RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr5	176916516	C	T	0.00093	PDLIM7	-	FALSE
chr2	208619479	A	G	0.00633	CCNYL1	+	TRUE	FAM	SINE,Alu
chr1	931807	G	A	0.00578		.	FALSE
chr1	156613632	G	A	0.00187	BCAN	+	FALSE
chr1	22929376	A	G	0.00378	EPHA8	+	FALSE
chr21	46935076	T	G	0.00164	SLC19A1	-	FALSE
chr1	53291425	A	G	0.00507	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr2	58387000	C	T	0.00027	VRK2,FANCL	+,-	FALSE
chr2	37331560	T	C	6.28398E-05		.	FALSE	AluJb	SINE,Alu
chr1	151554503	T	C	0.00619	TUFT1	+	FALSE
chr16	75479250	T	C	0.00568	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr1	6477671	G	T	0.00620	HES2	-	FALSE	AluSx	SINE,Alu
chr1	148561090	G	A	8.62202E-05	NBPF15	+	FALSE
chr15	102516512	G	A	0.00041	WASH3P	+	FALSE
chr19	18124755	A	G	0.00480	ARRDC2	+	FALSE
chr1	16724270	A	G	0.00914	SZRD1	+	FALSE
chr1	206566195	C	T	0.00706	SRGAP2	+	FALSE
chr1	1595538	T	C	0.00586	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr12	21654407	G	A	0.00654	RECQL	-	FALSE
chr1	44685732	T	C	9.79150E-12	DMAP1	+	FALSE
chr1	74672640	T	A	0.00011	FPGT-TNNI3K,FPGT	+	FALSE
chr1	567489	T	C	0.00119		.	FALSE
chr1	179829401	T	C	0.00118	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr5	65452100	G	T	0.00600	SREK1	+	FALSE	(TTTTTG)n	SINE,Alu
chr2	11053740	C	T	0.00402	KCNF1	+	FALSE
chr2	202083872	A	G	0.00022	CASP10	+	TRUE	AluSz	SINE,Alu
chr1	9160982	T	C	0.00350		.	FALSE	AluJb	SINE,Alu
chr1	38423182	G	C	0.00664	SF3A3	-	FALSE	AluJo	SINE,Alu
chr7	286402	A	G	1.78989E-09	FAM20C	+	FALSE
chr1	54691921	G	A	0.00909	SSBP3	-	FALSE
chr2	31491629	A	G	2.09863E-05		.	FALSE
chr1	1595527	T	C	0.00139	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr6	17951005	G	C	0.00381	KIF13A	-	FALSE
chr1	161559407	A	G	0.00376	FCGR2C	+	FALSE
chr1	15832543	T	C	0.00553	CASP9	-	FALSE
chr2	37328034	T	C	0.00046		.	FALSE
chr7	22983702	A	T	7.71363E-07	FAM126A	-	FALSE
chr1	1419678	A	G	0.00558	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	109351501	A	G	0.00921	STXBP3	+	FALSE
chr1	145513125	A	G	0.00274	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	6614230	G	A	0.00509	NOL9	-	FALSE
chr6	57034840	T	G	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr1	38327586	C	T	0.00198	INPP5B	-	FALSE	AluSx3	SINE,Alu
chr1	19543457	T	C	0.00569	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	87811100	A	T	0.00084	LMO4	+	FALSE
chr1	55060362	G	A	0.00246	ACOT11	+	FALSE
chr10	100177984	C	T	6.55965E-05	HPS1	-	FALSE
chr4	84525985	T	G	0.00041	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr2	36704033	T	A	0.00012	CRIM1	+	FALSE
chr1	67874697	T	C	0.00305	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	5837878	G	A	7.66453E-07	SOX11	+	FALSE
chr14	77581481	C	A	0.00997	CIPC	+	FALSE
chr19	1981317	T	A	0.00539	CSNK1G2	+	FALSE
chr1	36067752	T	C	1.27861E-08	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	20648140	A	C	6.93182E-06	RHOB	+	FALSE
chr1	65690461	G	A	0.00115	AK4	+	FALSE
chr1	93297605	C	G	0.00319	RPL5	+	FALSE
chr7	55433880	G	C	0.00778	LANCL2	+	FALSE
chr12	33021934	A	G	0.00035	PKP2	-	FALSE
chr2	20818286	A	C	0.00714	HS1BP3	-	FALSE
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chr1	25893928	T	A	0.00388	LDLRAP1	+	FALSE
chr5	79279310	T	A	0.00173	MTX3	-	FALSE
chr1	113672640	A	G	0.00629		.	FALSE	AluJb	SINE,Alu
chr22	16148871	T	G	0.00071		.	FALSE	Tigger1	SINE,Alu
chr1	70717293	G	A	0.00716	SRSF11	+	FALSE
chr14	103941379	C	A	0.00705	MARK3	+	FALSE
chr1	33087433	C	T	0.00687	ZBTB8OS	-	FALSE
chr2	28002602	C	A	0.00037	MRPL33	+	FALSE
chr3	148748199	C	A	3.38210E-05	HLTF	-	FALSE
chr1	60340527	G	A	0.00027	HOOK1	+	FALSE
chr6	13788387	T	C	0.00240	MCUR1	-	TRUE	AluSx	SINE,Alu
chr4	1228741	G	A	0.00095	CTBP1	-	FALSE
chr2	61764916	A	C	0.00361	XPO1	-	FALSE	(AC)n	SINE,Alu
chr5	95130803	T	C	0.00531	RHOBTB3	+	FALSE	AluSz	SINE,Alu
chr8	73958240	G	A	0.00093	TERF1	+	FALSE
chr1	145688983	A	G	0.00072	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	179044110	A	G	0.00176	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	53711735	G	C	0.00884	LRP8	-	FALSE
chr3	155660961	A	G	6.62819E-05		.	FALSE	AluSz	SINE,Alu
chr1	1662793	T	C	0.00489	SLC35E2	-	TRUE	AluY	SINE,Alu
chr1	16894497	C	T	0.00454	NBPF1	-	FALSE
chr11	119533724	C	G	0.00232	NECTIN1	-	FALSE
chr1	204524546	A	G	0.00054	MDM4	+	TRUE	AluY	SINE,Alu
chr2	32532809	A	G	0.00255		.	FALSE	AluSx1	SINE,Alu
chr12	56510697	G	A	0.00989	RPL41	+	FALSE
chr1	155695998	A	G	0.00078	DAP3	+	TRUE	AluSp	SINE,Alu
chr10	77807027	T	C	0.00089	C10orf11	+	FALSE
chr1	32638906	C	T	4.63739E-10	KPNA6	+	FALSE
chr1	200589813	C	A	1.20032E-05	KIF14	-	FALSE
chr1	19441410	G	A	7.84348E-05	UBR4	-	FALSE
chr1	154128839	G	T	0.00534	TPM3	-	FALSE
chr2	74375276	A	C	0.00328	BOLA3-AS1	+	FALSE
chr1	148577409	C	A	0.00897	NBPF15	+	FALSE
chr3	172115590	A	G	0.00355	FNDC3B	+	FALSE
chr12	69237509	A	G	1.55617E-05	MDM2	+	TRUE
chr6	52860422	G	C	0.00024		.	FALSE	7SK	SINE,Alu
chr1	22852880	G	C	0.00247	ZBTB40	+	FALSE
chr3	10192608	A	G	0.00245	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	6283260	T	C	0.00125	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	120612006	G	A	0.00930	NOTCH2	-	FALSE
chr1	33149486	A	G	0.00528	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr2	64069566	A	G	0.00075	UGP2	+	FALSE
chr1	9331101	A	G	0.00026	H6PD	+	FALSE	AluSx	SINE,Alu
chr2	202252539	G	A	0.00293	TRAK2	-	FALSE
chr2	9629953	C	A	0.00042	ADAM17	-	FALSE
chr1	54692334	T	C	5.22151E-05	SSBP3	-	FALSE	(T)n	SINE,Alu
chr1	33148789	A	G	0.00568	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	26755494	A	G	0.00874	LIN28A	+	TRUE	AluSc	SINE,Alu
chr2	61277775	A	G	0.00640	PEX13	+	TRUE	AluY	SINE,Alu
chr1	16576295	G	A	0.00139	FBXO42	-	FALSE	A-rich	SINE,Alu
chr1	67874697	T	C	0.00010	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr6	47592330	T	A	0.00830	CD2AP	+	FALSE
chr12	98943102	A	G	0.00250	TMPO	+	TRUE	AluSz	SINE,Alu
chr4	3242223	G	A	0.00073	HTT	+	FALSE
chr1	145100851	A	G	0.00066	NBPF20,SEC22B	+	FALSE	AluSg4	SINE,Alu
chr7	44917351	T	C	0.00338	PURB	-	TRUE	AluSz	SINE,Alu
chr2	37328034	T	C	6.77479E-07		.	FALSE
chr6	3022544	T	C	0.00440	HTATSF1P2	-	TRUE	AluJr	SINE,Alu
chr8	56985608	A	T	0.00077	RPS20	-	FALSE
chr5	149829068	C	T	0.00038	RPS14	-	FALSE
chr2	37330435	T	C	0.00401		.	FALSE	AluSq2	SINE,Alu
chr15	42503333	T	C	0.00120	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr1	16945504	C	T	0.00665	CROCCP2	-	FALSE
chr1	100489297	G	C	0.00669	SLC35A3	+	FALSE	AluSc	SINE,Alu
chr1	6948204	T	C	4.22429E-07	CAMTA1	+	FALSE	L2a	SINE,Alu
chr1	25169634	A	G	0.00843	CLIC4	+	FALSE
chr1	35817022	T	A	0.00072	ZMYM4	+	FALSE
chr5	140594470	G	A	0.00041	PCDHB13	+	FALSE
chr2	240954005	C	A	0.00021	NDUFA10	-	FALSE
chr6	150045926	T	C	0.00053	NUP43	-	TRUE	AluSq	SINE,Alu
chr3	47554503	T	G	0.00720	ELP6	-	FALSE	AluSx	SINE,Alu
chr2	54896395	A	C	0.00051	SPTBN1	+	FALSE
chr1	27205634	T	C	0.00025		.	FALSE	FLAM_A	SINE,Alu
chr1	145513017	A	G	0.00142	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr7	22765456	G	T	5.19964E-05	LOC541472	-	FALSE
chr1	16921146	T	C	0.00039	NBPF1	-	FALSE
chr3	194361676	C	T	0.00378	LSG1	-	FALSE	MSTA	SINE,Alu
chr20	54963756	T	C	0.00476	AURKA	-	TRUE	AluSq10	SINE,Alu
chr1	19542310	T	C	0.00581	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	1637531	A	G	0.00664	PXDN	-	FALSE
chr21	9908316	C	T	0.00719	TEKT4P2	-	FALSE
chr16	10625050	T	C	1.54421E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	1662694	T	C	0.00398	SLC35E2	-	TRUE	AluY	SINE,Alu
chr2	203426264	C	T	0.00948	BMPR2	+	FALSE
chr5	79923360	T	C	0.00727	DHFR	-	TRUE	AluJr	SINE,Alu
chr1	148558269	A	G	0.00538	NBPF15	+	FALSE	AluJb	SINE,Alu
chr1	206578650	G	C	0.00159	SRGAP2	+	FALSE
chr1	33961147	T	G	0.00236	ZSCAN20	+	FALSE
chr2	101622889	T	A	0.00022	RPL31	+	FALSE
chr14	50792837	A	G	0.00550	ATP5S	+	TRUE	AluSx	SINE,Alu
chr14	36784095	C	T	0.00866	MBIP	-	FALSE
chr1	17345245	C	T	0.00812	SDHB	-	FALSE
chr3	124948049	T	C	0.00069	ZNF148	-	TRUE
chr1	53291435	A	G	0.00790	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	27992825	G	A	0.00192	IFI6	-	FALSE
chr1	28573293	G	A	0.00059		.	FALSE
chr4	2940164	T	C	2.22609E-06	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr17	65334886	T	C	8.05380E-09	PSMD12	-	TRUE	AluSq	SINE,Alu
chr2	8996701	G	T	0.00063	MBOAT2	-	FALSE	AluSz	SINE,Alu
chr14	23441380	T	C	0.00102	AJUBA	-	TRUE	Eutr2	SINE,Alu
chr6	3021360	T	C	0.00321	HTATSF1P2	-	TRUE	AluJr4	SINE,Alu
chr7	138265310	A	G	0.00121	TRIM24	+	FALSE
chr3	33186087	A	G	1.22529E-05	CRTAP	+	FALSE	LTR16A1	SINE,Alu
chr2	128064422	C	T	0.00039	MAP3K2	-	FALSE
chr20	43954058	G	C	0.00876	SDC4	-	FALSE
chr4	13570943	T	G	2.17672E-09	BOD1L1	-	FALSE
chr1	10043504	A	G	0.00213	NMNAT1	+	FALSE	AluSx3	SINE,Alu
chr6	13789467	T	C	0.00019	MCUR1	-	TRUE	AluSg	SINE,Alu
chr19	45406538	C	G	0.00119	TOMM40	+	FALSE
chr1	32479707	G	A	0.00000	KHDRBS1	+	FALSE
chr2	105881486	A	G	0.00042	TGFBRAP1	-	FALSE
chr1	24935369	A	G	0.00454	NCMAP	+	TRUE	AluJb	SINE,Alu
chr4	10076860	G	A	1.69987E-09	WDR1	-	FALSE
chr2	85773494	T	C	0.00099	GGCX	-	TRUE	AluY	SINE,Alu
chr4	152020779	G	T	0.00925	RPS3A	+	FALSE
chr2	217366192	T	A	0.00067		.	FALSE
chr11	6478619	G	A	0.00656	TRIM3	-	FALSE
chr1	40539201	A	G	0.00028	PPT1	-	FALSE
chr1	231377081	C	T	6.17358E-06	GNPAT	+	FALSE
chr5	72801321	T	A	0.00427	BTF3	+	FALSE
chr12	72096318	A	G	0.00547	TMEM19	+	TRUE	AluSz6	SINE,Alu
chr17	57279253	A	G	1.08987E-07	PRR11	+	TRUE	AluSq2	SINE,Alu
chr3	48787046	T	C	0.00699	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr11	44641025	G	A	0.00850	CD82	+	FALSE
chr2	196602326	T	G	0.00503	SLC39A10	+	FALSE
chr4	2940364	T	C	0.00718	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	54692341	T	C	0.00045	SSBP3	-	FALSE	(T)n	SINE,Alu
chr8	12052756	T	C	0.00984		.	FALSE
chr1	12058878	T	C	0.00110	MFN2	+	FALSE
chr7	144060286	A	G	0.00674	ARHGEF5	+	FALSE
chr3	12882839	C	G	0.00118	RPL32	-	FALSE
chr1	1252510	T	C	1.62601E-05	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	16932429	C	G	0.00823	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	91486838	G	C	0.00370	ZNF644	-	FALSE
chr3	194789330	G	T	0.00699	XXYLT1	-	FALSE	AluJr	SINE,Alu
chr7	120740103	G	T	0.00601	CPED1	+	FALSE
chr19	59093999	A	G	0.00018	CENPBD1P1	+	TRUE	AluY	SINE,Alu
chr1	162494683	G	T	0.00269	UHMK1	+	FALSE	AluSg4	SINE,Alu
chr1	70718273	A	T	0.00256		.	FALSE
chr1	10517950	G	C	0.00449		.	FALSE
chr1	28836048	G	A	0.00035	SNHG3,RCC1	+	FALSE	AluSx4	SINE,Alu
chr6	29857113	C	A	0.00582		.	FALSE
chr1	16842064	A	C	0.00079		.	FALSE	MER41E	SINE,Alu
chr1	210029539	G	A	0.00231	DIEXF	+	FALSE
chr1	27202959	T	C	0.00653		.	FALSE	AluSq2	SINE,Alu
chr1	206516261	C	T	0.00020	SRGAP2	+	FALSE
chr1	10520819	T	C	0.00034	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	1647814	T	C	7.10450E-06	CDK11B,CDK11A	-	FALSE
chr1	168213516	A	G	0.00233		.	FALSE	AluSx1	SINE,Alu
chr1	16892918	T	C	0.00590	NBPF1	-	FALSE
chr2	118854086	G	C	0.00066	INSIG2	+	FALSE
chr1	27205214	T	C	0.00048		.	FALSE	AluSc	SINE,Alu
chr3	185009713	G	T	0.00106	MAP3K13	+	FALSE
chr1	114939633	G	A	0.00188	TRIM33	-	FALSE
chr5	140564263	C	T	0.00475	PCDHB16	+	FALSE
chr2	187544222	A	G	0.00411	ITGAV	+	FALSE
chr3	196079280	T	C	0.00614		.	FALSE	AluSx	SINE,Alu
chr1	46075663	A	G	0.00068	NASP	+	TRUE	AluSx4	SINE,Alu
chr6	150045755	T	C	0.00041	NUP43	-	TRUE	AluSq	SINE,Alu
chr1	19585772	G	A	0.00576	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr1	27731933	C	A	1.77427E-09	WASF2	-	FALSE
chr1	168218543	A	G	7.78857E-07		.	FALSE	AluSz	SINE,Alu
chr5	56177872	A	G	0.00618	MAP3K1	+	TRUE	(CAA)n	SINE,Alu
chr1	109475543	A	G	0.00325	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	27180861	C	T	0.00721	ZDHHC18	+	FALSE
chr9	139698779	C	G	0.00106	CCDC183,CCDC183-AS1	+,-	FALSE	L2b	SINE,Alu
chr2	11781593	G	T	0.00551	GREB1	+	FALSE
chr5	52389817	T	A	0.00868	ITGA2	+	FALSE
chr17	42113064	A	G	0.00014	LSM12	-	FALSE	(A)n	SINE,Alu
chr1	87572817	C	T	0.00514	HS2ST1	+	FALSE
chr3	52237970	C	T	0.00017	ALAS1	+	FALSE
chr1	53712727	C	T	0.00313	LRP8	-	FALSE
chr2	135208352	T	G	0.00259	MGAT5	+	FALSE
chr3	63996227	G	T	0.00114	PSMD6-AS2,PSMD6	+,-	FALSE
chr6	52365328	T	G	0.00983	TRAM2	-	FALSE	(T)n	SINE,Alu
chr6	2833055	G	A	0.00015	SERPINB1	-	FALSE	AluSx	SINE,Alu

RBP	SND1
Knock-Method	shRNA
RBP Family	SNase
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR398LZW
Platform	HiSeq
Pubmed ID	32252787

SND1 - Target Gene Network