RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr6	74493432	A	C	0.00611	CD109	+	FALSE
chr15	90819418	A	G	0.00516		.	FALSE	AluSx	SINE,Alu
chr3	49396751	T	C	0.00000	RHOA	-	FALSE
chr7	55433884	A	C	0.00271	LANCL2	+	FALSE
chr19	46053370	T	C	0.00045	OPA3	-	TRUE	AluSx1	SINE,Alu
chr1	33148736	A	G	0.00525	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	38280010	C	T	0.00393	MTF1	-	FALSE
chr1	16933583	T	C	0.00050	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr4	57326126	A	G	0.00017	PAICS	+	TRUE	AluJr	SINE,Alu
chr3	196670087	G	A	4.07177E-06	NCBP2-AS2	+	FALSE
chr2	208619590	A	G	0.00274	CCNYL1,MIR4775	+	TRUE	EutTc1-N2	SINE,Alu
chr7	6064007	T	A	0.00551	EIF2AK1	-	FALSE
chr1	180144485	G	A	0.00665	QSOX1	+	FALSE
chr6	75797290	T	A	0.00147	COL12A1	-	FALSE
chr2	20424655	G	A	0.00193	SDC1	-	FALSE
chr1	246829873	G	A	0.00342	CNST	+	FALSE
chr6	42857136	A	G	2.38933E-09	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr19	53914417	A	G	0.00013	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	35648714	A	T	0.00841	SFPQ	-	FALSE
chr1	180247474	T	C	0.00022		.	FALSE
chr3	14985983	A	T	6.81677E-14	FGD5-AS1	-	FALSE
chr16	48386442	A	G	0.00824	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr3	52237970	C	T	0.00017	ALAS1	+	FALSE
chr2	37331753	T	C	0.00026		.	FALSE	AluJb	SINE,Alu
chr1	180991776	C	A	0.00664	STX6	-	FALSE
chr7	43679092	G	C	1.19724E-06	COA1	-	FALSE
chr9	111781030	C	T	0.00413	TMEM245	-	FALSE	AluJb	SINE,Alu
chr2	37331525	T	C	0.00479		.	FALSE	AluJb	SINE,Alu
chr3	50150389	A	G	0.00046	RBM5	+	TRUE	AluSx	SINE,Alu
chr1	204521724	A	G	0.00851	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	151778899	T	C	0.00475	RORC	-	FALSE
chr2	173462230	G	T	0.00100	PDK1	+	FALSE	MIRc	SINE,Alu
chr5	130537933	A	G	0.00084	LYRM7	+	TRUE	AluSp	SINE,Alu
chr19	63633	C	T	0.00999	WASH5P	-	FALSE	MLT1K	SINE,Alu
chr1	26144433	T	C	0.00476	SEPN1	+	FALSE
chr1	144829799	G	C	2.98942E-05	NBPF20,NBPF9	+	FALSE	L1MC4	SINE,Alu
chr1	10519932	T	C	0.00547		.	FALSE	AluJr	SINE,Alu
chr1	8045340	C	A	0.00059	PARK7	+	FALSE
chr2	37327670	T	C	0.00297		.	FALSE
chr2	27001973	C	T	0.00327	SLC35F6	+	FALSE	AluSx	SINE,Alu
chr17	79514129	G	A	0.00164	FAAP100	-	FALSE
chr1	230461079	G	A	9.74527E-05	PGBD5	-	FALSE
chr1	16889502	T	C	0.00516	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	10517512	T	C	0.00514		.	FALSE	AluSx1	SINE,Alu
chr1	10521170	T	C	0.00104	DFFA	-	TRUE	AluY	SINE,Alu
chr1	145293469	G	C	0.00888	NBPF20,NBPF10	+	FALSE
chr1	40537924	G	A	0.00476	CAP1	+	FALSE	(A)n	SINE,Alu
chr2	128063526	C	A	0.00759	MAP3K2	-	FALSE
chr3	15838717	A	C	0.00673	ANKRD28	-	FALSE	(A)n	SINE,Alu
chr2	128601490	T	C	0.00013		.	FALSE	AluJr	SINE,Alu
chr2	61764916	A	C	0.00189	XPO1	-	FALSE	(AC)n	SINE,Alu
chr1	16935130	C	T	0.00155	NBPF1	-	FALSE
chr1	36068370	T	C	4.62049E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	242251696	C	T	0.00335	PLD5	-	FALSE
chr1	1419768	A	G	0.00189	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	38463504	C	T	0.00068	FHL3	-	FALSE
chr1	32661615	A	T	0.00033	TXLNA	+	FALSE
chr1	109535088	G	A	0.00353	WDR47	-	FALSE
chr3	109049163	A	G	0.00440	DPPA4	-	FALSE	AluSp	SINE,Alu
chr1	111991845	C	A	0.00803	WDR77,ATP5F1	+,-	FALSE
chr1	204525744	A	G	0.00010	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	120163248	G	A	0.00711	ZNF697	-	FALSE
chr13	28240417	C	G	6.17934E-05	POLR1D	+	FALSE
chr1	161160459	T	C	0.00270	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr20	25427856	A	G	0.00094	GINS1	+	FALSE	AluSz	SINE,Alu
chr1	16893721	A	C	0.00043	NBPF1	-	FALSE
chr7	64435678	T	A	0.00256	ZNF117	-	FALSE
chr1	894375	G	A	0.00052	NOC2L	-	FALSE
chr1	144909956	G	A	0.00310	NBPF20,PDE4DIP	+,-	FALSE
chr3	44790759	T	C	1.45198E-07	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	6282400	T	C	0.00385	ICMT	-	TRUE	AluSz	SINE,Alu
chr4	185549875	A	T	0.00616	CASP3	-	FALSE
chr1	145369709	A	G	0.00073	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr6	31947917	C	T	0.00670		.	FALSE
chr1	100489835	A	G	0.00230	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	16958833	T	A	0.00765		.	FALSE
chr19	63721	T	G	0.00602	WASH5P	-	FALSE
chr1	9161245	T	C	0.00429		.	FALSE	AluSx	SINE,Alu
chr4	84525986	G	T	0.00081	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr1	6283260	T	C	0.00402	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	15456307	T	C	0.00939	METTL6	-	TRUE	AluJr	SINE,Alu
chr4	2940147	T	C	0.00036	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	86049364	A	G	0.00207	CYR61	+	FALSE
chr1	35644502	A	T	0.00702	SFPQ	-	FALSE	(A)n	SINE,Alu
chr3	37031951	G	A	0.00914	EPM2AIP1	-	FALSE	(A)n	SINE,Alu
chr3	121435624	C	T	0.00063	GOLGB1	-	FALSE
chr1	67874697	T	C	0.00119	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr12	98943202	A	G	6.48893E-05	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	173864944	G	T	0.00415		.	FALSE
chr19	42375554	A	G	0.00458		.	FALSE	AluSx	SINE,Alu
chr1	40219280	T	C	0.00025	PPIE	+	FALSE
chr1	145369556	A	G	0.00086	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr2	135208354	A	T	0.00249	MGAT5	+	FALSE
chr5	37290492	T	C	8.25709E-07		.	FALSE	AluSz	SINE,Alu
chr8	23290112	T	C	0.00121	ENTPD4	-	TRUE	AluY	SINE,Alu
chr22	33257176	A	G	0.00930	SYN3,TIMP3	+,-	FALSE
chr2	114718893	C	G	0.00631	ACTR3	+	FALSE
chr1	109884775	T	G	0.00026	SORT1	-	FALSE
chr1	40147856	T	C	0.00205	HPCAL4	-	TRUE
chr1	46076467	A	G	0.00118	NASP	+	TRUE	AluSx	SINE,Alu
chr9	28607	T	C	0.00146	WASH1	-	FALSE
chr2	38971643	T	A	0.00013	SRSF7	-	FALSE
chr1	25894463	G	A	0.00596	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr2	206987634	T	C	0.00281		.	FALSE	AluJb	SINE,Alu
chr1	184661932	A	G	0.00063	EDEM3	-	FALSE
chr12	57923211	A	C	0.00071	MBD6	+	FALSE	(C)n	SINE,Alu
chr1	10520045	T	C	0.00085		.	FALSE	AluSx	SINE,Alu
chr1	21810587	A	G	0.00563	NBPF3	+	FALSE
chr10	79800437	T	A	0.00445	RPS24	+	FALSE
chr22	38881699	A	T	0.00802	DDX17	-	FALSE	(TA)n	SINE,Alu
chr5	64964314	T	C	0.00208	SGTB	-	TRUE	AluSc	SINE,Alu
chr1	1595048	T	C	0.00495	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	32697063	T	C	0.00035	EIF3I	+	FALSE	AluSp	SINE,Alu
chr4	190873405	C	T	0.00325	FRG1	+	FALSE
chr16	10625049	T	C	1.15092E-05	EMP2	-	TRUE	AluSx3	SINE,Alu
chr5	118174668	T	C	1.32199E-05	DTWD2	-	TRUE	AluY	SINE,Alu
chr1	1419743	A	G	0.00848	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	27879797	C	A	0.00246	AHDC1	-	FALSE	MIRb	SINE,Alu
chr2	158169499	A	G	0.00119	GALNT5	+	FALSE
chr2	47387306	G	T	0.00026	CALM2	-	FALSE
chr1	59127086	G	A	0.00051	MYSM1	-	FALSE
chr1	10517276	T	C	0.00779		.	FALSE	AluJr	SINE,Alu
chr1	46076543	A	G	0.00156	NASP	+	TRUE	AluSx	SINE,Alu
chr5	139931630	A	T	0.00052	SRA1	-	FALSE
chr5	43575009	T	C	0.00498	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	53290298	A	G	0.00063	ZYG11B	+	TRUE	AluSg4	SINE,Alu
chr1	40539202	G	A	0.00966	PPT1	-	FALSE
chr1	144595935	G	A	0.00359	NBPF20	+	FALSE	AluJb	SINE,Alu
chr7	6501830	G	A	0.00217	KDELR2	-	FALSE
chr4	6644391	G	A	0.00000	MRFAP1	+	FALSE
chr12	33021934	A	G	0.00035	PKP2	-	FALSE
chr1	40537944	C	A	0.00371	CAP1	+	FALSE
chr2	24225554	A	G	0.00419		.	FALSE	AluSq2	SINE,Alu
chr1	93297595	G	T	0.00479	RPL5	+	FALSE
chr4	17803537	T	C	0.00366	DCAF16	-	TRUE	AluY	SINE,Alu
chr1	12628188	T	C	3.43513E-08	DHRS3	-	FALSE
chr1	33145958	G	T	0.00080	SYNC,RBBP4	+,-	FALSE	(T)n	SINE,Alu
chr16	75479484	T	C	1.12347E-07	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr1	145376020	G	A	0.00478	NBPF20,NBPF10	+	FALSE
chr5	157185192	A	G	0.00835	LSM11	+	TRUE	AluSq	SINE,Alu
chr12	69237056	A	G	0.00372	MDM2	+	TRUE
chr3	17199207	T	A	0.00075	TBC1D5	-	FALSE	A-rich	SINE,Alu
chr1	28662253	A	G	0.00187	MED18	+	TRUE	AluSq2	SINE,Alu
chr10	61548856	T	C	0.00067	CCDC6	-	FALSE
chr15	42861741	A	G	0.00200	HAUS2	+	TRUE	AluJb	SINE,Alu
chr4	17802956	T	C	0.00351	DCAF16	-	TRUE	AluSz	SINE,Alu
chr2	28636644	A	G	0.00918	FOSL2	+	FALSE
chr5	37291386	T	C	1.33550E-08		.	FALSE	AluSx3	SINE,Alu
chr8	145150065	G	C	0.00585	CYC1	+	FALSE
chr2	47130850	A	G	0.00875	MCFD2	-	FALSE
chr9	19376248	A	T	0.00821		.	FALSE
chr2	207027628	A	G	0.00022	EEF1B2	+	FALSE
chr1	26755229	A	G	0.00318	LIN28A	+	FALSE	AluSx1	SINE,Alu
chr1	145329094	G	C	0.00273	NBPF20,NBPF10	+	FALSE
chr1	168218735	A	G	0.00924		.	FALSE	AluSz	SINE,Alu
chr1	145512944	A	G	0.00110	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	28825433	A	G	0.00019	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr2	86252025	T	C	3.86923E-05	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr3	72426059	T	A	0.00417	RYBP	-	FALSE
chr3	10193743	T	C	0.00456	VHL	+	FALSE	AluJr	SINE,Alu
chr1	39500293	T	A	0.00552	NDUFS5	+	FALSE
chr3	122291688	A	G	0.00597	DTX3L	+	FALSE	AluSz	SINE,Alu
chr9	102744698	G	T	0.00301	ERP44	-	FALSE
chr1	110276861	T	C	0.00180	GSTM3	-	FALSE	LTR77	SINE,Alu
chr1	145441843	G	A	0.00744	NBPF20,NBPF10,TXNIP	+	FALSE
chr1	29631909	A	G	0.00029	PTPRU	+	FALSE
chr1	155695998	A	G	0.00574	DAP3	+	TRUE	AluSp	SINE,Alu
chr2	37328075	T	C	2.30710E-05		.	FALSE
chr2	8998555	G	A	0.00584	MBOAT2	-	FALSE
chr2	37331019	T	C	0.00033		.	FALSE	AluSx1	SINE,Alu
chr3	45721836	A	G	0.00310	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr2	198416727	T	A	0.00378	HSPE1-MOB4,MOB4	+	FALSE
chr4	248713	A	G	0.00367	ZNF876P	+	FALSE
chr1	31905889	A	G	0.00565	SERINC2	+	FALSE
chr16	58195430	G	C	0.00325	CSNK2A2	-	FALSE	(AC)n	SINE,Alu
chr3	196659884	G	T	0.00217	SENP5	+	FALSE
chr1	6684049	G	A	5.41898E-05	PHF13	+	FALSE
chr2	206986945	T	C	0.00414		.	FALSE	AluJr	SINE,Alu
chr5	151041874	A	C	0.00060	SPARC	-	FALSE
chr1	11785234	A	G	0.00339		.	FALSE	AluJr	SINE,Alu
chr1	151092839	A	G	0.00135	GABPB2	+	TRUE	AluSp	SINE,Alu
chr1	21940555	C	T	0.00067	RAP1GAP	-	FALSE
chr1	19953120	G	A	0.00027	MINOS1,MINOS1-NBL1	+	FALSE
chr1	93826819	A	T	0.00086	DR1	+	FALSE	(GTTTT)n	SINE,Alu
chr3	5026729	C	T	0.00539	BHLHE40	+	FALSE
chr3	179042866	A	G	0.00806	ZNF639	+	FALSE	AluSp	SINE,Alu
chr1	148753279	G	T	0.00358		.	FALSE
chr19	58420152	C	A	0.00322	ZNF417	-	FALSE
chr1	19810692	A	C	0.00069	CAPZB	-	FALSE
chr2	37327665	T	C	2.45403E-06		.	FALSE
chr5	49692633	T	G	0.00808	EMB	-	FALSE
chr2	24225006	A	G	0.00555		.	FALSE	AluSx	SINE,Alu
chr5	72801321	T	A	0.00280	BTF3	+	FALSE
chr3	33481400	G	C	1.12603E-05	UBP1	-	FALSE
chr3	179116220	T	C	0.00233	GNB4	-	TRUE	AluSz6	SINE,Alu
chr3	10290511	G	T	0.00289	TATDN2	+	FALSE
chr1	226333556	C	A	0.00250	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr1	220231963	T	C	0.00343	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr2	37328034	T	C	8.99638E-05		.	FALSE
chr1	24086786	A	C	0.00812	TCEB3	+	FALSE
chr2	217366897	A	G	0.00440		.	FALSE	AluSz6	SINE,Alu
chr1	16893763	T	C	0.00996	NBPF1	-	FALSE
chr4	57326873	A	G	0.00342	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	47184569	G	C	0.00027	EFCAB14	-	FALSE
chr1	53288974	A	T	0.00265	ZYG11B	+	FALSE	AluJo	SINE,Alu
chr5	37291508	T	C	0.00430		.	FALSE	AluSx3	SINE,Alu
chr1	21100856	A	C	0.00010	HP1BP3	-	FALSE	(AC)n	SINE,Alu
chr1	6651457	G	A	0.00614	KLHL21	-	FALSE
chr9	115446725	T	C	0.00037	INIP	-	TRUE	AluJr	SINE,Alu
chr2	54888359	A	G	3.08576E-05	SPTBN1	+	FALSE
chr1	9161137	T	C	0.00087		.	FALSE	AluSx	SINE,Alu
chr15	40954864	A	G	0.00636	KNL1	+	TRUE
chr1	10518831	T	C	0.00213		.	FALSE	AluSx1	SINE,Alu
chr6	27425185	C	A	0.00577	ZNF184	-	FALSE
chr3	196079293	T	C	0.00308		.	FALSE	AluSx	SINE,Alu
chr1	10518845	T	C	0.00882		.	FALSE	AluSx1	SINE,Alu
chr1	10043358	A	G	0.00982	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr1	36067817	T	C	7.91657E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	31553968	T	C	0.00555	C5orf22	+	FALSE
chr1	144822294	G	C	0.00371	NBPF20,NBPF9	+	FALSE
chr19	13054905	T	C	0.00324	CALR	+	FALSE	(T)n	SINE,Alu
chr1	11783041	A	G	0.00036		.	FALSE	AluSx	SINE,Alu
chr3	14239845	G	A	0.00375	LSM3	+	FALSE
chr10	28971536	A	T	0.00815	BAMBI	+	FALSE
chr6	26095468	A	G	0.00980	HFE	+	TRUE	AluY	SINE,Alu
chr1	202992954	T	C	0.00042	TMEM183A	+	FALSE
chr3	195415529	C	T	0.00819	LINC00969,SDHAP2	+	FALSE	L1ME2	SINE,Alu
chr3	107773064	T	C	0.00421	CD47	-	TRUE	FLAM_A	SINE,Alu
chr10	51026705	C	G	0.00456	PARG	-	FALSE
chr8	30535980	T	C	0.00038	GSR	-	TRUE	AluJr	SINE,Alu
chr1	155058663	G	A	0.00300	EFNA3	+	FALSE
chr1	10519912	T	C	0.00750		.	FALSE	AluJr	SINE,Alu
chr21	40567667	A	G	0.00658	BRWD1	-	FALSE
chr7	65888510	T	C	0.00519		.	FALSE
chr1	27426756	A	G	0.00384	SLC9A1	-	FALSE
chr7	30616247	T	C	0.00887	LOC401320	-	FALSE	THE1B	SINE,Alu
chr3	196771049	T	C	0.00010	DLG1	-	FALSE
chr11	32625925	A	G	0.00845	CCDC73	-	FALSE	AluJb	SINE,Alu
chrX	133930368	T	G	0.00126	FAM122B	-	FALSE	G-rich	SINE,Alu
chr6	150046601	T	C	0.00073	NUP43	-	TRUE	AluSq2	SINE,Alu
chr3	178978532	T	C	0.00061	KCNMB3	-	FALSE
chr2	113289701	T	G	0.00994	TTL	+	FALSE
chr1	225684742	T	C	0.00518	ENAH	-	FALSE
chr3	15113893	T	C	0.00042	RBSN	-	TRUE	AluSz6	SINE,Alu
chr2	191556844	T	C	0.00024	NAB1	+	FALSE
chr9	132268359	A	G	0.00436	LINC00963	+	TRUE	AluJb	SINE,Alu
chr1	173834149	A	C	0.00265	GAS5	-	FALSE	AluSz	SINE,Alu
chr19	63697	G	A	0.00742	WASH5P	-	FALSE
chr1	4834606	T	C	0.00647	AJAP1	+	FALSE
chr16	10625058	T	C	2.66942E-12	EMP2	-	TRUE	AluSx3	SINE,Alu
chr12	98943192	A	G	0.00011	TMPO	+	FALSE	AluSz	SINE,Alu
chr11	76733943	A	G	0.00925	ACER3	+	FALSE	A-rich	SINE,Alu

RBP	TBRG4
Knock-Method	shRNA
RBP Family	RAP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR079IPT
Platform	HiSeq
Pubmed ID	32252787

TBRG4 - Target Gene Network