRP8	-	FALSE	(CA)n	SINE,Alu
chr1	10520725	T	C	0.00795	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	86049391	T	A	0.00019	CYR61	+	FALSE
chr2	219523584	C	T	0.00299	ZNF142	-	FALSE
chr1	9163334	T	C	0.00108		.	FALSE	AluSp	SINE,Alu
chr1	153907297	C	T	3.91411E-05	DENND4B	-	FALSE	(CTG)n	SINE,Alu
chr1	1252662	T	C	0.00136	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	144606838	A	G	0.00988	NBPF20	+	FALSE
chr1	19542463	T	C	0.00182	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr7	152551581	T	A	0.00313	ACTR3B	+	FALSE
chr8	56985610	A	T	0.00041	RPS20	-	FALSE
chr1	32384710	G	A	0.00299	PTP4A2	-	FALSE
chr1	9160989	T	C	0.00183		.	FALSE	AluJb	SINE,Alu
chr1	78142911	T	C	0.00925	ZZZ3	-	TRUE	AluSx	SINE,Alu
chr1	112266790	C	T	0.00892	FAM212B	-	FALSE
chr1	62627128	A	G	0.00111	PATJ	+	TRUE	AluSx	SINE,Alu
chr9	136209397	G	C	0.00709	MED22	-	FALSE
chr1	46093161	C	T	0.00628	GPBP1L1	-	FALSE
chr3	45960558	C	T	6.37727E-08	FYCO1	-	FALSE
chr1	206566948	G	A	0.00228	SRGAP2	+	FALSE
chr12	96661616	A	G	0.00057	ELK3	+	FALSE
chr1	95658358	T	C	0.00633	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chrX	119572534	C	A	0.00387	LAMP2	-	FALSE
chr6	150047370	T	C	0.00084	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	36789546	A	G	0.00623	EVA1B	-	FALSE	MIRb	SINE,Alu
chr1	204521160	A	G	0.00231	MDM4	+	TRUE	AluSp	SINE,Alu
chr1	148010973	C	T	0.00045	NBPF8	-	FALSE
chr12	69158881	A	G	0.00219	SLC35E3	+	TRUE	AluSp	SINE,Alu
chr7	44918804	T	C	0.00015	PURB	-	TRUE	AluSg	SINE,Alu
chr7	152345392	T	C	0.00643	XRCC2	-	TRUE	AluSx1	SINE,Alu
chr1	1419130	A	G	0.00107	ATAD3B	+	FALSE	AluSz	SINE,Alu
chr3	179306775	C	T	7.88487E-06	MRPL47	-	FALSE
chr1	11710798	T	G	0.00328	FBXO2	-	FALSE	(CCT)n	SINE,Alu
chr2	128601490	T	C	0.00013		.	FALSE	AluJr	SINE,Alu
chr10	115526177	A	G	0.00237	PLEKHS1	+	FALSE
chr1	9163383	T	C	0.00383		.	FALSE	AluSp	SINE,Alu
chr3	155660773	A	G	0.00592		.	FALSE	AluSz	SINE,Alu
chr1	13936953	C	T	0.00515	PDPN	+	FALSE
chr1	28920925	A	G	0.00294	RAB42	+	TRUE	AluSx	SINE,Alu
chr2	37327590	T	C	0.00364		.	FALSE
chr1	95363041	C	T	0.00105	CNN3	-	FALSE
chr1	44818525	T	C	0.00235	ERI3	-	FALSE
chr1	11901592	T	C	0.00076	CLCN6,NPPA-AS1	+	FALSE
chr1	100655177	G	A	0.00923	DBT	-	FALSE
chr3	48787052	T	C	0.00226	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr2	86252043	T	C	0.00909	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr4	1006333	G	A	0.00117	FGFRL1	+	FALSE	(CTG)n	SINE,Alu
chr1	16723840	G	A	0.00072	SZRD1	+	FALSE
chr18	33831189	C	A	0.00763	MOCOS	+	FALSE
chr1	114443618	A	G	0.00910	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr6	160526905	C	A	0.00268	IGF2R	+	FALSE
chr7	7283569	G	A	0.00032	C1GALT1	+	FALSE	(AT)n	SINE,Alu
chr10	47221452	T	C	0.00869		.	FALSE	AluJb	SINE,Alu
chr1	201846630	C	A	0.00212	IPO9	+	FALSE	(CA)n	SINE,Alu
chr1	214529740	T	C	0.00356	PTPN14	-	TRUE
chr1	1169728	G	T	0.00745	B3GALT6	+	FALSE
chr2	102484490	G	T	0.00635	MAP4K4	+	FALSE
chr5	43290210	A	G	0.00565	HMGCS1	-	FALSE	A-rich	SINE,Alu
chr1	153920564	A	G	0.00323	CRTC2	-	FALSE
chr1	145369709	A	G	0.00019	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr17	65334758	T	C	1.31160E-05	PSMD12	-	TRUE	AluSq	SINE,Alu
chr1	46078630	A	G	0.00131	NASP	+	FALSE
chr2	62095565	A	T	0.00355	CCT4	-	FALSE
chr3	141879810	T	C	0.00784	GK5	-	FALSE	AluJr	SINE,Alu
chr1	28836974	A	G	9.88453E-07	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr1	36531942	A	G	0.00042		.	FALSE	AluSq2	SINE,Alu
chr1	28835847	A	G	0.00042	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	31905882	A	C	0.00132	SERINC2	+	FALSE
chr1	214638296	G	A	3.68085E-08	PTPN14	-	FALSE
chr2	106510201	C	A	0.00638	NCK2	+	FALSE
chr1	109818161	C	T	6.45247E-05	CELSR2	+	FALSE
chr1	145376020	G	A	0.00478	NBPF20,NBPF10	+	FALSE
chr1	184762524	T	C	0.00260	FAM129A	-	TRUE	AluSz	SINE,Alu
chr17	57279264	A	G	0.00793	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	33146255	C	A	0.00182	SYNC,RBBP4	+,-	FALSE
chr22	39259541	A	G	0.00134	CBX6	-	FALSE
chr1	231377081	C	T	6.17358E-06	GNPAT	+	FALSE
chr14	70838324	T	C	0.00011	SYNJ2BP-COX16,SYNJ2BP	-	TRUE	AluSg	SINE,Alu
chr1	53289686	A	G	0.00265	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	28826118	A	G	0.00023	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr1	197475873	G	A	0.00844	DENND1B	-	FALSE
chr1	146649884	T	A	0.00612	PDIA3P1	+	FALSE
chr5	37290496	T	C	0.00410		.	FALSE	AluSz	SINE,Alu
chr4	84525974	T	C	0.00255	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr5	37290400	T	C	0.00085		.	FALSE	AluSz	SINE,Alu
chr1	569874	C	T	0.00076		.	FALSE
chr1	10519119	T	C	0.00892		.	FALSE	AluSx3	SINE,Alu
chr1	1419690	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr5	177019196	G	C	0.00509	TMED9	+	FALSE	(GCG)n	SINE,Alu
chr1	10519912	T	C	0.00737		.	FALSE	AluJr	SINE,Alu
chr5	40826639	A	G	0.00978	LOC100506548	-	FALSE	LTR78	SINE,Alu

RBP	HNRNPLL
Knock-Method	shRNA
RBP Family	RRM_5
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR490DYI
Platform	HiSeq
Pubmed ID	32252787

HNRNPLL - Target Gene Network