RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr12	46577921	G	T	0.00306	SLC38A1	-	FALSE
chr1	86852362	C	A	0.00073	ODF2L	-	FALSE	AluSz	SINE,Alu
chr17	909317	G	A	0.00766	ABR	-	FALSE
chr1	25894471	G	A	0.00778	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	10517659	T	C	0.00513		.	FALSE	AluSx1	SINE,Alu
chr1	38174665	G	A	0.00339	CDCA8	+	FALSE
chr15	52203664	A	C	0.01000	TMOD3	+	FALSE
chr4	165998692	T	C	0.00568	TMEM192	-	TRUE	AluSg	SINE,Alu
chr15	42861741	A	G	0.00200	HAUS2	+	TRUE	AluJb	SINE,Alu
chr1	3730332	T	C	9.76659E-06	CEP104	-	TRUE	AluSx3	SINE,Alu
chr16	88767769	G	C	0.00420	RNF166	-	FALSE
chr1	10518688	T	C	0.00341		.	FALSE	AluSx1	SINE,Alu
chr6	24720539	G	C	0.00225		.	FALSE
chr1	24128467	C	T	0.00086	HMGCL	-	FALSE
chr1	1595074	T	C	0.00296	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr2	69690885	T	C	0.00970	AAK1	-	TRUE	AluSx3	SINE,Alu
chr5	177311217	T	C	0.00840	LOC728554	+	FALSE	A-rich	SINE,Alu
chr19	11256725	T	C	0.00096	SPC24	-	TRUE	AluJr4	SINE,Alu
chr5	170837892	C	A	0.00725		.	FALSE
chr1	19543247	T	C	5.23836E-05	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	53289547	A	G	0.00352	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr4	663908	A	G	0.00320	PDE6B	+	FALSE
chr1	116237273	A	G	0.00309	VANGL1	+	FALSE
chr11	119533724	C	G	0.00232	NECTIN1	-	FALSE
chr1	110949720	C	T	0.00666	LAMTOR5	-	FALSE	L1ME4b	SINE,Alu
chr1	31732603	A	C	0.00148	SNRNP40	-	FALSE
chr3	196046746	T	C	0.00513	TM4SF19-TCTEX1D2,TM4SF19-AS1	+,-	FALSE	AluSc5	SINE,Alu
chr1	3371371	C	G	0.00844	ARHGEF16	+	FALSE
chr16	10626630	T	C	0.00051	EMP2	-	FALSE	(T)n	SINE,Alu
chr2	88913273	G	C	0.00152	EIF2AK3	-	FALSE
chr1	47142539	T	A	0.00066	EFCAB14-AS1,EFCAB14	+,-	FALSE
chr1	16892256	T	C	0.00370	NBPF1	-	FALSE
chr4	2940265	T	C	4.71601E-06	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr12	56510697	G	A	0.00055	RPL41	+	FALSE
chr1	932005	A	G	0.00110		.	FALSE
chr1	145509493	A	G	0.00264	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	1593750	A	G	0.00191	CDK11B,SLC35E2B	-	FALSE
chr14	76662778	C	T	0.00261	GPATCH2L	+	FALSE
chr7	129592510	G	T	0.00165	UBE2H	-	FALSE
chr1	209796329	T	A	0.00136	LAMB3	-	FALSE
chr2	11728089	C	T	0.00352	GREB1	+	FALSE	AluSz	SINE,Alu
chr8	11701343	T	C	0.00280	CTSB	-	TRUE	AluSx1	SINE,Alu
chr3	121154974	T	C	0.00183	POLQ	-	FALSE
chr5	126113463	A	C	0.00392	LMNB1	+	FALSE	(CGACGCG)n	SINE,Alu
chr16	10625437	T	C	0.00028	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	25893928	T	A	0.00388	LDLRAP1	+	FALSE
chr3	40503557	T	C	0.00487	RPL14	+	FALSE
chr1	6282420	T	C	0.00779	ICMT	-	TRUE	AluSz	SINE,Alu
chr12	120898661	A	G	2.17580E-05	GATC	+	TRUE	AluY	SINE,Alu
chr17	65335430	T	C	0.00019	PSMD12	-	TRUE	AluSx	SINE,Alu
chr4	53364	G	A	0.00714	ZNF718,ZNF595	+	FALSE
chr7	140153699	C	A	0.00075	MKRN1	-	FALSE
chr1	40213628	A	G	0.00058	PPIE	+	TRUE	FRAM	SINE,Alu
chr4	17803537	T	C	7.44979E-05	DCAF16	-	TRUE	AluY	SINE,Alu
chr7	128144035	A	G	0.00054		.	FALSE	AluSq2	SINE,Alu
chr7	21941587	G	C	5.72060E-05	CDCA7L	-	FALSE
chr1	214531079	A	G	0.00124	PTPN14	-	FALSE
chr1	10490539	G	C	0.00134	APITD1,APITD1-CORT	+	FALSE
chr3	44791355	T	C	0.00468	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr10	79570873	G	T	0.00292	DLG5	-	FALSE
chr1	225974581	A	G	0.00732	SRP9	+	TRUE	AluJr	SINE,Alu
chr7	44841239	T	A	0.00199	PPIA	+	FALSE
chr1	36067784	T	C	1.34898E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr19	39433142	T	A	0.00215	FBXO17	-	FALSE	AluJb	SINE,Alu
chr15	90815787	A	G	0.00055		.	FALSE	FRAM	SINE,Alu
chr5	125961204	A	G	0.00196	PHAX	+	TRUE	AluSz	SINE,Alu
chr15	33064742	C	G	0.00215	FMN1	-	FALSE
chr1	168218543	A	G	0.00547		.	FALSE	AluSz	SINE,Alu
chr2	38522138	G	T	0.00769	ATL2	-	FALSE
chr13	52602919	A	C	0.00117	ALG11,UTP14C	+	FALSE
chr1	112266787	G	T	0.00642	FAM212B	-	FALSE
chr15	41597574	A	G	2.24597E-05		.	FALSE	AluSz6	SINE,Alu
chr1	23636031	T	A	0.00965	HNRNPR	-	FALSE
chr1	110300588	C	T	0.00232	EPS8L3	-	FALSE
chr1	231154918	G	T	0.00022	FAM89A	-	FALSE	(T)n	SINE,Alu
chr1	1573181	C	A	0.00038	CDK11B	-	FALSE
chr6	150047423	T	C	0.00688	NUP43	-	TRUE	AluSc	SINE,Alu
chr12	27953267	T	G	0.00233	KLHL42	+	FALSE
chr1	1459332	G	A	1.33172E-08	ATAD3A	+	FALSE
chr1	9328094	A	G	0.00107	H6PD	+	TRUE	AluJr	SINE,Alu
chr17	45761110	G	T	0.00816		.	FALSE
chr1	148004307	T	C	0.00935	NBPF8	-	FALSE
chr1	988503	A	T	8.91206E-06	AGRN	+	FALSE
chr1	86049391	T	A	0.00019	CYR61	+	FALSE
chr1	204525667	A	G	3.94227E-05	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	6582353	T	C	0.00121	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	59127086	G	A	0.00051	MYSM1	-	FALSE
chr1	144606963	G	T	0.00080	NBPF20	+	FALSE
chr1	38327586	C	T	0.00198	INPP5B	-	FALSE	AluSx3	SINE,Alu
chr16	84778690	C	T	0.00799	USP10	+	FALSE
chr1	145369709	A	G	0.00607	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	86049361	A	G	0.00036	CYR61	+	FALSE
chr1	204096630	T	C	0.00471	SOX13	+	FALSE
chr1	26188238	G	A	0.00148	PAQR7	-	FALSE	AluSp	SINE,Alu
chr2	174828621	A	C	0.00315	SP3	-	FALSE
chr16	90037828	G	A	0.00029	CENPBD1	-	FALSE	Tigger12	SINE,Alu
chr1	148594563	G	T	0.00169	NBPF15	+	FALSE
chrX	77083981	T	C	0.00647	MAGT1	-	TRUE	AluSz	SINE,Alu
chr8	128944712	A	C	0.00033	PVT1	+	FALSE
chr1	19513110	G	A	0.00189	UBR4	-	FALSE
chr1	94335330	A	T	0.00366	DNTTIP2	-	FALSE
chr7	924602	A	G	0.00195	GET4	+	TRUE	AluJb	SINE,Alu
chr1	206516261	C	T	0.00179	SRGAP2	+	FALSE
chr17	34942575	G	A	0.00374	GGNBP2	+	FALSE	A-rich	SINE,Alu
chr6	116600774	C	G	0.00180	DSE,TSPYL1	+,-	FALSE
chr21	33974088	A	G	0.00057	C21orf59	-	FALSE
chr6	31324643	G	C	5.95617E-06		.	FALSE
chr1	25894466	A	C	0.00783	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr4	57327058	A	G	0.00129	PAICS	+	TRUE	AluSx1	SINE,Alu
chr2	91805938	A	G	0.00084		.	FALSE	MLT1H1	SINE,Alu
chr1	160967854	T	C	0.00150	F11R	-	TRUE	AluSp	SINE,Alu
chr3	169492101	C	T	0.00402	MYNN	+	FALSE
chr2	201842323	T	C	0.00254	FAM126B	-	TRUE	AluJb	SINE,Alu
chr1	36067760	T	C	0.00258	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	16910172	G	A	0.00023	NBPF1	-	FALSE
chr1	144930940	T	C	6.15272E-05	NBPF20,PDE4DIP	+,-	FALSE
chr1	19543459	T	C	0.00395	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	46076481	A	G	0.00144	NASP	+	TRUE	AluSx	SINE,Alu
chr1	10520174	T	C	0.00158		.	FALSE	AluSx	SINE,Alu
chr1	144618144	A	G	0.00725	NBPF20,NBPF9	+	FALSE
chr15	83826212	C	T	0.00278	HDGFRP3	-	FALSE	(CTT)n	SINE,Alu
chr1	153533813	A	T	0.00451	S100A2	-	FALSE
chr19	42376710	A	G	1.82395E-05		.	FALSE	AluSp	SINE,Alu
chr3	15113681	T	C	0.00048	RBSN	-	TRUE	AluSz6	SINE,Alu
chrX	77083897	T	C	0.00184	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	78414329	G	A	0.00922	FUBP1	-	FALSE	A-rich	SINE,Alu
chr2	86249961	T	C	0.00292	LOC90784	-	TRUE	AluJr	SINE,Alu
chr3	33186087	A	G	1.22529E-05	CRTAP	+	FALSE	LTR16A1	SINE,Alu
chr1	54692334	T	C	5.22151E-05	SSBP3	-	FALSE	(T)n	SINE,Alu
chr17	10578246	A	G	0.00093		.	FALSE
chr16	88785189	T	C	0.00636	PIEZO1	-	TRUE	AluJr	SINE,Alu
chr1	19542401	T	C	0.00071	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	150446056	G	A	0.00945	RPRD2	+	FALSE	(A)n	SINE,Alu
chr1	6283439	T	C	0.00786	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	93602673	C	T	0.00252	MTF2	+	FALSE
chr11	111431662	T	A	0.00204	LAYN	+	FALSE
chr1	24296869	G	T	0.00505		.	FALSE	AluSg	SINE,Alu
chr1	26755136	A	G	0.00279	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr9	139299673	G	C	0.00710	SDCCAG3	-	FALSE
chr19	21302045	A	G	0.00020	ZNF714	+	TRUE	AluSg4	SINE,Alu
chr16	10623660	T	C	0.00074	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	113243096	G	T	0.00114	MOV10	+	FALSE
chr8	6263057	A	C	0.00419	LOC100287015	-	FALSE
chr7	100957851	T	C	0.00028	LOC101927746,IFT22	+,-	FALSE	MADE1	SINE,Alu
chr1	200375846	G	T	0.00061	ZNF281	-	FALSE	(T)n	SINE,Alu
chr7	22983702	A	T	7.71363E-07	FAM126A	-	FALSE
chr1	6283434	T	C	0.00285	ICMT	-	TRUE	AluSx3	SINE,Alu
chr10	72648336	C	T	0.00461	PCBD1	-	FALSE	(GGCCG)n	SINE,Alu
chr1	40705200	G	A	3.20116E-08	RLF	+	FALSE
chr8	30535975	T	C	5.05710E-05	GSR	-	TRUE	AluJr	SINE,Alu
chr2	171634349	T	A	0.00104	ERICH2	+	FALSE
chr9	37503490	A	G	0.00612	POLR1E	+	TRUE	AluJb	SINE,Alu
chr1	45975345	A	G	0.00614	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr3	40578935	A	G	0.00063	ZNF621	+	TRUE	AluJr	SINE,Alu
chr1	145688668	A	T	0.00987	NBPF20,NBPF10,RNF115	+	FALSE
chr3	179117241	T	C	0.00133	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	6279950	A	G	0.00541	RNF207	+	TRUE	AluSp	SINE,Alu
chr1	145513112	A	G	0.00080	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	38326774	T	C	0.00664	INPP5B	-	TRUE	AluJr	SINE,Alu
chr7	17384395	A	G	1.20082E-06	AHR	+	TRUE	AluSx	SINE,Alu
chr15	52202957	G	T	0.00094	TMOD3	+	FALSE	(T)n	SINE,Alu
chr7	2767939	T	C	0.00028	AMZ1,GNA12	+,-	FALSE
chr1	52375424	T	C	0.00109	RAB3B	-	FALSE
chr1	228334277	C	T	0.00256	GUK1	+	FALSE
chr3	32567573	G	A	0.00320	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr15	43698008	C	T	0.00175	TUBGCP4	+	FALSE	AluSp	SINE,Alu
chr1	117532790	C	T	0.00981	PTGFRN	+	FALSE
chr15	41593352	A	G	0.00083		.	FALSE	AluSz6	SINE,Alu
chr1	211920314	T	C	0.00938	LPGAT1	-	FALSE
chr6	150047370	T	C	0.00154	NUP43	-	TRUE	AluSc	SINE,Alu
chr3	186288565	A	G	0.00680	DNAJB11	+	FALSE
chr4	3514695	A	G	1.35580E-12	LRPAP1	-	FALSE
chr1	24295888	T	A	0.00240		.	FALSE
chr1	1686040	G	T	0.00543	NADK	-	FALSE
chr1	19542463	T	C	0.00060	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr7	64441632	A	T	0.00038	ZNF117	-	FALSE
chr1	27992825	G	A	0.00012	IFI6	-	FALSE
chr3	195461650	A	G	0.00062		.	FALSE	AluSz	SINE,Alu
chr22	17129526	A	G	0.00485	TPTEP1	+	TRUE	AluSz	SINE,Alu
chr5	149823795	A	T	0.00261	RPS14	-	FALSE
chr3	73116437	C	G	1.00237E-05	PPP4R2	+	FALSE
chr3	15113519	C	T	0.00108	RBSN	-	FALSE
chr1	16889642	T	C	6.70250E-05	NBPF1	-	TRUE
chr1	15832543	T	C	0.00553	CASP9	-	FALSE
chr1	15844615	A	G	0.00792	CASP9	-	FALSE
chr1	16945570	A	G	0.00251	CROCCP2	-	FALSE
chr1	16912099	G	C	0.00928	NBPF1	-	FALSE
chrX	77083645	T	C	4.59952E-07	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	40214333	A	G	0.00112	PPIE	+	TRUE	AluSq2	SINE,Alu
chr1	10519932	T	C	0.00710		.	FALSE	AluJr	SINE,Alu
chr8	40011786	C	A	0.00196	C8orf4	+	FALSE
chr1	92977228	T	C	0.00206	EVI5	-	TRUE	AluJr	SINE,Alu
chr1	10517306	T	C	0.00102		.	FALSE	AluJr	SINE,Alu
chr2	85773689	T	C	0.00104	GGCX	-	TRUE	AluSx1	SINE,Alu
chr1	46093161	C	T	0.00628	GPBP1L1	-	FALSE
chr12	124105948	C	T	0.00778	EIF2B1	-	FALSE
chr1	16926980	T	C	0.00062	NBPF1	-	FALSE
chr1	65720330	A	C	0.00211		.	FALSE
chr1	55319888	T	G	0.00000	DHCR24	-	FALSE
chr5	112350098	C	T	7.36383E-05	DCP2	+	FALSE
chr3	44790781	T	C	0.00289	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	16060892	C	T	0.00946	PLEKHM2	+	FALSE
chr3	10193796	A	G	0.00493	VHL	+	TRUE	AluSx	SINE,Alu
chr7	6501832	A	C	0.00175	KDELR2	-	FALSE
chr3	57126615	T	C	0.00460	IL17RD	-	FALSE	AluY	SINE,Alu
chr1	19595137	C	T	0.00085	AKR7L	-	FALSE
chr7	138740037	G	C	0.00598	ZC3HAV1	-	FALSE
chrX	77083982	T	C	0.00086	MAGT1	-	TRUE	AluSz	SINE,Alu
chr3	88101339	T	C	0.00531	CGGBP1	-	FALSE
chr5	151041871	C	A	0.00165	SPARC	-	FALSE
chr1	36068210	T	C	0.00178	PSMB2	-	TRUE	AluSc	SINE,Alu
chr2	675831	G	T	0.00731	TMEM18	-	FALSE
chr7	44618448	A	G	0.00962	TMED4	-	FALSE	AluSq2	SINE,Alu
chr1	209602381	G	A	0.00057	MIR205HG	+	FALSE	AluJb	SINE,Alu
chr10	73994158	A	G	0.00110	ANAPC16	+	TRUE	AluJr	SINE,Alu
chr1	12677547	G	A	0.00543	DHRS3	-	FALSE	(A)n	SINE,Alu
chr1	569983	G	A	0.00076		.	FALSE
chr1	47184569	G	C	0.00027	EFCAB14	-	FALSE
chr1	24086807	T	C	0.00352	TCEB3	+	FALSE	(T)n	SINE,Alu
chr1	92862764	A	G	0.00415		.	FALSE	AluJr	SINE,Alu
chr1	63924020	C	T	0.00945	ITGB3BP	-	FALSE
chr2	70452144	T	G	0.00191	TIA1	-	FALSE
chr6	90344222	T	C	0.00451	LYRM2	-	TRUE	AluJo	SINE,Alu
chr19	53155567	T	C	0.00137	ZNF83	-	TRUE	AluSg	SINE,Alu
chr19	21304019	A	G	0.00111	ZNF714	+	TRUE	AluY	SINE,Alu
chr1	3703611	A	C	0.00208	LRRC47	-	FALSE
chr1	226172221	T	C	0.00030	SDE2	-	FALSE	L1MEf	SINE,Alu
chr14	53243438	T	C	7.89901E-12	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr7	65619242	A	G	0.00545	CRCP	+	TRUE	AluSz6	SINE,Alu
chr1	154321623	G	A	0.00782	ATP8B2	+	FALSE
chr4	13604034	T	C	3.45500E-11	BOD1L1	-	FALSE
chr1	9324213	C	T	0.00063	H6PD	+	FALSE
chr1	237065583	G	T	0.00959	MTR	+	FALSE
chr1	184762524	T	C	0.00260	FAM129A	-	TRUE	AluSz	SINE,Alu
chr7	17384440	A	G	0.00373	AHR	+	TRUE	AluSx	SINE,Alu
chr17	49041732	T	C	0.00135	SPAG9	-	TRUE	AluSx	SINE,Alu
chr1	1653093	A	G	0.00036	CDK11B,CDK11A	-	FALSE	L2	SINE,Alu
chr6	153292178	C	T	0.00783	FBXO5	-	FALSE
chr2	170103351	G	T	0.00139	LRP2	-	FALSE
chr6	150046734	T	C	0.00248	NUP43	-	FALSE
chr1	145273345	T	C	0.00640	NBPF20,NOTCH2NL	+	FALSE
chr1	36522460	A	G	0.00407		.	FALSE	AluSc	SINE,Alu
chr1	87811070	G	A	0.00396	LMO4	+	FALSE
chr12	133298019	A	G	2.77684E-05	PGAM5	+	TRUE	AluJo	SINE,Alu
chr1	28824041	T	A	0.00872	PHACTR4	+	FALSE	AluSx	SINE,Alu
chr4	165998654	T	C	0.00564	TMEM192	-	TRUE	AluSg	SINE,Alu
chr3	45721905	A	G	0.00238	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	145689812	A	G	0.00431	NBPF20,NBPF10	+	TRUE	AluJb	SINE,Alu
chr9	128729385	C	A	0.00170	PBX3	+	FALSE
chr1	46806550	C	T	0.00105	NSUN4	+	FALSE
chr1	65299564	G	T	0.00664	JAK1	-	FALSE
chr8	71550832	T	C	0.00234	LACTB2-AS1,LACTB2	+,-	FALSE
chr1	145688943	A	G	0.00492	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	10517314	T	C	0.00617		.	FALSE	AluJr	SINE,Alu
chr1	28661656	A	G	0.00319	MED18	+	TRUE	AluSg	SINE,Alu
chr9	124094998	T	G	0.00299	GSN	+	FALSE	(TG)n	SINE,Alu
chr3	195243024	C	A	0.00729	PPP1R2	-	FALSE
chr12	64842920	A	G	2.84792E-05		.	FALSE	AluSz	SINE,Alu
chr5	148873854	A	G	0.00453		.	FALSE
chr1	114940228	C	T	0.00734	TRIM33	-	FALSE	(T)n	SINE,Alu
chr4	17628548	A	G	0.00991		.	FALSE	AluSz	SINE,Alu
chr3	182614493	T	C	0.00036	ATP11B	+	FALSE
chr5	175816758	T	A	0.00528		.	FALSE
chr2	183622547	T	G	0.00346	DNAJC10	+	FALSE
chr1	150703860	T	C	0.00222	CTSS	-	TRUE	AluSx	SINE,Alu
chr1	59147926	T	C	0.00601	MYSM1	-	FALSE
chr11	18552273	C	T	0.00243		.	FALSE
chr1	113001409	C	T	2.24539E-06	CTTNBP2NL	+	FALSE	AluJr	SINE,Alu
chr1	10520067	T	C	2.08449E-05		.	FALSE	AluSx	SINE,Alu
chr2	190636411	C	G	0.00870	ORMDL1	-	FALSE
chr1	1419700	A	G	0.00464	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	32637063	C	T	0.00071	KPNA6	+	FALSE
chr1	237063504	A	G	0.00900	MTR	+	FALSE	L1ME3F	SINE,Alu
chr1	47184539	C	T	0.00425	EFCAB14	-	FALSE
chr4	2940397	T	C	0.00010	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	32661600	C	T	0.00584	TXLNA	+	FALSE	(T)n	SINE,Alu
chr1	89648329	T	C	0.00093	GBP4	-	TRUE	AluYg6	SINE,Alu
chr8	41798912	T	C	0.00892	KAT6A	-	FALSE
chr1	39470978	T	A	0.00378	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr10	94414146	A	G	0.00911	KIF11	+	FALSE
chr1	86117191	T	C	0.00987	ZNHIT6	-	TRUE	AluSg	SINE,Alu
chr16	81064629	A	G	6.04166E-07	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	10519973	T	C	0.00586		.	FALSE	AluJr	SINE,Alu
chr1	19545147	T	G	0.00510	LOC101927895,EMC1	+,-	FALSE
chr6	114181220	A	G	0.00265	MARCKS	+	FALSE
chr5	34906156	T	C	2.52494E-05	RAD1	-	TRUE	AluSx1	SINE,Alu
chr2	206983298	T	C	0.00811		.	FALSE	AluJb	SINE,Alu
chr1	89447882	A	G	0.00103	KYAT3,RBMXL1	-	FALSE
chr12	53936878	G	T	0.00036	ATF7	-	FALSE
chr2	86249840	T	C	0.00482	LOC90784	-	TRUE	AluJr	SINE,Alu
chr3	191075902	C	T	1.38271E-08	CCDC50	+	FALSE
chr11	44641025	G	A	0.00850	CD82	+	FALSE
chr3	197612334	A	G	0.00070		.	FALSE	AluSp	SINE,Alu
chr15	43767774	G	C	0.00057	TP53BP1	-	FALSE
chr1	154128831	G	T	0.00183	TPM3	-	FALSE
chr1	246829873	G	A	0.00342	CNST	+	FALSE
chr1	12628188	T	C	6.05765E-06	DHRS3	-	FALSE
chr4	25236017	T	C	2.76644E-09	PI4K2B	+	FALSE
chr4	57326291	A	G	0.00017	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	47716042	A	T	0.00574	STIL	-	FALSE
chr1	205687354	T	C	0.00012	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr9	136335345	G	A	0.00490	CACFD1	+	FALSE	(TG)n	SINE,Alu
chr1	90496713	A	G	0.00677	ZNF326	+	FALSE
chr15	85190470	G	T	8.70862E-05	WDR73	-	FALSE
chr1	1595604	A	T	0.00233	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr7	152551581	T	A	0.00313	ACTR3B	+	FALSE
chr2	191799592	A	G	0.00021	GLS	+	TRUE
chrX	24095285	A	G	0.00135	EIF2S3	+	TRUE	AluSx	SINE,Alu
chr1	145512074	A	G	0.00084	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	184661773	G	T	0.00082	EDEM3	-	FALSE
chr3	121435624	C	T	0.00063	GOLGB1	-	FALSE
chr1	6473294	A	G	0.00013		.	FALSE	Arthur1C	SINE,Alu
chr1	92865902	A	G	0.00040		.	FALSE	AluJr	SINE,Alu
chr1	16890500	G	A	0.00030	NBPF1	-	FALSE
chr3	124774432	T	G	0.00754	HEG1	-	FALSE
chr1	116609833	G	A	0.00773	SLC22A15	+	FALSE
chr1	26449340	G	A	0.00711	PDIK1L	+	FALSE
chr12	72096335	A	G	1.07858E-05	TMEM19	+	FALSE	AluSz6	SINE,Alu
chr1	117530477	G	A	0.00223	PTGFRN	+	FALSE
chr13	50102992	T	C	0.00956	SETDB2-PHF11,PHF11	+	FALSE	L2a	SINE,Alu
chr1	46075604	A	G	0.00365	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	21795388	A	G	0.00732	NBPF3	+	FALSE
chr1	32373838	T	G	0.00376	PTP4A2	-	FALSE	(T)n	SINE,Alu
chrM	5265	C	A	0.00026		.	FALSE
chr1	65900357	G	T	0.00851	LEPR,LEPROT	+	FALSE
chr2	105883650	T	G	0.00086	TGFBRAP1	-	FALSE
chr1	227211026	C	G	0.00373	CDC42BPA	-	FALSE
chr2	208619320	A	G	0.00339	CCNYL1	+	FALSE	EutTc1-N1	SINE,Alu
chr1	148010973	C	T	0.00045	NBPF8	-	FALSE
chr2	1652354	G	A	0.00000	PXDN	-	FALSE
chr2	120022385	C	T	0.00184	STEAP3	+	FALSE
chr4	52888026	A	C	0.00677	SGCB	-	FALSE
chr1	10521254	T	C	0.00041	DFFA	-	TRUE	AluY	SINE,Alu
chr1	52253793	C	T	0.00966	OSBPL9	+	FALSE
chr1	118071289	A	G	0.00023		.	FALSE
chr1	155161704	G	C	0.00034	MUC1	-	FALSE
chr15	41591451	A	G	1.78515E-09	OIP5-AS1	+	TRUE	AluSx	SINE,Alu
chr3	196080528	T	C	0.00700	UBXN7	-	TRUE	AluSx	SINE,Alu
chr2	223807974	A	T	0.00593	ACSL3	+	FALSE
chr1	162497663	G	A	0.00365	UHMK1	+	FALSE
chr17	7485341	C	A	0.00701	CD68,LOC100996842	+,-	FALSE
chr6	34254565	A	T	0.00617		.	FALSE	(A)n	SINE,Alu
chr6	42855962	A	G	0.00781	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	70611296	A	T	0.00061	LRRC40	-	FALSE
chr1	569492	T	C	0.00336		.	FALSE
chr3	100083427	T	A	0.00456	TOMM70	-	FALSE	FAM	SINE,Alu
chr1	53288870	A	G	0.00501	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	158067060	T	A	0.00778	KIRREL	+	FALSE
chr1	154128333	T	A	0.00204	TPM3	-	FALSE
chr1	145369480	A	G	7.08400E-07	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr12	88454641	A	T	0.00753	CEP290	-	FALSE
chr19	57804719	A	C	0.00361	ZNF460	+	FALSE
chr7	20177519	T	C	0.00885	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr1	19238562	G	A	3.36880E-06	IFFO2	-	FALSE
chr1	38463504	C	T	0.00068	FHL3	-	FALSE
chr3	10193475	A	G	0.00295	VHL	+	TRUE	AluJr	SINE,Alu
chr1	116235179	G	T	0.00187	VANGL1	+	FALSE
chr1	1597423	C	T	1.10134E-13	CDK11B,SLC35E2B	-	FALSE
chr2	198368113	T	A	1.78788E-05	HSPE1,HSPE1-MOB4	+	FALSE
chr1	117532509	C	A	0.00521	PTGFRN	+	FALSE
chr1	11346336	A	G	0.00288	UBIAD1	+	FALSE
chr12	124146597	A	G	0.00121	GTF2H3	+	TRUE	AluSq2	SINE,Alu
chr1	144607285	A	C	0.00208	NBPF20	+	FALSE
chr5	147793406	A	G	0.00323	FBXO38	+	FALSE
chr3	22424406	A	T	0.00760		.	FALSE
chr11	118880839	A	G	0.00922	CCDC84	+	TRUE	AluJb	SINE,Alu
chr1	10517635	T	C	7.30839E-07		.	FALSE	AluSx1	SINE,Alu
chr1	11084103	T	A	0.00118	TARDBP	+	FALSE
chr17	40466890	G	T	0.00260	STAT3	-	FALSE	AluSc8	SINE,Alu
chr3	156259314	T	C	2.71784E-05	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	144521099	A	G	0.00196	NBPF20	+	FALSE
chr7	21941589	T	A	0.00535	CDCA7L	-	FALSE
chr5	180665123	G	A	0.00259	RACK1	-	FALSE
chr1	154128837	G	T	0.00032	TPM3	-	FALSE
chr1	182993025	C	T	0.00490	LAMC1	+	FALSE
chr10	60047612	A	G	0.00015	CISD1	+	FALSE	(A)n	SINE,Alu
chr22	18571457	A	G	0.00025	PEX26	+	TRUE	AluSz	SINE,Alu
chr19	39433141	A	G	0.00224	FBXO17	-	FALSE	AluJb	SINE,Alu
chr8	143763622	C	T	0.00470	PSCA	+	FALSE
chr3	58292300	C	T	0.00740	RPP14	+	FALSE
chr1	169293721	G	A	0.00978	NME7	-	FALSE
chr1	33087433	C	T	0.00687	ZBTB8OS	-	FALSE
chr1	53712569	C	A	0.00061	LRP8	-	FALSE	(CA)n	SINE,Alu
chr3	14986471	T	C	3.70393E-05	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	31342611	A	C	0.00145	SDC3	-	FALSE
chr4	17804852	T	C	0.00056	DCAF16	-	TRUE	AluSx	SINE,Alu
chr1	90401562	C	A	0.00057	LRRC8D	+	FALSE
chr3	40578831	A	G	0.00956	ZNF621	+	TRUE	AluJr	SINE,Alu
chr1	156565056	C	T	0.00498	GPATCH4	-	FALSE
chr1	11084104	G	A	0.00116	TARDBP	+	FALSE
chr1	45280426	A	G	0.00802		.	FALSE	AluSx	SINE,Alu
chr1	145688983	A	G	0.00072	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	11347150	C	A	0.00366	UBIAD1	+	FALSE
chr2	37328016	T	C	5.08368E-07		.	FALSE
chr2	86252025	T	C	3.86923E-05	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	117532798	C	G	0.00466	PTGFRN	+	FALSE
chr3	48786991	T	C	0.00584	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr2	85776621	T	C	0.00194	GGCX	-	TRUE	AluSz6	SINE,Alu
chr5	43575009	T	C	0.00498	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	22109952	G	A	0.00889		.	FALSE
chr1	981931	A	G	0.00951	AGRN	+	FALSE
chr3	182614493	T	C	0.00195	ATP11B	+	FALSE
chr17	79529443	T	C	0.00153	NPLOC4	-	TRUE	AluSx1	SINE,Alu
chr1	32833540	T	C	0.00381	BSDC1	-	TRUE
chr3	66430375	T	A	0.00091	LRIG1	-	FALSE
chr1	33149443	A	G	0.00013	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr3	124688639	C	A	0.00165	HEG1	-	FALSE
chr2	74442407	A	G	0.00122	MTHFD2	+	FALSE
chr1	205719141	C	T	0.00021	NUCKS1	-	FALSE
chr2	201253956	A	G	0.00071	SPATS2L	+	FALSE
chr1	44423703	C	T	1.17684E-14	IPO13	+	FALSE
chr1	10517300	T	C	0.00113		.	FALSE	AluJr	SINE,Alu
chr15	85185502	T	C	0.00058	WDR73,SCAND2P	+,-	FALSE	AluSc	SINE,Alu
chr17	65334867	T	C	1.03096E-06	PSMD12	-	TRUE	AluSq	SINE,Alu
chr8	48889823	C	A	0.00770	MCM4	+	FALSE	AluSx3	SINE,Alu
chr1	10517276	T	C	0.00039		.	FALSE	AluJr	SINE,Alu
chr1	71531596	A	G	0.00016	ZRANB2-AS1,ZRANB2	+,-	FALSE
chr20	25428587	A	G	0.00018	GINS1	+	TRUE	AluJb	SINE,Alu
chr8	97506373	C	G	0.00579	SDC2	+	FALSE	(CCCCGAG)n	SINE,Alu
chr1	26606589	C	G	0.00420	SH3BGRL3	+	FALSE
chr2	36776056	T	A	0.00030	CRIM1	+	FALSE
chr6	29857113	C	A	0.00582		.	FALSE
chr1	10517564	T	C	0.00371		.	FALSE	AluSx1	SINE,Alu
chr1	120164545	T	G	0.00058	ZNF697	-	FALSE
chr1	118502684	G	A	0.00682	WDR3,SPAG17	+,-	FALSE
chr2	37328034	T	C	5.88540E-05		.	FALSE
chr4	4291832	A	T	6.49020E-08	LYAR	-	FALSE
chr2	217366570	A	G	0.00332		.	FALSE	AluSz	SINE,Alu
chr1	10519982	T	C	3.22355E-05		.	FALSE	AluJr	SINE,Alu
chr1	150199123	G	T	0.00625	ANP32E	-	FALSE
chr6	99319240	T	A	0.00842		.	FALSE	Cheshire	SINE,Alu
chr4	164245873	T	A	0.00014	NPY1R	-	FALSE
chr1	2434523	T	C	0.00064	PLCH2	+	FALSE
chr2	99812988	A	G	0.00793	MRPL30	+	TRUE	AluJb	SINE,Alu
chr7	38764332	T	C	0.00209	VPS41	-	TRUE	AluSp	SINE,Alu
chr4	3076659	A	C	0.00401	HTT	+	FALSE	(CAG)n	SINE,Alu
chr1	32687475	T	C	0.00785	TMEM234,EIF3I	+,-	FALSE
chr1	16889985	T	C	0.00583	NBPF1	-	FALSE
chr20	25428646	A	G	9.98122E-05	GINS1	+	TRUE	AluJb	SINE,Alu
chr1	244871041	T	A	0.00590	DESI2	+	FALSE
chr17	8286136	T	A	0.00706	RPL26	-	FALSE
chr2	37328016	T	C	0.00473		.	FALSE
chr2	39664278	C	A	0.00053	MAP4K3	-	FALSE	(CGC)n	SINE,Alu
chr6	150046484	T	C	0.00953	NUP43	-	TRUE	AluSq2	SINE,Alu
chr5	159492107	A	T	0.00332	TTC1	+	FALSE
chr1	25169634	A	G	0.00843	CLIC4	+	FALSE
chr1	23636452	A	G	0.00294	HNRNPR	-	FALSE
chr2	85772408	G	A	0.00278	GGCX	-	FALSE
chr8	101932094	T	A	0.00288	YWHAZ	-	FALSE	MER34B-int	SINE,Alu
chr4	120378207	A	G	8.04303E-06	LOC645513	+	FALSE
chr1	153720690	G	A	0.00786	INTS3	+	FALSE
chr3	42591046	C	A	0.00933	SEC22C	-	FALSE
chr1	118167524	C	T	0.00902	FAM46C	+	FALSE
chr7	129963777	T	G	0.00874	CPA4	+	FALSE	(TG)n	SINE,Alu
chr1	157043632	C	T	0.00085		.	FALSE
chr4	2940371	T	C	0.00905	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr3	101284940	T	C	8.16697E-05	TRMT10C	+	FALSE
chr1	145283718	G	A	0.00897	NBPF20,NOTCH2NL	+	FALSE
chr11	8707908	A	G	0.00262	RPL27A	+	TRUE	AluSx1	SINE,Alu
chr1	113240711	G	A	0.00454	MOV10	+	FALSE
chr1	2520435	G	C	0.00041	FAM213B	+	FALSE
chr1	31905889	A	G	0.00565	SERINC2	+	FALSE
chr1	168213516	A	G	0.00233		.	FALSE	AluSx1	SINE,Alu
chr1	148556790	T	A	0.00728		.	FALSE
chr3	73116345	T	A	5.66390E-05	PPP4R2	+	FALSE
chr2	37328013	T	C	0.00765		.	FALSE
chr1	16945409	T	A	0.00290	CROCCP2	-	FALSE

RBP	LARP4
Knock-Method	shRNA
RBP Family	La
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR744PAQ
Platform	HiSeq
Pubmed ID	32252787

LARP4 - Target Gene Network