RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	194998813	A	G	0.00572	ACAP2	-	FALSE	AluSx1	SINE,Alu
chr1	33219771	G	C	0.00256	KIAA1522	+	FALSE
chr16	29454768	A	G	0.00564	SMG1P6,BOLA2-SMG1P6	-	FALSE
chr1	19542401	T	C	0.00077	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	179044110	A	G	5.39593E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	6582868	T	C	0.00368	NOL9	-	TRUE	AluSg	SINE,Alu
chr11	65404868	T	G	0.00022	PCNX3	+	FALSE
chr1	36067817	T	C	0.00339	PSMB2	-	TRUE	AluSz	SINE,Alu
chr6	71298816	A	T	0.00287		.	FALSE
chr1	110466466	T	C	0.00135	CSF1	+	FALSE
chr6	44417835	A	G	8.27091E-07	CDC5L	+	TRUE	AluSx	SINE,Alu
chr1	21766776	G	C	0.00343	NBPF3	+	FALSE
chr1	43394666	G	A	0.00224	SLC2A1	-	FALSE
chr1	6283264	T	C	0.00284	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	148753279	G	T	0.00358		.	FALSE
chr1	68168152	C	T	0.00258	GNG12	-	FALSE
chr2	38522141	G	T	0.00147	ATL2	-	FALSE
chr1	36067886	T	C	1.98907E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	23636016	T	G	0.00796	HNRNPR	-	FALSE
chr1	160966351	T	C	0.00023	F11R	-	TRUE	AluSg	SINE,Alu
chr2	25456869	G	A	0.00902	DNMT3A	-	FALSE
chr2	37431521	A	G	0.00783	CEBPZOS,CEBPZ	+,-	FALSE	AluSc	SINE,Alu
chr1	28661633	A	G	0.00053	MED18	+	TRUE	AluSg	SINE,Alu
chr1	26604691	G	C	0.00043	CEP85	+	FALSE
chr1	1419888	A	G	0.00630	ATAD3B	+	TRUE	AluSp	SINE,Alu
chrX	2824317	T	C	0.00047	ARSD	-	TRUE	AluJb	SINE,Alu
chr1	45244411	C	A	0.00656	RPS8	+	FALSE
chr1	101443431	C	T	0.00013	SLC30A7	+	FALSE	AluSq2	SINE,Alu
chr1	235272660	C	T	0.00111	TOMM20	-	FALSE	Tigger10	SINE,Alu
chr1	16889014	C	T	0.00722	NBPF1	-	FALSE
chr1	9163465	T	C	0.00342		.	FALSE	AluSp	SINE,Alu
chr3	49762662	G	T	6.99764E-06	IP6K1	-	FALSE
chr2	37333924	T	C	0.00298	EIF2AK2	-	FALSE	AluSz	SINE,Alu
chr1	39989926	T	C	0.00354	BMP8A,PPIEL	+,-	FALSE
chr1	6653508	G	A	0.00320	KLHL21	-	FALSE
chr1	160231113	C	T	0.00204	DCAF8	-	FALSE
chr2	242384368	G	A	0.00031	FARP2	+	FALSE	AluJr	SINE,Alu
chr2	112252626	A	C	0.00048	MIR4435-2HG	-	FALSE
chr1	900720	A	T	0.00711	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr1	10520819	T	C	0.00034	DFFA	-	TRUE	AluSc8	SINE,Alu
chr3	49315576	T	C	0.00191	USP4	-	FALSE
chr1	27107948	G	A	0.00177	ARID1A	+	FALSE
chr1	92862764	A	G	0.00415		.	FALSE	AluJr	SINE,Alu
chr1	1251631	T	C	0.00256	CPSF3L	-	TRUE	AluSz	SINE,Alu
chr6	74133914	T	C	0.00014		.	FALSE	AluY	SINE,Alu
chr16	10623660	T	C	0.00074	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	117531179	G	A	0.00116	PTGFRN	+	FALSE
chr1	16891365	G	A	1.42078E-05	NBPF1	-	FALSE
chr5	126889370	C	T	0.00713	PRRC1	+	FALSE
chr7	91742142	C	A	0.00478	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr1	1309885	A	G	0.00010	AURKAIP1	-	FALSE
chr3	33038222	A	T	0.00379	GLB1	-	FALSE
chr17	73886219	T	C	8.52474E-05	TRIM65	-	TRUE	FRAM	SINE,Alu
chr1	16933643	A	G	0.00279	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr2	178086785	C	A	0.00808	HNRNPA3	+	FALSE
chr16	10623566	T	C	0.00019	EMP2	-	TRUE	AluSp	SINE,Alu
chr9	131457039	C	T	0.00148	SET	+	FALSE
chr1	94930345	G	A	1.57139E-05	ABCD3	+	FALSE
chr3	196670095	C	A	1.97381E-07	NCBP2-AS2	+	FALSE
chr1	9294903	C	G	0.00353	H6PD	+	FALSE
chr1	145369480	A	G	7.08400E-07	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr5	180682612	A	T	0.00235	CTC-338M12.4	+	FALSE
chr1	40435513	C	A	0.00656	MFSD2A	+	FALSE
chr1	43309548	G	A	0.00764	ERMAP	+	FALSE
chr10	47221465	T	C	0.00201		.	FALSE	AluJb	SINE,Alu
chr1	155695998	A	G	0.00078	DAP3	+	TRUE	AluSp	SINE,Alu
chr2	99812447	A	G	0.00525	MRPL30	+	TRUE	AluSx	SINE,Alu
chr1	185014720	A	G	0.00989	RNF2	+	FALSE
chr1	9165685	G	A	7.66901E-05	GPR157	-	FALSE
chr1	76255228	G	A	0.00073	RABGGTB,SNORD45B	+	FALSE
chr3	10192744	A	G	3.36147E-05	VHL	+	TRUE	AluSx1	SINE,Alu
chr19	13884084	A	G	0.00843	MRI1	+	TRUE	AluSz	SINE,Alu
chr2	98264656	T	A	0.00993	COX5B	+	FALSE
chr1	10043053	A	G	0.00318	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr15	41593308	A	G	0.00619		.	FALSE	AluSz6	SINE,Alu
chr3	10193796	A	G	0.00291	VHL	+	TRUE	AluSx	SINE,Alu
chr1	94343023	A	G	0.00363	DNTTIP2	-	FALSE
chr2	37330172	T	G	0.00972		.	FALSE
chr3	14526649	T	G	0.00260	SLC6A6	+	FALSE
chr9	137330714	A	C	0.00030	RXRA	+	FALSE
chr1	38326728	T	C	0.00399	INPP5B	-	TRUE	AluJr	SINE,Alu
chr4	39550084	T	C	2.47241E-05	UGDH-AS1,SMIM14	+,-	FALSE	FLAM_C	SINE,Alu
chr1	220231959	T	C	2.75997E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr15	23282589	A	G	0.00291	HERC2P2	-	FALSE
chr7	17384395	A	G	0.00856	AHR	+	TRUE	AluSx	SINE,Alu
chr2	217366919	A	G	0.00709		.	FALSE	AluSz6	SINE,Alu
chr3	47953733	C	A	0.00057	MAP4	-	FALSE
chr1	155695968	A	G	0.00439	DAP3	+	TRUE	AluSp	SINE,Alu
chr3	12940377	G	T	0.00878	IQSEC1	-	FALSE
chr1	100657416	C	T	0.00102	DBT	-	FALSE	AluJb	SINE,Alu
chr12	100562935	G	T	0.00074	GOLGA2P5	-	FALSE	AluSg	SINE,Alu
chr4	185309396	G	A	0.00199	IRF2	-	FALSE	(GGGAT)n	SINE,Alu
chr1	19542458	T	C	7.14858E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	16935130	C	T	0.00288	NBPF1	-	FALSE
chr6	166824706	A	T	0.00048	RPS6KA2	-	FALSE	(T)n	SINE,Alu
chr8	25317824	A	T	0.00017	CDCA2	+	FALSE
chr1	20975992	T	C	0.00027	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr2	37330391	T	C	0.00134		.	FALSE	AluSq2	SINE,Alu
chr3	66428450	G	A	0.00355	SLC25A26	+	FALSE
chr1	93307477	A	G	6.92611E-06	FAM69A,RPL5	+,-	FALSE
chr16	66923452	A	G	0.00065	PDP2	+	TRUE	AluSz	SINE,Alu
chr1	67881005	C	T	0.00776	SERBP1	-	FALSE
chr1	183596136	A	G	0.00123	ARPC5	-	FALSE
chr1	40537923	G	A	0.00609	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	28835937	A	G	0.00181	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	204521580	A	G	0.00469	MDM4	+	TRUE	AluSg	SINE,Alu
chr2	206983267	T	C	0.00133		.	FALSE	AluJb	SINE,Alu
chr2	206987629	T	C	0.00491		.	FALSE	AluJb	SINE,Alu
chr10	8116464	G	A	0.00695	GATA3	+	FALSE	A-rich	SINE,Alu
chr20	35520229	T	C	3.77169E-05	TLDC2,SAMHD1	+,-	FALSE	AluSx3	SINE,Alu
chr1	180859304	T	C	2.77658E-06	XPR1	+	FALSE
chr1	54692334	T	C	5.22151E-05	SSBP3	-	FALSE	(T)n	SINE,Alu
chr1	44818528	T	G	0.00486	ERI3	-	FALSE
chr16	10625406	T	C	1.26372E-11	EMP2	-	TRUE	AluSx	SINE,Alu
chr3	122283293	C	G	0.00071	DTX3L,PARP9	+,-	FALSE
chr10	13320110	T	C	0.00193	PHYH	-	FALSE
chr1	109465170	T	C	0.00565	GPSM2	+	FALSE
chr1	19542456	T	C	0.00135	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	37429738	A	G	0.00203	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr3	33430397	C	T	0.00171	UBP1	-	FALSE
chr15	90375419	T	C	0.00521	C15orf38-AP3S2,AP3S2	-	TRUE	AluJr	SINE,Alu
chr2	11318235	G	C	0.00911	PQLC3	+	FALSE
chr1	19543353	T	C	0.00036	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr5	149829071	T	C	0.00360	RPS14	-	FALSE
chr2	3504687	A	G	0.00755	ADI1	-	FALSE
chr10	89004545	T	C	0.00192	NUTM2A-AS1	-	FALSE	MSTA	SINE,Alu
chr2	99812447	A	G	0.00587	MRPL30	+	TRUE	AluSx	SINE,Alu
chr2	3592638	T	C	0.00941	RNASEH1	-	TRUE	AluSz6	SINE,Alu
chr1	32373837	G	T	0.00068	PTP4A2	-	FALSE	(T)n	SINE,Alu
chr12	125511312	A	G	0.00638	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	24862643	T	G	0.00933	RCAN3	+	FALSE
chr6	42856118	A	G	0.00743	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr14	74526154	T	C	0.00030	BBOF1,ALDH6A1	+,-	FALSE	AluSp	SINE,Alu
chr1	13942885	C	A	0.00038	PDPN	+	FALSE
chr1	2522392	G	A	0.00227	FAM213B,MMEL1	+,-	FALSE
chr1	47746678	G	C	0.00328	STIL	-	FALSE
chr1	11780004	G	T	0.00216	DRAXIN	+	FALSE
chr2	24225554	A	G	0.00419		.	FALSE	AluSq2	SINE,Alu
chr16	10623571	T	C	0.00329	EMP2	-	TRUE	AluSp	SINE,Alu
chr2	224844864	A	G	7.12020E-05	SERPINE2	-	FALSE	L2b	SINE,Alu
chr10	88951001	G	A	0.00033	FAM35A	+	FALSE
chr1	203277243	G	T	1.60795E-05	BTG2	+	FALSE
chr3	184429718	A	G	0.00914	MAGEF1	-	FALSE
chr2	37328034	T	C	0.00047		.	FALSE
chr1	21544447	G	A	0.00115	ECE1	-	FALSE
chr19	13883923	A	G	0.00493	MRI1	+	TRUE	AluSz	SINE,Alu
chr1	6704652	C	T	1.57063E-06	DNAJC11	-	FALSE
chr1	25894472	C	G	0.00594	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	54493197	T	C	0.00064	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr6	31110789	T	C	0.00798		.	FALSE
chr1	33148225	A	G	0.00031	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr10	104417853	T	A	0.00393	TRIM8	+	FALSE	(AAT)n	SINE,Alu
chr1	92862804	A	G	0.00043		.	FALSE	AluJr	SINE,Alu
chr3	195965115	A	T	0.00098	PCYT1A	-	FALSE
chr3	45960851	C	T	0.00299	FYCO1	-	FALSE
chr1	19543249	T	C	0.00559	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	10517314	T	C	0.00288		.	FALSE	AluJr	SINE,Alu
chr17	73886212	T	C	0.00724	TRIM65	-	TRUE	FRAM	SINE,Alu
chr7	135285707	G	A	0.00084	NUP205	+	FALSE
chr1	6583066	T	C	0.00209	NOL9	-	TRUE	AluSx4	SINE,Alu
chr3	170113815	G	T	0.00586	SKIL	+	FALSE
chr7	6501833	A	T	0.00937	KDELR2	-	FALSE
chr1	203277252	G	A	0.00559	BTG2	+	FALSE
chr2	3597974	T	C	1.93309E-05	RNASEH1	-	FALSE
chr2	9770610	A	G	0.00466	YWHAQ	-	FALSE
chr1	53288870	A	G	0.00501	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	211921723	A	G	4.36683E-06	LPGAT1	-	FALSE
chr4	13604182	T	C	1.45661E-06	BOD1L1	-	FALSE
chr2	37331134	T	C	0.00042		.	FALSE	AluSx1	SINE,Alu
chr3	170021211	A	C	3.61705E-05	PRKCI	+	FALSE
chr12	64844149	A	G	0.00456		.	FALSE	AluJr4	SINE,Alu
chr7	6695426	G	T	0.00893	ZNF316	+	FALSE
chr1	67874689	T	C	7.42611E-10	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr17	5288079	A	C	0.00085	RABEP1	+	FALSE
chr1	3545194	C	G	0.00044	TPRG1L	+	FALSE
chr3	183209052	T	C	0.00041	KLHL6	-	TRUE	AluSq	SINE,Alu
chr15	42859452	A	G	0.00123	HAUS2	+	TRUE	AluJb	SINE,Alu
chr1	1647871	T	C	0.00906	CDK11B,CDK11A	-	FALSE
chr1	24865333	A	G	0.00087		.	FALSE	FLAM_A	SINE,Alu
chr5	43527402	T	C	0.00539	PAIP1	-	FALSE
chr1	10518821	T	C	0.00913		.	FALSE	AluSx1	SINE,Alu
chr3	14526648	T	G	9.03719E-05	SLC6A6	+	FALSE
chr2	64860431	T	G	0.00213	SERTAD2	-	FALSE
chr7	115898258	A	T	0.00314	TES	+	FALSE	(T)n	SINE,Alu
chr1	38280010	C	T	0.00393	MTF1	-	FALSE
chr13	114204255	A	G	0.00134	TMCO3	+	FALSE
chr1	33145957	G	T	0.00189	SYNC,RBBP4	+,-	FALSE	(T)n	SINE,Alu
chr7	2278515	T	C	0.00937	MRM2	-	TRUE	AluSx1	SINE,Alu
chr3	5026729	C	T	0.00539	BHLHE40	+	FALSE
chr1	116609185	G	A	0.00187	SLC22A15	+	FALSE
chr1	11982544	T	C	4.37710E-05	KIAA2013	-	FALSE
chr5	34908535	T	C	0.00054	RAD1	-	FALSE	AluSp	SINE,Alu
chr8	61693942	G	A	0.00350	CHD7	+	FALSE
chr6	7289958	C	G	0.00893	SSR1	-	FALSE
chr2	86365817	A	G	0.00046	PTCD3	+	FALSE
chr1	200375848	C	T	0.00586	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	27204447	T	C	0.00513		.	FALSE	AluSg7	SINE,Alu
chr1	40539210	C	A	0.00185	PPT1	-	FALSE
chr1	79109352	T	G	0.00818	IFI44L	+	FALSE	LTR26	SINE,Alu
chr1	36068276	T	C	2.73596E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr14	75202372	A	G	8.84130E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr4	57326917	A	G	5.41162E-06	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	24086788	C	T	0.00040	TCEB3	+	FALSE
chr2	32535691	A	G	0.00023		.	FALSE	AluJb	SINE,Alu
chr1	155142927	A	G	0.00877	KRTCAP2	-	FALSE
chr17	65335291	T	C	0.00113	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	45976723	T	C	0.00340	MMACHC,PRDX1	+,-	FALSE
chr12	69160464	A	G	0.00041		.	FALSE	AluJb	SINE,Alu
chr3	75779619	T	A	0.00061	ZNF717	-	FALSE
chr1	36067749	T	C	0.00735	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	38327700	T	C	0.00510	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	25644747	T	C	0.00972	RSRP1,RHD	+,-	FALSE	AluSx1	SINE,Alu
chr1	27107950	G	A	0.00249	ARID1A	+	FALSE
chr1	10519048	T	C	0.00728		.	FALSE	AluSx3	SINE,Alu
chr15	91044382	A	G	0.00453	IQGAP1	+	FALSE
chr1	146649940	C	T	1.24118E-05	PDIA3P1	+	FALSE
chr5	174956494	T	A	2.51545E-05	SFXN1	+	FALSE
chr1	25894464	G	A	0.00527	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr7	99017241	C	A	0.00721	PTCD1,ATP5J2-PTCD1	-	FALSE
chr1	108728562	A	T	0.00228	SLC25A24	-	FALSE

RBP	TRIM56
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR309HXK
Platform	HiSeq
Pubmed ID	32252787

TRIM56 - Target Gene Network