RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr14	74179051	T	C	0.00982	PNMA1	-	FALSE	Charlie15b	SINE,Alu
chr4	3219613	A	C	0.00361	HTT	+	FALSE
chr1	24296869	G	T	0.00505		.	FALSE	AluSg	SINE,Alu
chr17	65334868	T	C	0.00096	PSMD12	-	TRUE	AluSq	SINE,Alu
chr3	45722381	A	G	0.00996	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr12	98942621	A	G	4.05531E-12	TMPO	+	TRUE	AluSc	SINE,Alu
chr19	58371837	A	G	0.00329	ZNF587	+	TRUE	AluSz	SINE,Alu
chr2	114356360	G	A	0.00520	WASH2P	+	FALSE
chr1	242251696	C	T	0.00335	PLD5	-	FALSE
chr1	23631625	A	G	0.00536	HNRNPR	-	FALSE	UCON44	SINE,Alu
chr15	41591418	A	G	6.38388E-06	OIP5-AS1	+	TRUE	AluSx	SINE,Alu
chr7	6048973	C	A	8.39369E-05	AIMP2	+	FALSE
chr1	10520764	T	C	0.00542	DFFA	-	TRUE	AluSc8	SINE,Alu
chr17	48771488	C	A	0.00148	ANKRD40	-	FALSE	AluSz	SINE,Alu
chr1	22853141	G	A	0.00060	ZBTB40	+	FALSE
chr1	204525548	A	G	0.00501	MDM4	+	TRUE	AluSz	SINE,Alu
chr6	31112484	C	T	0.00538		.	FALSE
chr1	163288931	G	A	0.00284	RGS5	-	FALSE	MamRep1527	SINE,Alu
chr8	1730500	A	G	3.50527E-05	CLN8	+	TRUE	AluSx1	SINE,Alu
chr1	33149443	A	G	0.00327	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	1309464	C	T	1.11022E-16	AURKAIP1	-	FALSE
chr4	141600320	A	G	0.00179	TBC1D9	-	FALSE
chr1	1647893	C	T	0.00509	CDK11B,CDK11A	-	FALSE
chr1	1252443	T	C	8.33820E-06	CPSF3L	-	TRUE	AluJr	SINE,Alu
chr9	70648427	G	A	0.00096		.	FALSE	TAR1	SINE,Alu
chr1	148004422	T	A	0.00017	NBPF8	-	FALSE
chr1	32742441	G	A	2.50972E-10	LCK	+	FALSE
chr2	61369774	T	C	0.00267	LOC339803	-	TRUE	AluSx	SINE,Alu
chr10	60157509	T	G	0.00296	TFAM	+	FALSE
chr19	39982631	A	G	0.00316	TIMM50	+	TRUE	AluJr	SINE,Alu
chr1	220231946	T	C	0.00439	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	28921019	A	G	0.00030	RAB42	+	TRUE	AluSx	SINE,Alu
chr3	45722396	A	G	0.00231	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr14	90865627	T	C	0.00162	CALM1	+	FALSE
chr11	68523472	T	C	0.00649	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	10520331	C	T	0.00060		.	FALSE	AluSx1	SINE,Alu
chr5	79279309	T	G	0.00167	MTX3	-	FALSE
chr1	36068184	T	C	0.00150	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	162497739	G	C	0.00138	UHMK1	+	FALSE
chr8	128944712	A	C	0.00033	PVT1	+	FALSE
chr2	37327702	T	C	0.00119		.	FALSE
chr1	8413839	A	G	0.00776	RERE	-	FALSE
chr4	3769307	C	A	0.00173	ADRA2C	+	FALSE
chr18	10691357	G	A	0.00082	PIEZO2	-	FALSE
chr3	14526625	T	G	0.00414	SLC6A6	+	FALSE
chr1	160967855	T	C	0.00042	F11R	-	TRUE	AluSp	SINE,Alu
chr6	31379931	G	A	0.00093		.	FALSE
chr1	6582176	T	C	0.00694	NOL9	-	TRUE	AluSq4	SINE,Alu
chr2	234749258	T	C	0.00710	HJURP	-	FALSE
chr1	26774224	A	G	0.00349	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr2	71214819	A	T	0.00346	TEX261	-	FALSE
chr1	45976723	T	C	0.00340	MMACHC,PRDX1	+,-	FALSE
chr1	2333763	G	A	0.00867	RER1	+	FALSE
chr5	175816758	T	A	0.00528		.	FALSE
chr2	37328013	T	C	0.00364		.	FALSE
chr1	150937771	T	A	0.00026	CERS2	-	FALSE	(ATTTTTT)n	SINE,Alu
chr14	36784095	C	T	0.00866	MBIP	-	FALSE
chr2	191224981	G	T	0.00245	INPP1	+	FALSE
chr15	102516561	T	C	0.00805	WASH3P	+	FALSE
chr1	35223881	G	A	0.00228	GJB5	+	FALSE
chr4	39550978	T	C	0.00023	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	33148210	A	G	0.00778	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	10520202	T	C	0.00825		.	FALSE	AluSx	SINE,Alu
chr3	12598618	C	T	0.00812	MKRN2	+	FALSE
chr1	113212976	C	T	0.00332	CAPZA1	+	FALSE
chr1	113212976	C	T	0.00904	CAPZA1	+	FALSE
chr11	32623987	T	A	5.29256E-06	CCDC73,EIF3M	+,-	FALSE
chr1	35899684	C	T	0.00051	KIAA0319L	-	FALSE	AluSc8	SINE,Alu
chr1	6283264	T	C	0.00287	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	203744550	T	C	0.00037		.	FALSE	AluSx1	SINE,Alu
chr1	201846635	A	T	0.00293	IPO9	+	FALSE	(CA)n	SINE,Alu
chr2	219100202	C	T	0.00027	ARPC2	+	FALSE	AluJr	SINE,Alu
chr1	214527252	G	A	0.00181	PTPN14	-	FALSE	MADE2	SINE,Alu
chr1	63790503	T	C	0.00289	FOXD3	+	FALSE
chr1	10043053	A	G	0.00042	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr6	42856330	A	G	2.22045E-16	RPL7L1	+	TRUE
chr1	16933643	A	G	0.00279	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	16933625	A	G	0.00536	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	789187	C	G	5.07459E-05	LINC01128	+	FALSE
chr16	3207362	A	T	1.09222E-05		.	FALSE
chr4	177252238	A	G	3.85736E-09	SPCS3	+	TRUE
chr1	26608021	T	A	0.00069		.	FALSE
chr1	16944809	G	C	9.47535E-05	CROCCP2	-	FALSE
chr1	16891365	G	A	1.42078E-05	NBPF1	-	FALSE
chr8	12283473	C	T	0.00582	FAM86B2	-	FALSE
chr1	24934236	A	G	0.00596	NCMAP	+	TRUE	AluSz6	SINE,Alu
chr9	28403	G	T	1.21037E-06	WASH1	-	FALSE	MIR	SINE,Alu
chr11	60658566	A	C	0.00387	PRPF19	-	FALSE
chr1	28906337	A	G	0.00810	SNHG12,SNORA61	-	FALSE
chr2	172178680	T	C	9.91686E-05	METTL8	-	TRUE	AluSx3	SINE,Alu
chr1	156613632	G	A	0.00187	BCAN	+	FALSE
chr1	19542631	T	C	0.00176	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr5	56177846	G	C	0.00952	MAP3K1	+	FALSE
chr1	15993013	G	A	1.16652E-10		.	FALSE
chr1	229730452	G	A	0.00236	TAF5L	-	FALSE
chr16	88763958	G	A	7.55606E-05	RNF166	-	FALSE
chr12	51325349	C	G	0.00225	METTL7A	+	FALSE	AluSq2	SINE,Alu
chr9	136209404	G	A	0.00361	MED22	-	FALSE	(CAGGG)n	SINE,Alu
chr2	91805833	A	G	1.63980E-13		.	FALSE	MLT1H1	SINE,Alu
chr2	36776054	C	T	0.00117	CRIM1	+	FALSE
chr1	120267061	C	A	0.00181	PHGDH	+	FALSE
chr6	44222158	T	A	0.00856	SLC35B2	-	FALSE
chr1	109474776	A	G	0.00088	GPSM2,CLCC1	+,-	FALSE	AluSz	SINE,Alu
chr1	183596136	A	G	0.00123	ARPC5	-	FALSE
chr1	16890639	C	T	5.60894E-05	NBPF1	-	FALSE
chr3	197611262	A	G	0.00208		.	FALSE	AluSx1	SINE,Alu
chr1	46076462	A	G	1.23194E-07	NASP	+	TRUE	AluSx	SINE,Alu
chr1	153963246	G	A	6.32081E-05	RPS27	+	FALSE
chr2	96915238	T	C	0.00510		.	FALSE	AluJr	SINE,Alu
chr7	156763172	A	G	0.00874	NOM1	+	TRUE	AluSx	SINE,Alu
chr1	100676277	A	G	0.00135	DBT	-	FALSE
chr1	32637068	G	T	0.00146	KPNA6	+	FALSE
chr5	125961554	A	G	0.00355	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	33086754	T	C	0.00065		.	FALSE	AluY	SINE,Alu
chr1	179326296	A	G	0.00171	SOAT1	+	TRUE
chr1	40214148	A	G	0.00426	PPIE	+	TRUE	AluSq2	SINE,Alu
chr1	179044206	A	G	0.00015	FAM20B	+	TRUE	AluSx	SINE,Alu
chr2	69330284	G	A	0.00373	ANTXR1	+	FALSE	MER91A	SINE,Alu
chr1	28825427	A	G	0.00484	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr12	96259951	G	A	0.00328	SNRPF	+	FALSE
chr17	73940167	T	C	0.00035	ACOX1	-	TRUE	AluJb	SINE,Alu
chr4	25278988	T	C	2.09007E-08	PI4K2B	+	FALSE
chr1	70718276	G	T	0.00836		.	FALSE
chr14	23300663	G	A	0.00120	MRPL52	+	FALSE	MIRb	SINE,Alu
chr1	20977380	T	C	0.00695	PINK1,PINK1-AS	+,-	FALSE
chr3	196080531	T	C	0.00952	UBXN7	-	TRUE	AluSx	SINE,Alu
chr2	178129412	G	T	0.00071	NFE2L2	-	FALSE	(CGG)n	SINE,Alu
chr4	109733172	T	C	0.00480	COL25A1	-	FALSE
chr8	141530799	G	A	0.00525		.	FALSE
chrX	3526659	C	G	0.00188	PRKX	-	FALSE	(AC)n	SINE,Alu
chr5	138705183	T	A	9.01084E-05	PAIP2,SLC23A1	+,-	FALSE
chr15	22969232	G	A	0.00017	CYFIP1	+	FALSE
chr1	3546132	G	A	0.00113	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr3	196044973	C	T	0.00985	TCTEX1D2,TM4SF19-TCTEX1D2	-	FALSE
chr3	88191456	C	A	0.00694	CGGBP1,ZNF654	+,-	FALSE
chr1	26449341	A	G	0.00622	PDIK1L	+	FALSE
chr4	2516791	T	G	4.75740E-05	RNF4	+	FALSE
chr3	125248838	A	T	0.00899	OSBPL11	-	FALSE
chr1	26161129	A	C	0.00607	AUNIP	-	FALSE
chr9	137330711	T	A	0.00194	RXRA	+	FALSE	(GCTG)n	SINE,Alu
chr1	179327011	A	G	0.00930	SOAT1	+	TRUE
chr1	32641383	C	A	0.00112	KPNA6	+	FALSE	AluSx3	SINE,Alu
chr9	19063167	C	T	0.00539	HAUS6	-	FALSE
chr3	39138082	C	T	8.26379E-05	WDR48	+	FALSE
chr3	179116220	T	C	0.00233	GNB4	-	TRUE	AluSz6	SINE,Alu
chr3	15114385	T	C	0.00146	RBSN	-	TRUE	AluY	SINE,Alu
chr19	3540006	T	C	3.25622E-05	C19orf71	+	FALSE	AluJo	SINE,Alu
chr1	145290874	C	T	0.00380	NBPF20	+	FALSE
chr3	49142142	G	T	6.70614E-05	QARS	-	FALSE
chr1	144614931	G	A	0.00469	NBPF20	+	FALSE
chr10	102315864	T	A	0.00290		.	FALSE
chr1	25775374	C	T	0.00710	TMEM57	+	FALSE
chr3	172115476	A	G	0.00892	FNDC3B	+	FALSE	(A)n	SINE,Alu
chr1	145100772	A	G	0.00945	NBPF20,SEC22B	+	TRUE	AluSg4	SINE,Alu
chr3	119212012	A	C	0.00976	POGLUT1	+	FALSE
chr1	183187603	C	T	0.00357	LAMC2	+	FALSE
chr5	96110544	T	C	0.00295	ERAP1	-	TRUE
chr1	17730	C	A	0.00256	WASH7P	-	FALSE
chr19	18476206	A	G	0.00156	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr8	8750467	A	G	0.00131	MFHAS1	-	FALSE
chr1	26449327	A	G	0.00330	PDIK1L	+	FALSE
chr12	98942690	A	G	3.03569E-06	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	104097685	C	T	0.00721	RNPC3,AMY2B	+	FALSE
chr5	149829073	A	G	0.00866	RPS14	-	FALSE
chr1	156499969	T	C	8.53229E-06	IQGAP3	-	FALSE
chr19	53914807	A	G	4.44644E-06	ZNF765	+	TRUE	AluSp	SINE,Alu
chr8	11666384	C	T	0.00029	FDFT1	+	FALSE
chr1	114938247	G	A	0.00197	TRIM33	-	FALSE
chr3	88104167	T	C	0.00919	CGGBP1	-	FALSE
chr10	70277096	T	C	0.00229	SLC25A16	-	FALSE	L2c	SINE,Alu
chr1	570178	G	A	0.00787		.	FALSE
chr1	31905889	A	G	0.00565	SERINC2	+	FALSE
chr1	10519982	T	C	0.00572		.	FALSE	AluJr	SINE,Alu
chr1	53289852	A	G	0.00228	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr8	1730491	A	G	5.38446E-06	CLN8	+	TRUE	AluSx1	SINE,Alu
chr12	133298255	A	G	0.00016	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	211921723	A	G	4.36683E-06	LPGAT1	-	FALSE
chr2	68402796	C	T	0.00656	PNO1	+	FALSE
chr1	1595538	T	C	0.00586	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr17	5288078	A	G	0.00081	RABEP1	+	FALSE
chr2	242164677	A	G	0.00117	ANO7	+	TRUE	AluSg	SINE,Alu
chr1	171561203	T	G	0.00075	PRRC2C	+	FALSE
chr3	50150389	A	G	0.00046	RBM5	+	TRUE	AluSx	SINE,Alu
chr1	144852203	T	G	0.00518	NBPF20,PDE4DIP	+,-	FALSE
chr1	10520487	T	C	0.00559		.	FALSE	AluSx1	SINE,Alu
chr1	26226610	C	T	0.00955	STMN1	-	FALSE
chr9	140729536	C	A	0.00699	EHMT1	+	FALSE
chr1	193055149	A	G	0.00340	TROVE2	+	FALSE
chr1	184762627	T	C	0.00519	FAM129A	-	TRUE	AluSz	SINE,Alu
chr2	47398328	G	A	0.00434	CALM2	-	FALSE
chr13	20246634	T	G	0.00071	MPHOSPH8	+	FALSE
chr1	40537923	G	A	6.08919E-05	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	110950295	C	A	0.00359	LAMTOR5	-	FALSE
chr2	37330576	T	C	0.00055		.	FALSE	AluSq2	SINE,Alu
chr16	10623531	T	C	1.32618E-09	EMP2	-	TRUE	AluSp	SINE,Alu
chr3	195411991	C	A	0.00058	SDHAP2	+	FALSE
chr19	57804719	A	C	0.00361	ZNF460	+	FALSE
chr4	144475142	T	A	0.00375	SMARCA5	+	FALSE
chr8	26435509	T	C	0.00121	DPYSL2	+	FALSE	(TC)n	SINE,Alu
chr19	42753034	A	G	0.00883	ERF	-	FALSE
chr2	37328075	T	C	2.30710E-05		.	FALSE
chr2	32535865	A	G	0.00684		.	FALSE	AluJb	SINE,Alu
chr1	115259768	T	C	0.00156	CSDE1	-	FALSE
chr1	33139178	A	G	0.00108	RBBP4	+	TRUE	AluSx3	SINE,Alu
chr1	38326704	T	C	0.00328	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	44459935	T	C	0.00953	CCDC24	+	FALSE	AluJb	SINE,Alu
chr6	42857067	A	G	0.00310	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr14	103372464	C	A	0.00577	TRAF3	+	FALSE	(AC)n	SINE,Alu
chr16	25269014	G	C	0.00235		.	FALSE
chr1	40537944	C	A	2.58277E-05	CAP1	+	FALSE
chr3	155660773	A	G	0.00592		.	FALSE	AluSz	SINE,Alu
chr1	91990445	A	G	5.21972E-05	CDC7	+	FALSE	LFSINE_Vert	SINE,Alu
chr1	16890428	T	A	0.00233	NBPF1	-	FALSE
chr19	811933	C	T	0.00026	PTBP1	+	FALSE
chr1	46830257	C	T	0.00208	NSUN4	+	FALSE	AluSx1	SINE,Alu
chr6	35259646	G	C	0.00808	ZNF76	+	FALSE
chr1	9328213	A	G	0.00404	H6PD	+	TRUE	AluJr	SINE,Alu
chr6	79595097	A	G	0.00712	IRAK1BP1	+	FALSE
chr17	49042216	T	C	0.00746	SPAG9	-	TRUE	AluJb	SINE,Alu
chr8	30536078	T	C	0.00509	GSR	-	FALSE	AluJr	SINE,Alu
chr1	10042955	A	G	0.00131	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr5	170837887	T	A	0.00401	NPM1	+	FALSE
chr1	24935369	A	G	0.00454	NCMAP	+	TRUE	AluJb	SINE,Alu
chr1	244572645	T	G	0.00103	ADSS	-	FALSE
chr2	75888160	A	C	0.00368	MRPL19	+	FALSE	L1MB4	SINE,Alu
chr1	19810693	G	C	0.00042	CAPZB	-	FALSE
chr3	19992432	G	T	0.00017	RAB5A	+	FALSE
chr1	16574382	A	C	0.00704	FBXO42	-	FALSE
chr1	36067858	G	A	0.00293	PSMB2	-	FALSE	AluSz	SINE,Alu
chr1	120162587	G	A	0.00730	ZNF697	-	FALSE
chr5	40832555	A	T	0.00347	RPL37	-	FALSE
chr2	242384368	G	A	0.00031	FARP2	+	FALSE	AluJr	SINE,Alu
chr15	60678712	G	A	0.00801	ANXA2	-	FALSE
chr1	36690599	A	G	0.00406	THRAP3	+	FALSE
chr1	28661718	A	G	0.00520	MED18	+	TRUE	AluSg	SINE,Alu
chr12	120898658	A	G	0.00372	GATC	+	TRUE	AluY	SINE,Alu
chr1	36068052	G	T	1.43241E-12	PSMB2	-	FALSE	L1ME4b	SINE,Alu

RBP	RECQL
Knock-Method	shRNA
RBP Family	DEAD
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR310VND
Platform	HiSeq
Pubmed ID	32252787

RECQL - Target Gene Network