RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	144822066	A	G	0.00020	NBPF20,NBPF9	+	FALSE
chr1	16889575	T	C	0.00467	NBPF1	-	TRUE
chr3	194125524	C	T	0.00271	ATP13A3	-	FALSE
chr1	28662157	A	G	0.00159	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	9163402	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr1	36067760	T	C	0.00024	PSMB2	-	TRUE	AluSz	SINE,Alu
chr4	56237899	A	G	0.00503	SRD5A3,SRD5A3-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	144595935	G	A	0.00636	NBPF20	+	FALSE	AluJb	SINE,Alu
chr1	19542401	T	C	0.00052	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	156258227	T	C	0.00094	SSR3	-	TRUE	AluYk3	SINE,Alu
chr2	128602462	T	C	0.00298		.	FALSE	AluSq2	SINE,Alu
chr19	62927	G	A	0.00358	WASH5P	-	FALSE
chr1	145283733	A	G	0.00458	NBPF20,NOTCH2NL	+	FALSE
chr8	9639522	A	G	0.00823	TNKS	+	TRUE	MER53	SINE,Alu
chr1	10518733	T	C	0.00541		.	FALSE	AluSx1	SINE,Alu
chr1	45241211	C	T	0.00947		.	FALSE
chr1	1234095	C	A	0.00039	ACAP3	-	FALSE
chr16	2553869	A	T	0.00089	TBC1D24	+	FALSE
chr1	47905554	C	G	0.00297	FOXD2	+	FALSE
chr12	133297956	A	G	4.23080E-06	PGAM5	+	TRUE	AluJo	SINE,Alu
chr4	42022464	C	A	0.00059	SLC30A9	+	FALSE
chr2	54887287	C	T	7.50624E-05	SPTBN1	+	FALSE
chr1	153617980	A	G	8.13079E-05	CHTOP	+	FALSE
chr1	214525603	A	G	0.00047	PTPN14	-	FALSE
chr1	16913612	G	A	0.00145	NBPF1	-	FALSE
chr1	143399383	T	A	0.00053		.	FALSE	L1MC4	SINE,Alu
chr2	171608711	T	A	0.00492	LOC101926913	-	FALSE
chr1	19542456	T	C	0.00193	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr15	90819444	A	G	5.90002E-05		.	FALSE	AluSx	SINE,Alu
chr1	32661564	C	T	0.00058	TXLNA	+	FALSE	(T)n	SINE,Alu
chr19	9673274	T	C	0.00018		.	FALSE	Tigger1	SINE,Alu
chr1	85786957	T	G	0.00959	DDAH1	-	FALSE
chr1	143231313	G	A	0.00137		.	FALSE
chr2	109401284	G	C	0.00059	RANBP2	+	FALSE
chr2	37330612	T	C	0.00136		.	FALSE	AluSq2	SINE,Alu
chr1	47903063	G	C	0.00292	FOXD2	+	FALSE
chr6	3225721	C	G	4.80019E-07	TUBB2B	-	FALSE
chr3	196670090	G	A	6.78352E-09	NCBP2-AS2	+	FALSE
chr1	33087433	C	T	0.00687	ZBTB8OS	-	FALSE
chr1	6282401	T	C	0.00026	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	87211940	A	C	0.00164	SH3GLB1	+	FALSE
chr1	24134721	T	C	0.00448	HMGCL	-	FALSE
chr1	179042590	A	G	0.00152	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr15	33064742	C	G	0.00215	FMN1	-	FALSE
chr1	38158705	G	A	0.00168	CDCA8	+	FALSE
chr4	57801196	G	A	0.00485	REST	+	FALSE
chr3	127790249	A	G	0.00057	RUVBL1,SEC61A1	+,-	FALSE
chr1	46075663	A	G	0.00543	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	16912014	A	C	0.00704	NBPF1	-	FALSE
chr1	231154935	C	T	0.00093	FAM89A	-	FALSE
chr1	19586519	A	G	0.00239	MRTO4	+	TRUE	AluSz	SINE,Alu
chr8	100890423	C	A	0.00113	COX6C	-	FALSE
chr1	78414334	C	A	0.00702	FUBP1	-	FALSE	A-rich	SINE,Alu
chr3	124950419	C	A	0.00060	ZNF148	-	FALSE
chr1	168218573	A	G	0.00202		.	FALSE	AluSz	SINE,Alu
chr2	206981796	T	C	0.00137		.	FALSE	AluJb	SINE,Alu
chr14	67852040	A	G	4.57409E-05	EIF2S1	+	TRUE	AluJb	SINE,Alu
chr1	60340527	G	A	0.00027	HOOK1	+	FALSE
chr15	90375419	T	C	0.00521	C15orf38-AP3S2,AP3S2	-	TRUE	AluJr	SINE,Alu
chr1	26801736	A	T	0.00578	HMGN2	+	FALSE	(T)n	SINE,Alu
chr4	165998152	T	C	0.00288	TMEM192	-	TRUE	AluSx	SINE,Alu
chr7	44918732	T	C	0.00039	PURB	-	FALSE	AluSg	SINE,Alu
chr1	15818090	T	C	0.00089	CASP9	-	TRUE	AluJb	SINE,Alu
chr1	185014720	A	G	0.00989	RNF2	+	FALSE
chr20	18468633	C	A	3.51877E-10	RBBP9	-	FALSE
chr1	40539203	A	T	0.00179	PPT1	-	FALSE
chr1	26128521	A	G	0.00251	SEPN1	+	TRUE	AluJb	SINE,Alu
chr1	224575827	T	C	0.00214	WDR26	-	FALSE
chr1	28564612	C	A	0.00714	ATPIF1	+	FALSE
chr8	30643549	G	C	0.00257	PPP2CB	-	FALSE
chr2	20818517	T	C	0.00748	HS1BP3	-	FALSE
chr3	13670776	T	C	0.00336	FBLN2	+	FALSE
chr1	10367058	G	A	0.00328	KIF1B	+	FALSE
chr5	68858545	C	G	0.00034	GTF2H2C,GTF2H2C_2	+	FALSE	AluSz	SINE,Alu
chr1	33150643	G	A	0.00606	SYNC,RBBP4	+,-	FALSE	AluJo	SINE,Alu
chr1	33961147	T	G	0.00236	ZSCAN20	+	FALSE
chr8	146035211	T	C	0.00116	ZNF517	+	FALSE	AluSx1	SINE,Alu
chr1	117530217	C	T	0.00048	PTGFRN	+	FALSE
chr1	148252049	A	C	0.00666	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	206635245	T	C	0.00238	SRGAP2	+	FALSE
chr5	52388458	A	T	0.00152	ITGA2	+	FALSE
chr1	10221302	G	A	0.00119	UBE4B	+	FALSE
chr3	52800284	T	C	6.08396E-05	NEK4	-	FALSE
chr1	184761365	A	G	0.00758	FAM129A	-	FALSE	AluJo	SINE,Alu
chr15	42550445	T	C	0.00360	TMEM87A	-	FALSE
chr1	39988084	G	A	0.00060	BMP8A,PPIEL	+,-	FALSE
chr1	100489996	A	G	0.00069	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr5	149823791	G	T	0.00480		.	FALSE
chr1	144828707	G	T	0.00504	NBPF20,NBPF9	+	FALSE
chr4	73923043	T	C	0.00236	COX18	-	TRUE	AluSz	SINE,Alu
chr1	10519912	T	C	0.00737		.	FALSE	AluJr	SINE,Alu
chr1	41326886	C	G	0.00085	CITED4	-	FALSE
chr1	20975992	T	C	2.78350E-06	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr10	60047611	G	A	0.00855	CISD1	+	FALSE	(A)n	SINE,Alu
chr1	16918486	C	T	0.00415	NBPF1	-	FALSE
chr13	21547673	G	A	0.00974	LATS2	-	FALSE	(TG)n	SINE,Alu
chr3	191100561	C	A	2.52744E-07	CCDC50	+	FALSE
chr1	44072066	C	T	0.00846	PTPRF	+	FALSE
chr5	174956493	T	A	0.00466	SFXN1	+	FALSE
chr2	37331627	T	C	0.00910		.	FALSE	AluJb	SINE,Alu
chr10	33189606	A	G	0.00011	ITGB1	-	FALSE
chr1	168213597	A	G	0.00481		.	FALSE	AluSx1	SINE,Alu
chr1	142688506	T	C	4.54862E-05		.	FALSE
chr1	6283296	T	C	0.00106	ICMT	-	TRUE	AluSx3	SINE,Alu
chr5	37290400	T	C	0.00282		.	FALSE	AluSz	SINE,Alu
chr6	11185161	C	T	0.00297	NEDD9	-	FALSE
chr1	931807	G	A	0.00578		.	FALSE
chr2	128603088	T	C	0.00141		.	FALSE	AluSp	SINE,Alu
chr7	143003524	G	T	3.66232E-05	CASP2	+	FALSE	AluY	SINE,Alu
chr3	14986461	T	C	3.09385E-06	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	45474230	G	A	0.00012	HECTD3	-	FALSE
chr2	223436459	A	T	1.48017E-05	FARSB	-	FALSE
chr2	131104524	G	A	0.00912	IMP4	+	FALSE	L1MA9	SINE,Alu
chr1	11783105	A	G	4.69824E-05		.	FALSE	AluSx	SINE,Alu
chr17	25640295	T	A	0.00154	WSB1	+	FALSE
chr14	50792787	A	G	0.00278	ATP5S	+	TRUE	AluSx	SINE,Alu
chr6	42981525	G	C	0.00041	MEA1	-	FALSE
chr3	44869002	G	T	0.00012	KIF15	+	FALSE
chr1	144932151	G	T	0.00294	NBPF20,PDE4DIP	+,-	FALSE
chr1	19543282	T	C	0.00020	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	112266787	G	T	0.00642	FAM212B	-	FALSE
chr5	177576461	A	T	0.00659		.	FALSE
chr1	112170151	A	G	0.00137	RAP1A	+	FALSE	L1ME4a	SINE,Alu
chr3	33877626	G	A	2.14228E-08	PDCD6IP	+	FALSE
chr1	10364612	A	C	0.00860	KIF1B	+	FALSE
chr7	21941393	A	T	0.00937	CDCA7L	-	FALSE
chr1	70728523	A	G	0.00051	ANKRD13C	-	FALSE
chr1	22200473	C	T	0.00039	HSPG2	-	FALSE
chr1	85718132	C	A	0.00738	C1orf52	-	FALSE
chrX	3523058	A	C	0.00019	PRKX	-	FALSE	(AC)n	SINE,Alu
chr1	38174366	G	T	0.00879	CDCA8	+	FALSE
chr1	205686523	G	T	0.00640	NUCKS1	-	FALSE
chr16	1411034	A	G	0.00322	GNPTG	+	TRUE	AluSz	SINE,Alu
chr1	19238562	G	A	3.36880E-06	IFFO2	-	FALSE
chr2	98272734	A	G	0.00996	ACTR1B	-	FALSE
chr7	29962664	A	C	0.00077	SCRN1	-	FALSE
chr1	27662666	A	G	0.00799	TMEM222	+	FALSE
chrX	16781186	A	G	0.00220		.	FALSE	AluJo	SINE,Alu
chr7	38764358	T	C	0.00675	VPS41	-	TRUE	AluSp	SINE,Alu
chr1	6282255	T	C	0.00954	ICMT	-	TRUE	AluSz	SINE,Alu
chr5	137087812	A	C	0.00607	HNRNPA0	-	FALSE
chr17	29578724	C	T	0.00514	NF1	+	FALSE
chr8	11666384	C	T	0.00029	FDFT1	+	FALSE
chr6	111591610	A	G	0.00105		.	FALSE	FLAM_A	SINE,Alu
chr12	133298428	A	G	7.41792E-11	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	10520178	T	C	0.00112		.	FALSE	AluSx	SINE,Alu
chr3	142772593	G	A	0.00135	U2SURP	+	FALSE
chr1	193058937	C	T	0.00195	TROVE2	+	FALSE	AluSc	SINE,Alu
chr1	24934236	A	G	0.00596	NCMAP	+	TRUE	AluSz6	SINE,Alu
chrX	77083548	T	C	0.00205	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr1	900505	G	C	0.00388	KLHL17	+	FALSE
chr1	19566382	A	G	0.00513	LOC101927895,EMC1	+,-	FALSE
chr5	125961554	A	G	0.00355	PHAX	+	TRUE	AluSz6	SINE,Alu
chr3	179042866	A	G	0.00806	ZNF639	+	FALSE	AluSp	SINE,Alu
chr1	206566948	G	A	0.00879	SRGAP2	+	FALSE
chr1	23636028	T	A	0.00029	HNRNPR	-	FALSE
chr1	16929100	C	T	0.00249	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr1	179832748	G	C	7.50400E-12	TOR1AIP2	-	FALSE	FLAM_C	SINE,Alu
chr1	16910172	G	A	0.00023	NBPF1	-	FALSE
chr1	16890639	C	T	0.00095	NBPF1	-	FALSE
chr5	179665201	C	T	0.00037	MAPK9	-	FALSE	AluSx4	SINE,Alu
chr1	5937327	C	T	0.00703	NPHP4	-	FALSE
chr2	37330476	T	C	2.74271E-05		.	FALSE	AluSq2	SINE,Alu
chr5	125961649	A	G	0.00302	PHAX	+	TRUE	AluSz6	SINE,Alu
chr3	14986111	T	C	0.00653	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	205057482	A	T	0.00907	RBBP5	-	FALSE
chr1	19542621	T	C	1.78455E-05	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr22	38285016	A	G	0.00030		.	FALSE	AluSz	SINE,Alu
chr1	36068231	T	C	0.00935	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	100083425	G	A	0.00717	TOMM70	-	FALSE	FAM	SINE,Alu
chr2	55516937	G	T	0.00250	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr15	42503333	T	C	0.00120	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr1	86118685	G	A	0.00440	ZNHIT6	-	FALSE
chr3	78646942	T	G	0.00093	ROBO1	-	FALSE
chr1	148595665	A	G	0.00141	NBPF15	+	TRUE	L1MC4	SINE,Alu
chr1	144821888	C	G	0.00093	NBPF20,NBPF9	+	FALSE
chr12	48539888	C	A	0.00088	PFKM	+	FALSE
chr1	229631734	T	C	0.00611	NUP133	-	FALSE
chr1	142804471	C	G	0.00555		.	FALSE	MIRb	SINE,Alu
chr1	6583383	T	C	0.00305	NOL9	-	TRUE	AluSq	SINE,Alu
chr16	10623553	T	C	0.00024	EMP2	-	TRUE	AluSp	SINE,Alu
chr1	6582149	T	C	0.00173	NOL9	-	TRUE	AluSq4	SINE,Alu
chr1	16952298	A	C	2.15086E-05	CROCCP2	-	FALSE
chr1	204525667	A	G	3.94227E-05	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	40537944	C	A	0.00076	CAP1	+	FALSE
chr19	53155567	T	C	0.00137	ZNF83	-	TRUE	AluSg	SINE,Alu
chr2	204082516	G	A	0.00094	NBEAL1	+	FALSE
chr2	128950217	C	T	0.00255	UGGT1	+	FALSE
chrX	77083915	T	C	0.00075	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	89522646	G	C	0.00027	GBP1	-	FALSE
chr1	44463185	T	G	0.00969	SLC6A9	-	FALSE
chr7	29962586	G	A	0.00051	SCRN1	-	FALSE
chr1	31732677	G	A	0.00353	SNRNP40	-	FALSE	A-rich	SINE,Alu
chr1	10518052	T	C	0.00179		.	FALSE	AluJr	SINE,Alu
chr1	214524576	T	C	0.00337	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	16112795	A	G	4.56234E-06	FBLIM1	+	FALSE
chr17	41144609	G	A	0.00821	RUNDC1	+	FALSE
chr17	1683647	T	C	0.00763	SMYD4	-	TRUE	AluJb	SINE,Alu
chr1	10519190	T	C	0.00971		.	FALSE	AluSx3	SINE,Alu
chr9	114696428	G	T	0.00163	UGCG	+	FALSE	(TGTTTTT)n	SINE,Alu
chr2	196600548	G	T	0.00036	SLC39A10	+	FALSE
chr2	191067764	A	T	0.00165	C2orf88	+	FALSE
chr3	45722396	A	G	0.00337	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr1	46032311	A	G	0.00362	AKR1A1	+	FALSE
chr1	9643106	A	G	0.00088		.	FALSE	AluSx	SINE,Alu
chr1	109746601	A	G	0.00024	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	36067925	T	C	3.39837E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	214527252	G	A	0.00181	PTPN14	-	FALSE	MADE2	SINE,Alu
chr1	27678712	A	G	0.00215	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr15	42550349	A	C	0.00120	TMEM87A	-	FALSE
chr1	53708528	T	C	0.00057	LRP8	-	FALSE	(TA)n	SINE,Alu
chr1	6694980	G	A	0.00240	THAP3,DNAJC11	+,-	FALSE
chr8	143413136	C	T	0.00267	TSNARE1	-	FALSE
chr1	179326847	A	G	0.00021	SOAT1	+	TRUE	AluJo	SINE,Alu
chr7	158719106	G	A	0.00048	WDR60	+	FALSE
chr1	145369556	A	G	0.00373	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	19198414	G	A	0.00028	ALDH4A1	-	FALSE
chr3	156259288	T	C	0.00072	SSR3	-	TRUE	AluSq2	SINE,Alu
chr2	109401259	C	T	0.00889	RANBP2	+	FALSE
chr8	99053985	T	G	4.76792E-05	RPL30	-	FALSE
chr1	214524531	T	C	0.00753	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	145290818	C	G	0.00931	NBPF20	+	FALSE
chr1	67874540	T	C	0.00555	SERBP1	-	FALSE
chr7	44047381	G	A	0.00912	POLR2J4,SPDYE1	+,-	FALSE
chr1	41487492	C	G	0.00221	SLFNL1-AS1	+	FALSE
chr1	1662547	T	C	0.00556	SLC35E2	-	TRUE	AluY	SINE,Alu
chr12	133298938	A	G	0.00034	PGAM5	+	TRUE	AluSg	SINE,Alu
chr6	13790931	T	C	0.00948	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr6	43747963	G	C	0.00274	VEGFA	+	FALSE
chr8	56985612	G	T	0.00028	RPS20	-	FALSE
chr1	28598287	C	T	0.00188	SESN2	+	FALSE
chr3	172115465	T	A	0.00170	FNDC3B	+	FALSE
chr1	6283448	T	C	0.00827	ICMT	-	TRUE	AluSx3	SINE,Alu
chr2	55516891	G	A	2.12747E-05	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr14	53109810	T	C	0.00463	ERO1A	-	TRUE	MER53	SINE,Alu
chr2	37331119	T	C	0.00758		.	FALSE	AluSx1	SINE,Alu
chr1	16957414	C	T	0.00116		.	FALSE
chr6	24780892	A	C	0.00246	GMNN	+	FALSE
chr1	120612194	C	G	0.00091	NOTCH2	-	FALSE	(CCG)n	SINE,Alu
chr1	146650289	C	T	0.00024	PDIA3P1	+	FALSE
chr12	54634283	T	C	0.00047	CBX5	-	TRUE	AluJr	SINE,Alu
chr5	179382563	T	C	0.00704	RNF130	-	FALSE
chr17	4929004	A	G	0.00030	KIF1C	+	TRUE	AluY	SINE,Alu
chr1	200941185	T	G	0.00729	KIF21B	-	FALSE
chr1	92862804	A	G	0.00043		.	FALSE	AluJr	SINE,Alu
chr1	55319888	T	G	0.00000	DHCR24	-	FALSE
chr1	149913733	T	C	0.00143	OTUD7B	-	TRUE	MER96B	SINE,Alu
chr1	117945040	G	A	0.00181	MAN1A2	+	FALSE
chr1	9643873	A	G	0.00064		.	FALSE	AluY	SINE,Alu
chr1	9643155	A	G	0.00015		.	FALSE	AluSx	SINE,Alu

RBP	QKI
Knock-Method	shRNA
RBP Family	KH_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR256PLH
Platform	HiSeq
Pubmed ID	32252787

QKI - Target Gene Network