Dataset Overview
RBP
ABCF1
Knock-Method
shRNA
RBP Family
Non-canonical_RBP
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR610VTA
Platform
HiSeq
Pubmed ID
32252787
ABCF1 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of ABCF1
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
10.57
24.48
1.32527
3.98466E-34
6.35728E-33
A1CF
32.44
41.45
0.66778
1.40226E-30
1.89199E-29
A2M
2405.22
3476.62
0.37747
5.51459E-12
2.58423E-11
A4GALT
0.67
0.15
-1.92789
5.83423E-09
2.12430E-08
AACS
11.23
9.14
-0.34811
4.42813E-07
1.32545E-06
AADAC
0.3
1.07
2.15342
8.48241E-11
3.65773E-10
AADAT
6.54
9.98
0.47550
4.23159E-05
9.90800E-05
AAED1
4.91
3.3
-0.41354
1.21660E-05
3.04954E-05
AAGAB
8.11
9.1
0.17000
0.02441
0.03740
AAK1
3.76
5.32
0.52516
1.97632E-09
7.52803E-09
Showing 1 to 10 of 9,214 entries
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Function Analysis of Target Genes of ABCF1
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABI2
204240779_204240855_204231599_204231767_204244930_204245107
0.00782
0.06
DataSet_01_58
View details
ABLIM1
116213137_116213242_116211382_116211430_116225456_116225586
0.00356
0.037
DataSet_01_58
View details
ACIN1
23536522_23537880_23535174_23535217_23538684_23538822
0.00353
-0.123
DataSet_01_58
View details
ADRM1
60883423_60883526_60883038_60883234_60883710_60883918
0.00912
0.029
DataSet_01_58
View details
AFP
74320952_74321007_74319549_74319614_74321347_74321458
0.00000
-0.014
DataSet_01_58
View details
AHSA2
61413114_61413216_61412636_61412753_61413580_61413632
0.00152
-0.1
DataSet_01_58
View details
AHSG
186337645_186337729_186336300_186336426_186338374_186339089
0.00003
-0.013
DataSet_01_58
View details
AHSG
186336079_186336280_186334975_186335139_186338374_186339107
0.00159
-0.209
DataSet_01_58
View details
AHSG
186336079_186336177_186334975_186335139_186336324_186336426
0.00581
-0.007
DataSet_01_58
View details
AKAP8L
15509440_15509577_15508524_15508666_15510112_15510221
0.00001
0.135
DataSet_01_58
View details
Showing 1 to 10 of 162 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACAT1
108002633_108002681_108004546_108004664_107992293_107992405
0.00021
0.122
DataSet_01_58
View details
ACP1
272036_272150_272191_272305_271865_271939
0.00477
-0.081
DataSet_01_58
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ACTN4
39200896_39200982_39201915_39202001_39200034_39200116
0.00348
-0.042
DataSet_01_58
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AFMID
76187050_76187141_76198783_76198832_76183442_76183514
0.00758
0.054
DataSet_01_58
View details
AHSG
186336079_186336280_186336324_186336426_186334975_186335139
0.00000
-0.013
DataSet_01_58
View details
AHSG
186336079_186336280_186336285_186336426_186334975_186335139
0.00001
-0.154
DataSet_01_58
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AHSG
186336079_186336280_186336300_186336426_186334975_186335139
0.00001
-0.143
DataSet_01_58
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AHSG
186336079_186336280_186336285_186336426_186334975_186335139
0.00090
-0.007
DataSet_01_58
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AHSG
186336079_186336280_186336300_186336426_186334975_186335139
0.00334
-0.006
DataSet_01_58
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ALB
74275071_74275140_74275140_74275204_74274354_74274522
0.00107
-0.07
DataSet_01_58
View details
Showing 1 to 10 of 129 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AKAP8L
15509440_15510221_15510112_15510221_15508524_15508666
0.00003
0.118
DataSet_01_58
View details
AP1G2
24035024_24035369_24035272_24035369_24034814_24034910
0.00004
-0.154
DataSet_01_58
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ARID1B
157470044_157470115_157470044_157470085_157488173_157488319
0.00772
0.218
DataSet_01_58
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CPNE1
34220084_34220307_34220232_34220307_34219866_34219947
0.00038
-0.102
DataSet_01_58
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CYSTM1
139554772_139554922_139554772_139554788_139574030_139574237
0.00356
-0.542
DataSet_01_58
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GTF2I
74173109_74173313_74173109_74173185_74173877_74175022
0.00029
0.081
DataSet_01_58
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IVNS1ABP
185274646_185274775_185274667_185274775_185270565_185270695
0.00694
0.298
DataSet_01_58
View details
MAP4K4
102503549_102503723_102503549_102503699_102504239_102504399
0.00366
0.058
DataSet_01_58
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NOMO1
14972577_14972779_14972577_14972691_14973871_14973999
0.00176
0.041
DataSet_01_58
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ODF2
131223220_131223346_131223220_131223289_131233586_131233747
0.00172
-0.172
DataSet_01_58
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Showing 1 to 10 of 15 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A2M
9225248_9225320_9225248_9225317_9225392_9225467
0.00368
-0.424
DataSet_01_58
View details
AC040977.1
6915927_6916096_6915927_6916076_6916984_6917062
0.00823
-0.058
DataSet_01_58
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AC040977.1
6915927_6916080_6915927_6916076_6916984_6917062
0.00916
-0.05
DataSet_01_58
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ACIN1
23532137_23532307_23532137_23532274_23532644_23532696
0.00255
-0.503
DataSet_01_58
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APOA2
161193139_161193291_161193139_161193215_161193384_161193418
0.00001
0.156
DataSet_01_58
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CLINT1
157216370_157216575_157216370_157216459_157218710_157219003
0.00962
-0.137
DataSet_01_58
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DMTN
21926526_21927029_21926929_21927029_21925037_21925193
0.00462
0.067
DataSet_01_58
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FN1
216236631_216237098_216236631_216236738_216238044_216238134
0.00000
-0.01
DataSet_01_58
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FN1
216236631_216237098_216236631_216237023_216238044_216238134
0.00010
-0.022
DataSet_01_58
View details
FTCD
47558793_47558966_47558793_47558837_47565330_47565435
0.00005
-0.113
DataSet_01_58
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Showing 1 to 10 of 24 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACTB
5567911_5569031_5567911_5568350_5568791_5569031
0.00125
0.01
DataSet_01_58
View details
AHSA2
61412636_61413632_61412636_61412753_61413580_61413632
0.00000
-0.277
DataSet_01_58
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AP1G2
24034814_24035369_24034814_24034910_24035272_24035369
0.00001
-0.233
DataSet_01_58
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ASXL1
31015930_31016225_31015930_31016051_31016127_31016225
0.00720
0.059
DataSet_01_58
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CD46
207940357_207943707_207940357_207940540_207943665_207943707
0.00462
0.134
DataSet_01_58
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FGG
155530781_155531349_155530781_155530915_155531218_155531349
0.00337
0.007
DataSet_01_58
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FN1
216243852_216247048_216243852_216244040_216246934_216247048
0.00006
-0.013
DataSet_01_58
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FZD6
104312183_104312512_104312183_104312312_104312427_104312512
0.00805
-0.217
DataSet_01_58
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HNRNPA2B1
26231920_26232148_26231920_26231958_26232114_26232148
0.00000
0.039
DataSet_01_58
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HNRNPH1
179043881_179044111_179043881_179043959_179044051_179044111
0.00679
0.077
DataSet_01_58
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Showing 1 to 10 of 14 entries
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
206580231
A
G
0.00100
SRGAP2
+
FALSE
chr1
120695049
G
A
0.00129
.
FALSE
chr1
10368093
C
A
0.00131
KIF1B
+
FALSE
chr1
10438014
A
C
0.00046
KIF1B
+
FALSE
chr1
26755291
A
G
0.00044
LIN28A
+
TRUE
AluSx1
SINE,Alu
chr1
9161366
T
C
0.00189
.
FALSE
AluSx
SINE,Alu
chr1
74672474
G
A
0.00150
FPGT-TNNI3K,FPGT
+
FALSE
X12_DNA
SINE,Alu
chr1
10519064
T
C
0.00515
.
FALSE
AluSx3
SINE,Alu
chr1
20826784
T
C
0.00204
MUL1
-
FALSE
chr1
16932495
A
C
0.00385
NBPF1
-
FALSE
L1MC2
SINE,Alu
Showing 1 to 10 of 452 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression