RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr3	48787757	T	C	0.00605	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	109475629	A	G	0.00835	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr1	20982631	G	A	0.00133	DDOST	-	FALSE
chr4	139086857	G	A	0.00809	SLC7A11-AS1,SLC7A11	+,-	FALSE
chr3	44790781	T	C	0.00074	KIAA1143	-	TRUE	AluY	SINE,Alu
chr16	75479377	T	C	0.00639	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr2	27995238	G	A	0.00345	MRPL33	+	FALSE
chr1	42644770	C	T	1.21495E-06	FOXJ3	-	FALSE
chr1	33150642	A	G	0.00316	SYNC,RBBP4	+,-	FALSE	AluJo	SINE,Alu
chr20	18468512	T	C	0.00072	RBBP9	-	TRUE	AluSz6	SINE,Alu
chr2	206984202	T	C	0.00849		.	FALSE	AluSx	SINE,Alu
chr1	1650845	G	A	0.00094	CDK11B,CDK11A	-	FALSE
chr4	7762675	C	T	3.92312E-07	AFAP1,AFAP1-AS1	+,-	FALSE
chr5	64964314	T	C	0.00208	SGTB	-	TRUE	AluSc	SINE,Alu
chr2	202038524	A	G	0.00382		.	FALSE	AluSx1	SINE,Alu
chr1	40537924	G	A	0.00245	CAP1	+	FALSE	(A)n	SINE,Alu
chr5	65120054	C	T	0.00625	NLN	+	FALSE
chr10	102315864	T	A	0.00290		.	FALSE
chr2	128952015	A	G	0.00086	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	6283332	T	C	6.58989E-06	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	238253065	C	T	0.00914	COL6A3	-	FALSE
chr1	144873887	C	T	0.00088	NBPF20,PDE4DIP	+,-	FALSE
chr5	37289051	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr1	26143725	A	T	0.00988	SEPN1	+	FALSE	AluSx	SINE,Alu
chr4	153898736	A	G	0.00574	FHDC1	+	FALSE	AluJb	SINE,Alu
chr6	8014786	T	C	0.00086	BLOC1S5-TXNDC5,BLOC1S5,EEF1E1-BLOC1S5	-	TRUE	AluSz	SINE,Alu
chr1	155106227	A	T	0.00214	EFNA1	+	FALSE
chr2	20424655	G	A	0.00193	SDC1	-	FALSE
chr1	16932429	C	G	0.00823	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	16889127	A	G	0.00213	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	145512950	A	G	2.03454E-08	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr5	125962169	A	G	0.00013	PHAX	+	TRUE	AluSc	SINE,Alu
chr1	9331254	A	G	0.00793	H6PD	+	TRUE	AluSx	SINE,Alu
chr2	198368113	T	A	1.78788E-05	HSPE1,HSPE1-MOB4	+	FALSE
chr3	179506482	A	G	0.00017	USP13	+	FALSE	MER33	SINE,Alu
chr15	90819619	A	G	5.14004E-06		.	FALSE	AluSx	SINE,Alu
chr1	33149486	A	G	0.00874	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	163288931	G	A	0.00284	RGS5	-	FALSE	MamRep1527	SINE,Alu
chr1	9161203	T	C	3.69156E-05		.	FALSE	AluSx	SINE,Alu
chr3	195435168	T	G	0.00111	LINC00969	+	FALSE
chr3	12641718	G	A	0.00091	RAF1	-	FALSE
chr4	7762848	G	A	4.98180E-08	AFAP1,AFAP1-AS1	+,-	FALSE
chr8	22111410	A	G	0.00396		.	FALSE	AluSz	SINE,Alu
chr1	46752091	G	A	0.00035	LRRC41	-	FALSE
chr1	10520145	T	C	0.00424		.	FALSE	AluSx	SINE,Alu
chr6	34252328	T	A	0.00062		.	FALSE	(T)n	SINE,Alu
chr1	117531179	G	A	0.00116	PTGFRN	+	FALSE
chr19	42375549	A	G	4.56329E-05		.	FALSE	AluSx	SINE,Alu
chr19	56090351	C	T	1.52943E-09	ZNF579	-	FALSE
chr1	118166096	C	T	0.00861	FAM46C	+	FALSE
chr1	145688961	A	G	0.00324	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr3	99517483	C	T	0.00070	MIR548G	-	FALSE	(TG)n	SINE,Alu
chr1	179312752	C	T	0.00106	SOAT1	+	FALSE
chr1	10520649	T	C	0.00629	DFFA	-	TRUE	AluSc8	SINE,Alu
chr16	713251	A	G	0.00628	WDR90	+	TRUE	AluSx	SINE,Alu
chr5	118175182	T	C	0.00205	DTWD2	-	TRUE	AluJr	SINE,Alu
chr1	144932200	G	T	0.00492	NBPF20,PDE4DIP	+,-	FALSE
chr6	31324078	G	T	0.00480		.	FALSE
chr1	16891340	T	A	0.00404	NBPF1	-	FALSE
chr5	140564263	C	T	0.00475	PCDHB16	+	FALSE
chr1	8021778	T	C	0.00495	PARK7	+	FALSE
chr1	3697486	C	G	0.00110	LRRC47	-	FALSE	AluSc	SINE,Alu
chr3	62189465	C	T	2.69664E-05	PTPRG	+	FALSE
chr1	36755235	A	G	0.00562	THRAP3	+	FALSE
chr4	5743512	T	C	0.00210	EVC	+	FALSE
chr8	144940794	G	C	0.00038	EPPK1	-	FALSE
chr3	52027636	C	T	0.00965		.	FALSE
chr8	12286573	G	A	0.00052	FAM86B2	-	FALSE
chr1	26799971	T	A	0.00713	HMGN2	+	FALSE
chr4	187647832	C	G	0.00592		.	FALSE
chr1	16894497	C	T	0.00454	NBPF1	-	FALSE
chr2	191067763	A	T	0.00038	C2orf88	+	FALSE
chr2	37328087	T	C	0.00335		.	FALSE
chr1	949472	G	A	2.93477E-10	ISG15	+	FALSE
chr1	19543785	T	C	0.00492	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr5	81571669	C	T	0.00143	RPS23	-	FALSE
chr3	196660344	T	A	0.00366	SENP5	+	FALSE
chr5	125961918	G	A	0.00421	PHAX	+	FALSE	FLAM_C	SINE,Alu
chr1	36068184	T	C	0.00177	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	10519912	T	C	0.00185		.	FALSE	AluJr	SINE,Alu
chr1	10520487	T	C	0.00638		.	FALSE	AluSx1	SINE,Alu
chr1	33148706	A	G	0.00050	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr15	43698008	C	T	0.00175	TUBGCP4	+	FALSE	AluSp	SINE,Alu
chr6	31321883	G	A	0.00000		.	FALSE
chr7	17384440	A	G	0.00373	AHR	+	TRUE	AluSx	SINE,Alu
chr1	64095111	A	G	0.00201	PGM1	+	FALSE
chr4	177252327	A	G	3.52508E-05	SPCS3	+	TRUE
chr2	129024188	T	G	0.00051	HS6ST1	-	FALSE
chr1	6651728	C	T	0.00118	KLHL21	-	FALSE
chr1	147124310	T	G	0.00968	ACP6	-	FALSE
chr1	226171340	T	C	0.00462	SDE2	-	TRUE	BC200	SINE,Alu
chr19	9673276	C	A	0.00085		.	FALSE	Tigger1	SINE,Alu
chr12	133334739	T	C	0.00388	ANKLE2	-	TRUE	AluSz	SINE,Alu
chr1	183094547	T	C	0.00277	LAMC1	+	FALSE
chr1	179829505	T	C	0.00592	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr2	20097874	T	C	0.00769	TTC32	-	FALSE
chr1	95658358	T	C	0.00633	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr7	157129834	C	G	1.26796E-05	DNAJB6	+	FALSE
chr2	9629953	C	A	0.00042	ADAM17	-	FALSE
chr2	197184321	C	T	0.00923	HECW2	-	FALSE
chr1	179042551	A	G	0.00336	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr1	32697063	T	C	0.00035	EIF3I	+	FALSE	AluSp	SINE,Alu
chr5	56177845	A	T	0.00420	MAP3K1	+	FALSE
chr1	6583066	T	C	0.00088	NOL9	-	TRUE	AluSx4	SINE,Alu
chr19	11256672	T	C	9.28647E-11	SPC24	-	TRUE	AluJr4	SINE,Alu
chr5	95130804	C	T	0.00792	RHOBTB3	+	FALSE	AluSz	SINE,Alu
chr1	36024788	C	T	5.60663E-14	NCDN	+	FALSE
chr3	24163645	C	G	1.00972E-05	THRB	-	FALSE
chr1	109475629	A	G	0.00315	GPSM2,CLCC1	+,-	FALSE	AluJo	SINE,Alu
chr3	119543179	C	A	0.00992	GSK3B	-	FALSE	(CA)n	SINE,Alu
chr1	168212509	A	G	0.00765		.	FALSE
chr10	75009651	T	C	0.00558	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	10042955	A	G	0.00430	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr4	84525973	C	G	0.00148	GPAT3	+	FALSE
chr8	146280802	C	T	1.51873E-05	C8orf33	+	FALSE	LTR13	SINE,Alu
chr1	1169728	G	T	0.00745	B3GALT6	+	FALSE
chr6	27425185	C	A	0.00577	ZNF184	-	FALSE
chr7	128143797	A	G	4.50405E-06		.	FALSE	AluSq2	SINE,Alu
chrX	77083845	T	C	0.00102	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	3545200	G	A	0.00381	TPRG1L	+	FALSE
chr12	51325237	A	G	5.73531E-05	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr17	49042289	G	T	0.00737	SPAG9	-	FALSE	AluJb	SINE,Alu
chr8	146200283	T	C	0.00082	ZNF252P	-	TRUE	AluSc	SINE,Alu
chr1	46159809	T	A	0.00605	TMEM69	+	FALSE
chr1	145513016	A	G	0.00400	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	23885230	C	G	0.00075	ID3	-	FALSE
chr1	33148635	A	G	0.00168	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	85785107	T	C	4.02203E-05	DDAH1	-	FALSE
chr1	20809386	T	G	0.00561	CAMK2N1	-	FALSE
chr1	202821382	T	C	0.00983		.	FALSE	AluJr	SINE,Alu
chr5	64016339	C	T	6.96791E-06	SREK1IP1	-	FALSE
chr8	6263057	A	C	0.00419	LOC100287015	-	FALSE
chr1	205320515	A	G	0.00022	KLHDC8A	-	FALSE
chr6	42856045	A	G	0.00428	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr22	42908563	C	T	0.00492	SERHL,RRP7A	+,-	FALSE
chr9	70648427	G	A	0.00096		.	FALSE	TAR1	SINE,Alu
chr13	20246634	T	G	0.00071	MPHOSPH8	+	FALSE
chr1	144604425	C	T	0.00269	NBPF20	+	FALSE
chr3	192515510	G	T	0.00559	MB21D2	-	FALSE
chr19	11256689	T	C	9.47404E-06	SPC24	-	TRUE	AluJr4	SINE,Alu
chr1	21070406	C	A	0.00671	HP1BP3	-	FALSE	AluSx	SINE,Alu
chr2	65496075	C	T	0.00972	ACTR2	+	FALSE
chr4	39116911	T	C	0.00303	KLHL5	+	FALSE
chr2	206983138	T	C	0.00669		.	FALSE	AluJb	SINE,Alu
chr1	168218522	A	G	9.71811E-05		.	FALSE	AluSz	SINE,Alu
chr3	169808354	G	A	0.00015	PHC3	-	FALSE
chr1	87379493	G	A	0.00353	SEP15	-	FALSE
chr3	98515569	C	T	3.10862E-15	DCBLD2	-	FALSE
chr1	10517653	T	C	0.00792		.	FALSE	AluSx1	SINE,Alu
chr3	5026731	C	T	0.00824	BHLHE40	+	FALSE
chr1	6282400	T	C	0.00601	ICMT	-	TRUE	AluSz	SINE,Alu
chr17	909317	G	A	0.00766	ABR	-	FALSE
chr14	50053315	G	A	0.00150		.	FALSE	7SLRNA	SINE,Alu
chr22	41252612	G	A	0.00561	ST13	-	FALSE
chr1	10517527	T	C	0.00453		.	FALSE	AluSx1	SINE,Alu
chr1	79356178	C	A	0.00678	ADGRL4	-	FALSE
chr2	85773376	T	C	0.00607	GGCX	-	TRUE	AluY	SINE,Alu
chr1	155214017	C	A	0.00946	GBA	-	FALSE	AluSx3	SINE,Alu
chr1	9328120	A	G	0.00128	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	28661653	A	G	9.75782E-05	MED18	+	TRUE	AluSg	SINE,Alu
chr1	46828460	C	T	0.00101	NSUN4	+	FALSE
chr2	201842391	T	C	0.00081	FAM126B	-	TRUE	AluJb	SINE,Alu
chr10	51613297	A	G	0.00347	TIMM23B,TIMM23	+,-	FALSE
chr3	5026730	T	C	0.00488	BHLHE40	+	FALSE
chr1	16061035	G	C	0.00089	PLEKHM2	+	FALSE
chr2	112252630	A	C	0.00040	MIR4435-2HG	-	FALSE
chr3	156258255	T	C	0.00059	SSR3	-	TRUE	AluYk3	SINE,Alu
chr2	37331065	T	C	0.00017		.	FALSE	AluSx1	SINE,Alu
chr1	145513017	A	G	0.00037	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	6282315	T	C	0.00508	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	20978024	C	A	0.00175	PINK1-AS	-	FALSE
chr1	205737665	G	T	0.00025	RAB29	-	FALSE	AluSq2	SINE,Alu
chr1	10043363	A	G	0.00509	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr5	52250837	C	T	0.00017		.	FALSE
chr1	46075715	A	G	0.00058	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	36316571	A	C	0.00893	AGO4	+	FALSE
chr3	160968914	T	C	0.00305	NMD3	+	FALSE
chr1	38280618	G	T	0.00020	MTF1	-	FALSE	(T)n	SINE,Alu
chr1	120163518	C	T	0.00067	ZNF697	-	FALSE
chr1	220231276	T	C	0.00545	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr11	133689	G	A	0.00856		.	FALSE	AluJb	SINE,Alu
chr1	326499	A	G	0.00583		.	FALSE
chr5	96498783	G	A	0.00056	RIOK2	-	FALSE
chr1	19543459	T	C	0.00395	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr6	33679439	A	C	0.00192	UQCC2	-	FALSE
chr17	5288084	T	A	0.00232	RABEP1	+	FALSE
chr1	16933637	A	G	0.00062	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr2	204162601	A	G	0.00032	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr1	28921019	A	G	0.00030	RAB42	+	TRUE	AluSx	SINE,Alu
chr4	16040617	C	T	0.00032	PROM1	-	FALSE
chr2	201842323	T	C	0.00254	FAM126B	-	TRUE	AluJb	SINE,Alu
chr1	120164252	G	A	0.00139	ZNF697	-	FALSE
chr5	40830064	T	C	0.00554		.	FALSE	AluSp	SINE,Alu
chr1	28661576	A	G	0.00625	MED18	+	TRUE	AluSg	SINE,Alu
chr1	28826118	A	G	0.00175	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr4	17802955	T	C	0.00071	DCAF16	-	FALSE	AluSz	SINE,Alu
chr1	145509570	A	G	0.00043	NBPF20,NBPF10,RBM8A	+	TRUE	AluJr	SINE,Alu
chr1	113243096	G	T	0.00114	MOV10	+	FALSE
chr5	157185192	A	G	0.00835	LSM11	+	TRUE	AluSq	SINE,Alu
chr1	67874731	T	C	0.00817	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	3730400	T	C	0.00894	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	40539213	A	G	0.00693	PPT1	-	FALSE
chr1	109242607	G	A	0.00652	PRPF38B	+	FALSE
chr14	105270480	T	G	0.00035	ZBTB42	+	FALSE
chr7	6063283	C	T	0.00032	AIMP2,EIF2AK1	+,-	FALSE
chr9	33039686	G	A	0.00542	DNAJA1	+	FALSE
chr12	98943103	A	G	0.00306	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	45110404	C	T	0.00230	RNF220	+	FALSE
chr17	67539228	G	C	0.00200		.	FALSE
chr1	220232066	T	C	0.00673	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr3	123332546	C	G	0.00964	MYLK-AS1,MYLK	+,-	FALSE
chr1	154987526	C	T	0.00043	ZBTB7B	+	FALSE
chr1	175128444	C	A	0.00036	KIAA0040	-	FALSE
chr15	41590978	A	G	1.05775E-06	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	19542464	T	C	0.00736	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr14	19686329	G	A	0.00117	DUXAP10	+	FALSE
chr3	45125417	G	A	0.00024	CDCP1	-	FALSE	AluJb	SINE,Alu
chr8	144940798	T	C	0.00255	EPPK1	-	FALSE
chr1	110912873	T	C	0.00116	SLC16A4	-	FALSE
chr2	37430603	T	C	0.00483	CEBPZOS,CEBPZ	+,-	FALSE
chr15	42550349	A	C	0.00120	TMEM87A	-	FALSE
chr1	144521099	A	G	0.00049	NBPF20	+	FALSE
chr3	148863151	A	G	0.00062	HPS3	+	FALSE
chr1	33149443	A	G	0.00013	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	46164493	T	C	0.00977	IPP	-	TRUE	AluJb	SINE,Alu
chr2	37330487	T	C	0.00840		.	FALSE	AluSq2	SINE,Alu
chr1	168218543	A	G	7.78857E-07		.	FALSE	AluSz	SINE,Alu
chr1	67874697	T	C	0.00642	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr1	27662235	G	T	0.00766	TMEM222	+	FALSE
chr1	202993198	C	A	0.00754	TMEM183A	+	FALSE
chr1	54691910	A	G	0.00481	SSBP3	-	FALSE
chr1	150704486	T	C	0.00947	CTSS	-	TRUE	AluJo	SINE,Alu
chr4	2940164	T	C	2.22609E-06	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	234744480	G	A	0.00237	IRF2BP2	-	FALSE
chr1	16889575	T	C	0.00467	NBPF1	-	TRUE
chr6	75797290	T	A	0.00147	COL12A1	-	FALSE
chr15	33064742	C	G	0.00215	FMN1	-	FALSE
chr3	53259329	G	C	0.00036	TKT	-	FALSE
chr16	70284570	A	C	0.00028	EXOSC6	-	FALSE	AluSx	SINE,Alu
chr1	19586532	A	G	7.13982E-05	MRTO4	+	TRUE	AluSz	SINE,Alu
chr8	30643553	A	G	0.00968	PPP2CB	-	FALSE
chr22	39069181	T	C	0.00346	CBY1	+	FALSE
chr2	128951094	A	G	0.00415	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	10519048	T	C	0.00728		.	FALSE	AluSx3	SINE,Alu
chr1	200521412	G	A	0.00588	KIF14	-	FALSE
chr1	36530674	A	G	0.00603		.	FALSE	AluSg	SINE,Alu
chr1	36534736	A	G	0.00016		.	FALSE	AluJo	SINE,Alu
chr1	36067817	T	C	0.00016	PSMB2	-	TRUE	AluSz	SINE,Alu
chr8	145159705	G	A	0.00383	MAF1	+	FALSE

RBP	RPS10
Knock-Method	shRNA
RBP Family	S10_plectin
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR410UHJ
Platform	HiSeq
Pubmed ID	32252787

RPS10 - Target Gene Network