Dataset Overview
RBP
PPIL4
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR851KEX
Platform
HiSeq
Pubmed ID
32252787
PPIL4 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of PPIL4
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1CF
30.66
33.07
0.27878
0.00107
0.00414
AAGAB
8.9
6.52
-0.25756
0.04067
0.08908
AAK1
2.42
2.5
0.29586
0.04421
0.09542
AAMDC
23.01
16.54
-0.36054
0.01273
0.03395
AARS
64.38
71.55
0.31403
0.00081
0.00326
AARS2
4.86
6.44
0.44126
3.01847E-05
0.00018
AASDH
5.26
4.27
-0.24383
0.03440
0.07773
AASDHPPT
18.09
10.18
-0.95791
2.16818E-15
1.00962E-13
AATF
16.24
19.7
0.32927
0.00071
0.00288
AATK
1.82
4.11
1.56817
2.30807E-23
3.40174E-21
Showing 1 to 10 of 6,238 entries
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Function Analysis of Target Genes of PPIL4
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52623792_52623840_52619601_52619745_52645340_52645435
0.00013
0.098
DataSet_01_6
View details
AASS
121722841_121722945_121721553_121721649_121726065_121726233
0.00923
0.379
DataSet_01_6
View details
ABCC2
101576820_101576911_101572774_101572901_101577064_101577241
0.00755
0.24
DataSet_01_6
View details
ABHD12
25319520_25319640_25303960_25304066_25319862_25319987
0.00222
-0.022
DataSet_01_6
View details
ACACB
109697869_109697954_109696777_109696913_109698284_109698462
0.00412
0.209
DataSet_01_6
View details
AFMID
76200736_76200822_76198783_76198832_76200908_76200981
0.00650
0.16
DataSet_01_6
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AFP
74310709_74310839_74309063_74309161_74315051_74315184
0.00140
-0.014
DataSet_01_6
View details
AHSG
186337663_186337729_186336358_186336426_186338374_186339089
0.00902
-0.481
DataSet_01_6
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AJ006998.2
16757940_16758008_16742840_16743230_16762896_16762937
0.00175
-0.137
DataSet_01_6
View details
AKAP8L
15509440_15509577_15508524_15508666_15510112_15510221
0.00280
0.114
DataSet_01_6
View details
Showing 1 to 10 of 243 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACAD10
112165765_112165947_112171726_112171872_112159474_112159543
0.00473
0.202
DataSet_01_6
View details
ACP1
272036_272150_275139_275201_271865_271939
0.00000
-0.152
DataSet_01_6
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ACP1
272036_272150_272191_272305_271865_271939
0.00104
-0.093
DataSet_01_6
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AFMID
76198783_76198832_76202026_76202131_76187050_76187141
0.00716
-0.055
DataSet_01_6
View details
AFP
74310709_74310839_74313330_74313393_74309063_74309161
0.00001
-0.116
DataSet_01_6
View details
AHSG
186334933_186335139_186337645_186337729_186334231_186334316
0.00748
0.497
DataSet_01_6
View details
ALB
74275071_74275140_74275140_74275204_74274354_74274522
0.00013
-0.189
DataSet_01_6
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ALDOA
30077196_30077248_30078205_30078359_30075744_30075826
0.00384
-0.01
DataSet_01_6
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ALG8
77817852_77817958_77820487_77820627_77815401_77815499
0.00220
-0.119
DataSet_01_6
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ANXA4
70008651_70008706_70015185_70015273_69969105_69969307
0.00086
-0.114
DataSet_01_6
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Showing 1 to 10 of 123 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACYP1
75530602_75530752_75530656_75530752_75530172_75530264
0.00691
0.197
DataSet_01_6
View details
ANAPC16
73975805_73975990_73975805_73975896_73983645_73983814
0.00174
0.192
DataSet_01_6
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APEX1
20923423_20923535_20923423_20923487_20923736_20923932
0.00001
-0.36
DataSet_01_6
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BCL2L2-PABPN1
23793346_23793537_23793346_23793498_23794455_23794578
0.00020
-0.095
DataSet_01_6
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BTF3
72794232_72794411_72794232_72794383_72794958_72795009
0.00999
0.007
DataSet_01_6
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C12orf57
7053638_7053815_7053638_7053728_7054933_7055165
0.00624
-0.106
DataSet_01_6
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CYSTM1
139554740_139554870_139554740_139554788_139574030_139574237
0.00760
-0.029
DataSet_01_6
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DHRS2
24113617_24113763_24113617_24113752_24114035_24114091
0.00136
0.011
DataSet_01_6
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DLK2
43420742_43420873_43420760_43420873_43419677_43419822
0.00447
-0.709
DataSet_01_6
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DRAM2
111663137_111663315_111663153_111663315_111662498_111662581
0.00933
0.086
DataSet_01_6
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Showing 1 to 10 of 21 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCA2
139903182_139903320_139903182_139903260_139903402_139903505
0.00869
-0.222
DataSet_01_6
View details
AC007319.1
188412209_188412434_188412270_188412434_188411804_188411890
0.00800
0.328
DataSet_01_6
View details
AC007319.1
188412270_188412434_188412307_188412434_188411804_188411890
0.00689
-0.362
DataSet_01_6
View details
ARL6IP4
123466117_123466426_123466141_123466426_123465675_123465846
0.00382
0.127
DataSet_01_6
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ATXN2L
28843507_28843720_28843525_28843720_28842282_28842393
0.00031
0.064
DataSet_01_6
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ATXN7L3
42273401_42273468_42273401_42273447_42273763_42273786
0.00345
0.175
DataSet_01_6
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C17orf76-AS1
16342841_16343017_16342973_16343017_16342640_16342728
0.00515
-0.082
DataSet_01_6
View details
CASC3
38324455_38324508_38324497_38324508_38324102_38324201
0.00892
-0.51
DataSet_01_6
View details
CFB
31912756_31912963_31912954_31912963_31912561_31912630
0.00240
0.051
DataSet_01_6
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CPSF2
92600331_92600447_92600354_92600447_92597294_92597477
0.00849
0.225
DataSet_01_6
View details
Showing 1 to 10 of 44 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACADVL
7125985_7126556_7125985_7126184_7126451_7126556
0.00916
-0.082
DataSet_01_6
View details
ADRBK1
67049741_67050013_67049741_67049836_67049905_67050013
0.00355
-0.064
DataSet_01_6
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AMBRA1
46563494_46564948_46563494_46564531_46564801_46564948
0.00673
-0.256
DataSet_01_6
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AMT
49457142_49457775_49457142_49457221_49457643_49457775
0.00962
-0.076
DataSet_01_6
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APOA1
116708060_116708330_116708060_116708123_116708234_116708330
0.00003
-0.166
DataSet_01_6
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APOA2
161193170_161193418_161193170_161193215_161193384_161193418
0.00000
-0.228
DataSet_01_6
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APOA2
161193170_161193349_161193170_161193215_161193308_161193349
0.00000
-0.413
DataSet_01_6
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ATXN2L
28847253_28848558_28847253_28847806_28848048_28848558
0.00225
-0.108
DataSet_01_6
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AUP1
74755379_74755616_74755379_74755448_74755543_74755616
0.00148
-0.021
DataSet_01_6
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AUP1
74754067_74754490_74754067_74754279_74754374_74754490
0.00678
0.26
DataSet_01_6
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
25168124
G
C
0.00669
CLIC4
+
FALSE
chr1
109242607
G
A
0.00652
PRPF38B
+
FALSE
chr1
9161231
T
C
0.00481
.
FALSE
AluSx
SINE,Alu
chr1
16893686
G
C
0.00171
NBPF1
-
FALSE
chr1
244869241
C
A
0.00213
DESI2
+
FALSE
chr1
226333556
C
A
0.00250
ACBD3
-
FALSE
(CAAAA)n
SINE,Alu
chr1
244572644
G
C
0.00033
ADSS
-
FALSE
chr1
10520117
T
C
0.00078
.
FALSE
AluSx
SINE,Alu
chr1
789050
G
A
0.00449
LINC01128
+
FALSE
chr1
120165040
T
C
0.00195
ZNF697
-
FALSE
Showing 1 to 10 of 272 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression