RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	145284883	A	G	0.00329	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr1	78342729	A	G	0.00175	MIGA1	+	TRUE	FRAM	SINE,Alu
chr3	88205579	G	T	2.47620E-05	C3orf38	+	FALSE
chr1	144930596	C	A	0.00103	NBPF20,PDE4DIP	+,-	FALSE
chr20	309186	A	G	0.00665	SOX12	+	FALSE	A-rich	SINE,Alu
chr1	21101368	T	C	0.00031	HP1BP3	-	TRUE	AluSc	SINE,Alu
chr5	79923361	T	C	0.00013	DHFR	-	TRUE	AluJr	SINE,Alu
chr7	22981942	G	A	0.00041	FAM126A	-	FALSE
chr12	100562935	G	T	0.00074	GOLGA2P5	-	FALSE	AluSg	SINE,Alu
chr1	179042719	A	G	2.68049E-06	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr3	14986111	T	C	0.00000	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr8	12880299	A	G	1.70760E-05	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr3	195963910	C	T	0.00149		.	FALSE
chr1	205684067	T	C	0.00499	NUCKS1	-	FALSE
chr3	15113656	T	C	1.73787E-06	RBSN	-	TRUE	AluSz6	SINE,Alu
chr6	47592459	A	G	0.00789	CD2AP	+	FALSE
chr8	141530799	G	A	0.00525		.	FALSE
chr13	110407579	T	G	0.00751	IRS2	-	FALSE	(T)n	SINE,Alu
chr21	47676711	G	A	0.00316	MCM3AP	-	FALSE
chr6	44222158	T	A	0.00781	SLC35B2	-	FALSE
chr1	214525603	A	G	0.00047	PTPN14	-	FALSE
chr1	220231959	T	C	2.75997E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr5	40982394	C	T	0.00037	C7	+	FALSE	AluSx1	SINE,Alu
chr4	17802931	T	C	0.00951	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	32637068	G	T	0.00146	KPNA6	+	FALSE
chr3	73115786	T	C	0.00470	PPP4R2	+	FALSE
chr1	202696878	C	T	0.00159	KDM5B	-	FALSE
chr1	45280426	A	G	0.00802		.	FALSE	AluSx	SINE,Alu
chr2	112252630	A	C	0.00040	MIR4435-2HG	-	FALSE
chr2	132278713	T	C	0.00317	LOC150776	+	FALSE
chr6	42855979	A	G	8.12389E-06	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	128951941	A	G	0.00624	UGGT1	+	TRUE	AluSx1	SINE,Alu
chr1	145368665	G	A	0.00031	NBPF20,NBPF10	+	FALSE
chr4	2940485	T	C	0.00676	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	207942336	A	G	0.00586	CD46	+	TRUE	AluSg4	SINE,Alu
chr7	100279138	A	T	0.00741	GIGYF1	-	FALSE	A-rich	SINE,Alu
chr1	145688664	A	T	0.00087	NBPF20,NBPF10,RNF115	+	FALSE
chr1	201846634	C	A	0.00852	IPO9	+	FALSE	(CA)n	SINE,Alu
chr5	96366330	G	C	0.00251		.	FALSE	(TG)n	SINE,Alu
chr1	3761479	C	T	0.00226	CEP104	-	FALSE
chr2	1637648	T	C	9.03854E-11	PXDN	-	FALSE
chr1	144930596	C	A	0.00356	NBPF20,PDE4DIP	+,-	FALSE
chr14	31916782	T	C	4.67250E-05	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr8	41399648	A	G	0.00037	LOC102723729,GINS4	+,-	FALSE	AluSx3	SINE,Alu
chr12	98942696	A	G	3.06836E-07	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	53289892	A	G	0.00079	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr2	242173247	G	A	0.00345	HDLBP	-	FALSE
chr1	51873951	G	A	0.00588	EPS15	-	FALSE
chr10	79552092	C	T	0.00159	DLG5	-	FALSE
chr2	201774264	T	C	0.00639		.	FALSE	AluSz	SINE,Alu
chr3	160213317	T	A	0.00208	KPNA4	-	FALSE
chr1	52816612	T	C	0.00890	CC2D1B	-	TRUE	AluSx1	SINE,Alu
chr17	65335292	T	C	6.31480E-06	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	77759578	A	G	0.00031	AK5	+	FALSE
chr3	39438321	A	T	6.25124E-06	SLC25A38	+	FALSE
chr2	55516940	A	C	0.00389	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr19	17412218	C	T	0.00790	ABHD8	-	FALSE
chr5	40829980	T	C	0.00752		.	FALSE	AluSp	SINE,Alu
chr7	75958151	G	C	0.00250	YWHAG	-	FALSE
chr8	6263057	A	C	0.00419	LOC100287015	-	FALSE
chr7	17384818	A	G	0.00241	AHR	+	TRUE	AluSc	SINE,Alu
chr1	79110518	A	G	0.00997	IFI44L	+	FALSE
chr3	15113885	T	C	0.00094	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	45975358	A	G	0.00089	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	10519190	T	C	0.00971		.	FALSE	AluSx3	SINE,Alu
chr5	125961554	A	G	0.00355	PHAX	+	TRUE	AluSz6	SINE,Alu
chr11	8709315	A	G	0.00307	RPL27A	+	TRUE	AluYk2	SINE,Alu
chr10	72648336	C	T	0.00461	PCBD1	-	FALSE	(GGCCG)n	SINE,Alu
chrX	152916233	C	A	0.00758	DUSP9	+	FALSE
chr1	65690461	G	A	0.00115	AK4	+	FALSE
chr8	128752685	G	A	2.94991E-09	MYC	+	FALSE
chr1	171561203	T	G	0.00119	PRRC2C	+	FALSE
chr3	120046601	G	T	0.00282	LRRC58	-	FALSE	AluSx	SINE,Alu
chr1	25894472	C	G	0.00594	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr6	42856118	A	G	0.00743	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	154987526	C	T	0.00218	ZBTB7B	+	FALSE
chr1	145293428	G	C	0.00855	NBPF20,NBPF10	+	FALSE
chr1	11982544	T	C	4.37710E-05	KIAA2013	-	FALSE
chr1	145688943	A	G	0.00492	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	113672616	A	G	0.00553		.	FALSE	AluJb	SINE,Alu
chr1	33148740	A	G	0.00210	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	9990314	T	A	0.00017	LZIC	-	FALSE
chr3	15094061	G	A	0.00188	MRPS25	-	FALSE
chr1	32661594	C	T	0.00725	TXLNA	+	FALSE	(T)n	SINE,Alu
chr1	16893813	A	G	0.00255	NBPF1	-	FALSE
chr1	33149496	A	G	0.00662	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr20	25428384	A	G	0.00195	GINS1	+	TRUE	AluSz	SINE,Alu
chr5	125962344	A	G	0.00101	PHAX	+	TRUE	AluSc	SINE,Alu
chr5	96368471	G	T	3.92809E-06		.	FALSE
chr1	44685732	T	C	8.08877E-10	DMAP1	+	FALSE
chr1	3545200	G	A	0.00676	TPRG1L	+	FALSE
chr5	125961647	A	G	1.53189E-07	PHAX	+	FALSE	AluSz6	SINE,Alu
chr1	165877666	T	C	0.00327	UCK2	+	FALSE	(T)n	SINE,Alu
chr4	2743678	G	A	0.00170	TNIP2	-	FALSE
chr1	28261662	A	G	0.01000	SMPDL3B	+	FALSE
chr2	74686329	C	T	0.00640	INO80B-WBP1,WBP1	+	FALSE
chr15	101845309	A	G	0.00689	PCSK6	-	FALSE
chr2	48025764	C	T	0.00722	MSH6	+	FALSE
chr2	74442548	C	T	0.00035		.	FALSE
chr1	19447843	C	G	0.00345	UBR4	-	FALSE
chr10	121588038	A	C	0.00100	INPP5F	+	FALSE
chr16	10623688	T	C	0.00766	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	10519951	T	C	0.00499		.	FALSE	AluJr	SINE,Alu
chr2	128064448	G	T	0.00637	MAP3K2	-	FALSE	(GT)n	SINE,Alu
chr1	36067760	T	C	0.00044	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	198572082	T	C	0.00093	MARS2	+	FALSE
chr1	109746601	A	G	0.00024	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr2	74375276	A	C	0.00328	BOLA3-AS1	+	FALSE
chr1	92147985	C	A	0.00370	TGFBR3	-	FALSE
chr1	27733305	A	C	0.00374	WASF2	-	FALSE
chr9	96439041	A	T	0.00751	PHF2	+	FALSE
chr1	36067752	T	C	0.00075	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	10520130	T	C	0.00355		.	FALSE	AluSx	SINE,Alu
chr2	69688901	T	C	0.00503	AAK1	-	TRUE	AluSq2	SINE,Alu
chr1	28836048	G	A	0.00035	SNHG3,RCC1	+	FALSE	AluSx4	SINE,Alu
chr2	69685864	A	C	0.00610	AAK1	-	FALSE	(CA)n	SINE,Alu
chr1	31732601	A	T	0.00479	SNRNP40	-	FALSE
chr2	101622888	T	A	0.00210	RPL31	+	FALSE
chr17	57279234	A	G	0.00293	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	9163110	T	C	4.21626E-05		.	FALSE	FRAM	SINE,Alu
chr3	45636213	C	G	0.00240		.	FALSE
chr2	152334055	A	G	0.00064		.	FALSE	AluY	SINE,Alu
chr7	44800040	C	A	0.00565	ZMIZ2	+	FALSE
chr3	186502665	C	T	0.00637	EIF4A2	+	FALSE
chr19	19793876	A	G	0.00080	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr12	125513906	C	A	0.00464		.	FALSE	AluSx1	SINE,Alu
chr1	19586520	A	G	6.58771E-06	MRTO4	+	TRUE	AluSz	SINE,Alu
chr4	3514695	A	G	1.35580E-12	LRPAP1	-	FALSE
chr3	189712010	G	A	1.42873E-07	P3H2	-	FALSE
chr5	176883676	A	T	0.00456	DBN1	-	FALSE	(A)n	SINE,Alu
chr10	1086797	A	C	0.00499	IDI2-AS1,IDI1	+,-	FALSE
chr4	17488286	T	G	0.00027	QDPR	-	FALSE
chr5	180001389	G	A	0.00138	CNOT6	+	FALSE
chr1	1597403	C	T	0.00015	CDK11B,SLC35E2B	-	FALSE
chr19	583145	G	A	0.00227	BSG	+	FALSE
chrX	123046695	A	G	0.00054	XIAP	+	TRUE	AluSz	SINE,Alu
chr16	75479331	T	C	0.00725	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr1	114443608	A	G	0.00147	AP4B1-AS1,AP4B1	+,-	FALSE	AluSp	SINE,Alu
chr1	145500933	C	T	0.00982	NBPF20,NBPF10,LIX1L	+	FALSE
chr1	148251083	T	C	0.00041	NBPF8,NBPF14,NBPF9	-	FALSE	L1MC4	SINE,Alu
chr6	36894340	A	G	0.00575	C6orf89	+	FALSE	GA-rich	SINE,Alu
chr1	1345051	A	G	0.00362		.	FALSE	AluSg	SINE,Alu
chr1	19543249	T	C	0.00559	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	11783105	A	G	4.69824E-05		.	FALSE	AluSx	SINE,Alu
chr1	16717888	G	A	0.00979	SZRD1	+	FALSE
chr1	87379493	G	A	0.00353	SEP15	-	FALSE
chr2	132049924	A	G	0.00338	LOC440910	+	FALSE	AluSg4	SINE,Alu
chr2	38971040	G	T	0.00651	SRSF7	-	FALSE
chr8	42882287	A	G	0.00771	HOOK3	+	TRUE	AluSx1	SINE,Alu
chr3	195963397	G	A	0.00037		.	FALSE
chr2	20401856	T	G	0.00265	SDC1	-	FALSE
chr2	37429627	A	G	0.00027	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr2	3609064	G	A	0.00614	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr3	10192633	A	G	8.20807E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	35648712	G	A	0.00298	SFPQ	-	FALSE
chr16	81064534	A	G	0.00480	CENPN	+	TRUE	AluSg	SINE,Alu
chr3	156258230	T	C	0.00011	SSR3	-	TRUE	AluYk3	SINE,Alu
chr2	206862015	G	A	0.00368	INO80D	-	FALSE
chr2	242447628	T	G	0.00020	STK25	-	FALSE
chr1	16890421	G	A	0.00024	NBPF1	-	FALSE
chr1	20976759	C	T	2.31016E-05	PINK1,PINK1-AS	+,-	FALSE
chr3	45125417	G	A	0.00024	CDCP1	-	FALSE	AluJb	SINE,Alu
chr3	99515750	A	G	2.61553E-11	MIR548G	-	FALSE
chr1	27107948	G	A	0.00177	ARID1A	+	FALSE
chrX	9686187	T	C	0.00420	TBL1X	+	FALSE
chr5	74324902	C	T	0.00574	GCNT4	-	FALSE
chr2	120980896	T	G	0.00132	TMEM185B	-	FALSE
chr1	28836973	A	G	0.00017	SNHG3,RCC1	+	TRUE	AluSc	SINE,Alu
chr3	148748198	G	A	3.62985E-05	HLTF	-	FALSE
chr1	6283264	T	C	0.00127	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	151326173	A	C	0.00143	RND3	-	FALSE
chr19	11257634	T	C	0.00823	SPC24	-	TRUE	AluSp	SINE,Alu
chr1	26802457	C	A	0.00962	HMGN2	+	FALSE
chr2	37331578	T	C	0.00675		.	FALSE	AluJb	SINE,Alu
chr1	1650787	T	C	0.00426	CDK11B,CDK11A	-	FALSE
chr15	85184830	T	C	0.00895	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr3	49452957	A	T	0.00066	TCTA	+	FALSE	AluSg	SINE,Alu
chr3	15112612	T	C	0.00634	RBSN	-	TRUE	AluSq2	SINE,Alu
chr1	16928622	C	A	0.00197	NBPF1	-	FALSE
chr1	6282401	T	C	0.00026	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	191067764	A	T	0.00165	C2orf88	+	FALSE
chr1	142619487	A	G	0.00511		.	FALSE
chr2	29023124	G	T	0.00477	PPP1CB	+	FALSE
chr5	36143392	C	T	0.00625	LMBRD2	-	FALSE
chr1	20976075	T	C	0.00135	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr1	145369556	A	G	0.00086	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr5	135391374	C	T	3.54402E-06	TGFBI	+	FALSE
chr1	16893763	T	C	0.00159	NBPF1	-	FALSE
chr3	156259295	T	C	0.00039	SSR3	-	TRUE	AluSq2	SINE,Alu
chr1	65897981	G	A	0.00025	LEPR,LEPROT	+	FALSE
chr17	37006249	T	C	0.00774		.	FALSE	AluSx	SINE,Alu
chr1	6283306	T	C	0.00275	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	110951224	A	G	0.00352	LAMTOR5-AS1	+	TRUE	AluJr	SINE,Alu
chr19	42375585	A	G	0.00022		.	FALSE	AluSx	SINE,Alu
chr19	58374130	C	T	0.00124	ZNF587	+	FALSE
chr1	41326886	C	G	0.00085	CITED4	-	FALSE
chr2	203922075	A	G	0.00058	NBEAL1	+	FALSE
chr1	36068276	T	C	5.36857E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	230416414	T	G	0.00360	GALNT2	+	FALSE
chr2	37334146	T	C	0.00039	EIF2AK2	-	TRUE	AluSz	SINE,Alu
chr1	148558170	T	C	0.00235		.	FALSE	AluJb	SINE,Alu
chr6	26368938	C	T	0.00121	BTN3A2	+	FALSE
chr1	160967816	T	C	0.00162	F11R	-	TRUE	AluSp	SINE,Alu
chr7	6501820	A	T	0.00288	KDELR2	-	FALSE
chr1	244869241	C	A	0.00213	DESI2	+	FALSE
chr1	16944809	G	C	9.47535E-05	CROCCP2	-	FALSE
chr1	6282318	T	C	0.00418	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	10193358	A	G	1.11864E-10	VHL	+	TRUE	L1ME4a	SINE,Alu
chr4	190883001	C	G	0.00297	FRG1	+	FALSE
chr1	47746678	G	C	0.00374	STIL	-	FALSE
chr1	28785597	G	C	0.00595	PHACTR4	+	FALSE
chr1	19543356	T	C	0.00110	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr2	174090928	G	C	0.00852	ZAK,MLK7-AS1	+,-	FALSE
chr3	172115902	G	A	9.15134E-06	FNDC3B	+	FALSE
chr3	44791553	T	C	1.10852E-07	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr2	242615532	C	A	0.00603	DTYMK	-	FALSE
chr3	181430143	G	T	0.00126	SOX2-OT,SOX2	+	FALSE
chr2	86252214	T	C	0.00930	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr1	68940885	G	A	0.00500	DEPDC1	-	FALSE	MIR	SINE,Alu
chr2	99812817	A	G	0.00018	MRPL30	+	TRUE	AluJb	SINE,Alu
chr10	120801786	G	C	0.00752	EIF3A	-	FALSE
chr1	10517688	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr1	6283305	T	C	0.00554	ICMT	-	TRUE	AluSx3	SINE,Alu
chr9	70648427	G	A	0.00096		.	FALSE	TAR1	SINE,Alu
chr9	116812614	A	G	0.00674	ZNF618	+	FALSE
chr4	6644327	A	G	0.00000	MRFAP1	+	FALSE
chr1	16344402	G	A	0.00168	HSPB7	-	FALSE	L3	SINE,Alu
chr4	57326159	A	G	0.00019	PAICS	+	TRUE	AluJr	SINE,Alu
chr1	156613632	G	A	0.00187	BCAN	+	FALSE
chr1	990280	C	T	0.00243	AGRN	+	FALSE
chr1	109465170	T	C	0.00565	GPSM2	+	FALSE
chr7	138265310	A	G	0.00121	TRIM24	+	FALSE
chr1	78414310	C	A	0.00131	FUBP1	-	FALSE

RBP	XRN2
Knock-Method	shRNA
RBP Family	XRN_N
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR347ZHQ
Platform	HiSeq
Pubmed ID	32252787

XRN2 - Target Gene Network