Dataset Overview
RBP
TRA2A
Knock-Method
shRNA
RBP Family
RRM_1
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR030GZQ
Platform
HiSeq
Pubmed ID
32252787
TRA2A - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of TRA2A
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A2M
2342.22
1406.59
-0.82245
3.83486E-22
4.07416E-20
A2M-AS1
0.34
0.93
1.24878
0.00041
0.00213
AAAS
28.52
24.95
-0.28656
0.00283
0.01084
AACS
15.41
13.36
-0.29286
0.00120
0.00526
AAED1
6.05
4.62
-0.43237
0.00150
0.00639
AAMP
122.18
105.91
-0.35307
0.00016
0.00097
AARS
40.96
62.02
0.49845
2.63636E-11
7.43331E-10
AARSD1
13.23
10.4
-0.37817
0.02239
0.06018
AATK
2.01
2.62
0.40975
0.01970
0.05415
ABAT
27.87
39.33
0.40260
5.65428E-07
6.52379E-06
Showing 1 to 10 of 5,766 entries
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Function Analysis of Target Genes of TRA2A
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101576820_101576968_101572774_101572901_101577064_101577241
0.00149
-0.208
DataSet_01_71
View details
ABHD12
25281967_25282014_25280833_25281520_25282854_25282982
0.00009
0.059
DataSet_01_71
View details
ABI1
27044583_27044670_27040526_27040712_27047990_27048167
0.00000
-0.245
DataSet_01_71
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ABI1
27047990_27048164_27040526_27040712_27054146_27054247
0.00840
0.081
DataSet_01_71
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AC007246.3
39815588_39815707_39745815_39745851_39826505_39826679
0.00752
-0.172
DataSet_01_71
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AC027612.6
91842945_91843023_91805185_91806180_91843393_91843404
0.00115
-0.077
DataSet_01_71
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AC093838.4
132277386_132277515_132277107_132277239_132277669_132277994
0.00218
0.299
DataSet_01_71
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ACAA1
38167818_38167832_38167316_38167372_38168000_38168191
0.00000
0.547
DataSet_01_71
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ACADM
76252384_76252550_76251717_76251959_76253181_76253260
0.00210
0.068
DataSet_01_71
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ACADM
76252384_76252601_76251717_76251959_76253181_76253260
0.00355
0.058
DataSet_01_71
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Showing 1 to 10 of 426 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACAA1
38169276_38169357_38170780_38170879_38168000_38168191
0.00000
-0.109
DataSet_01_71
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AFG3L2
12353003_12353157_12356692_12356830_12351304_12351412
0.00356
-0.35
DataSet_01_71
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AFP
74306318_74306530_74309067_74309161_74303890_74304023
0.00141
-0.499
DataSet_01_71
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ALB
74272345_74272478_74275071_74275140_74270017_74270123
0.00000
-0.484
DataSet_01_71
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ALB
74275071_74275140_74275140_74275204_74274354_74274522
0.00000
-0.094
DataSet_01_71
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AP1G2
24033254_24033368_24033541_24033597_24032924_24033065
0.00000
-0.679
DataSet_01_71
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AP1G2
24033254_24033368_24033368_24033597_24032924_24033065
0.00000
-0.454
DataSet_01_71
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ARIH2
48964894_48965246_48999044_48999112_48960180_48960244
0.00020
0.157
DataSet_01_71
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ASAP2
9520869_9520937_9525373_9525487_9519072_9519188
0.00378
0.235
DataSet_01_71
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ASL
65554262_65554322_65554598_65554682_65554077_65554162
0.00581
0.104
DataSet_01_71
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Showing 1 to 10 of 115 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AADAT
171010762_171010887_171010774_171010887_171009546_171009715
0.00536
0.237
DataSet_01_71
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AKR1C2
5041391_5042858_5042741_5042858_5040816_5040939
0.00101
-0.12
DataSet_01_71
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ANO9
429473_429652_429569_429652_428721_428826
0.00620
-0.039
DataSet_01_71
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APOM
31624248_31624410_31624248_31624403_31625001_31625075
0.00111
0.037
DataSet_01_71
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BDH1
197299979_197300194_197300051_197300194_197273231_197273357
0.00051
0.104
DataSet_01_71
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C4BPB
207264988_207265165_207264988_207265050_207269866_207269960
0.00818
-0.5
DataSet_01_71
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CEP95
62527043_62527140_62527043_62527136_62528007_62528140
0.00386
-0.151
DataSet_01_71
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CFL2
35182459_35182767_35182602_35182767_35182265_35182342
0.00414
-0.098
DataSet_01_71
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CPNE1
34220084_34220307_34220232_34220307_34219866_34219947
0.00012
0.08
DataSet_01_71
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CPNE1
34218662_34218883_34218822_34218883_34218360_34218412
0.00734
-0.496
DataSet_01_71
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Showing 1 to 10 of 38 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACTG1
79478213_79478829_79478213_79478652_79478928_79479168
0.00367
0.008
DataSet_01_71
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ADPGK
73043709_73045236_73043709_73045233_73047896_73047995
0.00070
0.226
DataSet_01_71
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AP1G2
24030720_24030888_24030720_24030844_24031170_24031262
0.00000
-0.113
DataSet_01_71
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APOA2
161193151_161193247_161193151_161193215_161193384_161193418
0.00000
-0.048
DataSet_01_71
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APOA2
161192707_161192840_161192707_161192784_161193139_161193215
0.00008
0.009
DataSet_01_71
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ATP6V1G2-DDX39B
31508190_31508343_31508190_31508311_31509726_31509925
0.00026
0.157
DataSet_01_71
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AURKB
8111055_8111219_8111055_8111158_8113847_8113899
0.00868
-0.195
DataSet_01_71
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B4GALT3
161141755_161141879_161141755_161141854_161142016_161142200
0.00428
0.041
DataSet_01_71
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BIRC5
76212046_76212862_76212744_76212862_76210760_76210870
0.00905
0.242
DataSet_01_71
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C11orf80
66571465_66571661_66571468_66571661_66568501_66568573
0.00372
0.268
DataSet_01_71
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Showing 1 to 10 of 74 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AKAP8L
15514285_15514526_15514285_15514366_15514463_15514526
0.00886
-0.086
DataSet_01_71
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AMT
49457142_49457775_49457142_49457221_49457643_49457775
0.00884
-0.091
DataSet_01_71
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ANAPC5
121756079_121756411_121756079_121756227_121756303_121756411
0.00400
0.095
DataSet_01_71
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AP1G2
24030720_24031624_24030720_24030844_24031170_24031624
0.00267
-0.114
DataSet_01_71
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ATP13A1
19756455_19756794_19756455_19756599_19756682_19756794
0.00443
-0.059
DataSet_01_71
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AUP1
74756258_74756626_74756258_74756409_74756488_74756626
0.00130
0.038
DataSet_01_71
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BRD2
32944338_32945347_32944338_32944713_32945218_32945347
0.00000
0.096
DataSet_01_71
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BRD2
32944338_32945347_32944338_32944713_32945036_32945347
0.00912
0.157
DataSet_01_71
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CAPRIN2
30867892_30869610_30867892_30868078_30869441_30869610
0.00097
0.168
DataSet_01_71
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CD46
207932983_207934791_207932983_207933069_207934593_207934791
0.00073
0.037
DataSet_01_71
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
16889502
T
C
0.00516
NBPF1
-
TRUE
L1MC4
SINE,Alu
chr1
1650657
C
G
0.00379
CDK11B,CDK11A
-
FALSE
chr1
23636277
A
T
0.00188
HNRNPR
-
FALSE
chr1
118502771
A
G
0.00466
WDR3,SPAG17
+,-
FALSE
(GT)n
SINE,Alu
chr1
1595602
A
G
9.14189E-05
CDK11B,SLC35E2B
-
FALSE
AluJr
SINE,Alu
chr1
38326643
T
C
0.00458
INPP5B
-
TRUE
AluJr
SINE,Alu
chr1
16269737
C
T
0.00816
ZBTB17
-
FALSE
chr1
45452227
G
C
0.00279
EIF2B3
-
FALSE
chr1
36068370
T
C
4.62049E-05
PSMB2
-
TRUE
AluSc
SINE,Alu
chr1
16912099
G
C
0.00450
NBPF1
-
FALSE
Showing 1 to 10 of 481 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression