RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr5	154194457	A	C	0.00466	LARP1	+	FALSE
chr1	33960062	A	G	0.00064	ZSCAN20	+	FALSE
chr6	27425185	C	A	0.00577	ZNF184	-	FALSE
chr9	19376246	A	T	0.00298		.	FALSE
chr1	108113839	T	C	1.78857E-05	VAV3	-	FALSE
chr1	26608009	T	A	0.00496	SH3BGRL3	+	FALSE
chr1	15993514	C	T	0.00802		.	FALSE	AluSx4	SINE,Alu
chr5	68426312	G	A	0.00344	SLC30A5	+	FALSE
chr1	28826150	A	G	0.00152	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr2	24227357	A	G	0.00295		.	FALSE	AluSc	SINE,Alu
chr1	31905886	C	A	0.00702	SERINC2	+	FALSE
chr3	57913810	G	A	0.00477	SLMAP	+	FALSE
chr10	88951001	G	A	0.00033	FAM35A	+	FALSE
chr12	121769840	T	C	0.00499	ANAPC5	-	TRUE	AluJr	SINE,Alu
chr5	180682612	A	T	0.00235	CTC-338M12.4	+	FALSE
chr1	155142927	A	G	0.00877	KRTCAP2	-	FALSE
chr2	99772813	A	G	1.48642E-06	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr1	148252785	T	C	0.00314	NBPF8,NBPF14,NBPF9	-	FALSE
chr1	193058937	C	T	0.00652	TROVE2	+	FALSE	AluSc	SINE,Alu
chr2	118854108	A	T	0.00568	INSIG2	+	FALSE
chr1	117531621	A	G	0.00577	PTGFRN	+	FALSE
chr1	10519888	T	C	0.00666		.	FALSE	AluJr	SINE,Alu
chr10	15120279	T	C	0.00255	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr2	37327669	T	C	0.00566		.	FALSE
chr5	141691248	C	T	0.00360	SPRY4	-	FALSE
chr1	16929327	C	T	0.00315	NBPF1	-	FALSE	ERVL-E-int	SINE,Alu
chr2	207146631	C	A	9.52905E-05	ZDBF2	+	FALSE
chr3	98518155	A	T	0.00777	DCBLD2	-	FALSE
chr1	85786957	T	G	0.00959	DDAH1	-	FALSE
chr1	145511998	A	G	0.00715	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	79109352	T	G	0.00818	IFI44L	+	FALSE	LTR26	SINE,Alu
chr4	73922978	T	C	0.00079	COX18	-	TRUE	AluSz	SINE,Alu
chr2	11053740	C	T	0.00402	KCNF1	+	FALSE
chr1	31732603	A	C	0.00148	SNRNP40	-	FALSE
chr1	35649804	C	A	0.00127	SFPQ	-	FALSE
chr3	15114759	G	A	1.99109E-05	RBSN	-	FALSE
chr4	10076658	T	C	6.66134E-16	WDR1	-	FALSE
chr1	15993013	G	A	1.61862E-10		.	FALSE
chr4	128756737	A	G	8.66859E-06		.	FALSE	AluSx	SINE,Alu
chr22	36677546	T	G	0.00197	MYH9	-	FALSE
chr9	9442082	T	G	0.00052	PTPRD	-	FALSE	7SLRNA	SINE,Alu
chr1	19542401	T	C	0.00052	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chrX	9686187	T	C	0.00420	TBL1X	+	FALSE
chr1	21545088	T	C	0.00737	ECE1	-	FALSE	AluSx1	SINE,Alu
chr2	99812414	A	G	9.82924E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr5	121362874	A	G	0.00607	SRFBP1	+	TRUE	FRAM	SINE,Alu
chr8	94744813	C	T	5.22032E-05	RBM12B	-	FALSE
chr15	41593268	A	G	0.00084		.	FALSE	AluSz6	SINE,Alu
chr2	44115183	T	A	0.00914	LRPPRC	-	FALSE
chr5	37290435	T	C	8.22232E-07		.	FALSE	AluSz	SINE,Alu
chr5	130537933	A	G	0.00084	LYRM7	+	TRUE	AluSp	SINE,Alu
chr7	6501829	T	A	0.00081	KDELR2	-	FALSE
chr1	220231263	T	C	0.00300	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	142805281	C	T	0.00242		.	FALSE
chr2	191745653	T	G	0.00030	GLS	+	FALSE
chr16	23582262	T	G	0.00101	UBFD1	+	FALSE
chr8	95805071	A	G	1.12730E-06	DPY19L4	+	TRUE	AluYf1	SINE,Alu
chr3	88104159	A	C	0.00279	CGGBP1	-	FALSE
chr2	37429626	A	G	0.00028	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr2	155555207	A	C	0.00073	KCNJ3	+	FALSE
chr9	100777799	G	A	0.00675	ANP32B	+	FALSE
chr7	26708303	G	T	0.00095	SKAP2	-	FALSE	AluSx3	SINE,Alu
chr12	133298938	A	G	0.00034	PGAM5	+	TRUE	AluSg	SINE,Alu
chr5	134236287	A	G	0.00538	TXNDC15	+	TRUE	AluSq	SINE,Alu
chr2	46524711	C	T	0.00513	EPAS1	+	FALSE
chr5	122359499	C	A	0.00277	PPIC	-	FALSE	(AC)n	SINE,Alu
chr12	124146077	A	G	1.08379E-05	GTF2H3	+	TRUE	AluSx4	SINE,Alu
chr1	26774224	A	G	0.00349	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr4	7761286	T	C	8.48634E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	19543349	T	C	2.12419E-08	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr8	11701490	T	C	2.07071E-11	CTSB	-	TRUE	AluSx1	SINE,Alu
chr1	28825337	A	G	0.00099	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr3	86994021	T	C	0.00705	VGLL3	-	FALSE
chr2	129023282	G	C	0.00170	HS6ST1	-	FALSE
chr1	212277584	G	C	0.00997	DTL	+	FALSE
chr2	61277776	A	G	0.00178	PEX13	+	TRUE	AluY	SINE,Alu
chr1	160967857	T	C	0.00032	F11R	-	TRUE	AluSp	SINE,Alu
chr1	1594940	T	C	0.00115	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	33147928	A	G	9.58446E-05	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr1	63881552	C	T	0.00021	ALG6	+	FALSE
chr1	53289790	C	T	0.00281	ZYG11B	+	FALSE	AluSz	SINE,Alu
chr7	96318078	A	T	0.00790		.	FALSE
chr1	9162348	T	C	0.00359		.	FALSE	AluSx	SINE,Alu
chr1	52498139	A	G	0.00193	TXNDC12,KTI12	-	FALSE
chr3	196670099	A	C	6.06146E-06	NCBP2-AS2	+	FALSE
chr10	102308801	G	C	0.00127	HIF1AN	+	FALSE	(GT)n	SINE,Alu
chr1	211918115	C	T	7.42155E-06	LPGAT1	-	FALSE	MER63D	SINE,Alu
chr2	24227417	A	G	0.00831		.	FALSE	AluSc	SINE,Alu
chr3	10193358	A	G	0.00765	VHL	+	TRUE	L1ME4a	SINE,Alu
chr5	149364145	A	G	0.00383	SLC26A2	+	TRUE	AluSc8	SINE,Alu
chr6	29910586	G	A	1.69263E-05		.	FALSE
chr1	160966434	T	C	4.88498E-15	F11R	-	TRUE	AluSg	SINE,Alu
chr1	32631809	C	T	1.50957E-07	KPNA6	+	FALSE
chr12	96661613	A	G	0.00183	ELK3	+	FALSE
chr1	33147722	G	A	1.17176E-11	SYNC,RBBP4	+,-	FALSE
chr2	37329300	T	C	0.00925		.	FALSE	AluJr4	SINE,Alu
chr12	46577921	G	T	0.00306	SLC38A1	-	FALSE
chr16	11931210	G	T	0.00292	RSL1D1	-	FALSE
chr2	37334139	T	C	0.00146	EIF2AK2	-	TRUE	AluSz	SINE,Alu
chr6	42855182	A	G	0.00583	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	144604425	C	T	0.00299	NBPF20	+	FALSE
chr15	41591417	A	G	2.88542E-07	OIP5-AS1	+	TRUE	AluSx	SINE,Alu
chr3	8922054	T	C	0.00300	RAD18	-	FALSE
chr10	126677250	G	T	0.00762	CTBP2	-	FALSE
chr7	74169234	G	T	8.95897E-05	GTF2I	+	FALSE
chr1	1595388	A	G	0.00135	CDK11B,SLC35E2B	-	FALSE	AluJr	SINE,Alu
chr1	28564252	A	G	0.00986	ATPIF1	+	FALSE
chr3	88199298	T	C	0.00112	C3orf38	+	FALSE
chr1	33148698	A	G	0.00736	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr2	9629953	C	A	0.00105	ADAM17	-	FALSE
chr1	39305002	A	T	0.00089	RRAGC	-	FALSE
chr1	1594196	T	C	0.00097	CDK11B,SLC35E2B	-	FALSE
chr17	31258352	G	A	0.00417	TMEM98	+	FALSE
chr1	45242978	A	G	0.00604	RPS8	+	TRUE	AluSz	SINE,Alu
chr1	67451521	A	T	0.00049	MIER1	+	FALSE
chr3	141012493	C	A	0.00249	PXYLP1	+	FALSE	MER58A	SINE,Alu
chr1	151374016	A	G	0.00822	PSMB4	+	FALSE
chr1	33086754	T	C	0.00065		.	FALSE	AluY	SINE,Alu
chr4	165998654	T	C	0.00953	TMEM192	-	TRUE	AluSg	SINE,Alu
chr1	26755494	A	G	0.00874	LIN28A	+	TRUE	AluSc	SINE,Alu
chr6	150047430	T	C	0.00568	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	54571380	A	G	0.00332	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr6	34252328	T	A	0.00062		.	FALSE	(T)n	SINE,Alu
chr3	10192633	A	G	8.20807E-06	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	206566195	C	T	0.00052	SRGAP2	+	FALSE
chr1	241792562	A	G	0.00800	OPN3,CHML	-	FALSE
chr1	46159809	T	A	0.00605	TMEM69	+	FALSE
chr1	10520174	T	C	0.00158		.	FALSE	AluSx	SINE,Alu
chr1	17199303	G	A	0.00062	LOC440570	+	FALSE
chr4	129795661	A	T	0.00165	JADE1	+	FALSE
chr4	17803616	T	C	0.00046	DCAF16	-	TRUE	AluY	SINE,Alu
chrX	73421652	T	C	0.00436	FTX	-	TRUE	L1MB7	SINE,Alu
chr2	217366897	A	G	0.00440		.	FALSE	AluSz6	SINE,Alu
chr6	26368938	C	T	0.00121	BTN3A2	+	FALSE
chr9	125609943	A	G	0.00247		.	FALSE
chr1	53288916	A	G	0.00289	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr2	191745647	C	T	2.95764E-05	GLS	+	FALSE
chr1	10519912	T	C	0.00750		.	FALSE	AluJr	SINE,Alu
chr3	189712010	G	A	1.42873E-07	P3H2	-	FALSE
chr1	23636452	A	G	0.00294	HNRNPR	-	FALSE
chr1	6314743	C	T	0.00615	GPR153	-	FALSE
chr1	66058513	A	G	0.00091	LEPR	+	FALSE
chr3	73115786	T	C	3.88619E-05	PPP4R2	+	FALSE
chr1	31344628	T	A	0.00085	SDC3	-	FALSE
chr7	144060286	A	G	0.00674	ARHGEF5	+	FALSE
chr3	42592138	G	A	0.00056	SEC22C	-	FALSE
chr1	97543764	C	T	0.00353	DPYD	-	FALSE
chr7	102090451	A	G	0.00360	ORAI2	+	TRUE	AluSz	SINE,Alu
chr4	170643973	C	T	0.00232	CLCN3	+	FALSE
chr8	144827206	A	T	0.00196	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr1	145281656	A	T	0.00202	NBPF20,NOTCH2NL	+	FALSE
chr4	17803026	T	C	0.00396	DCAF16	-	TRUE	AluSz	SINE,Alu
chr1	21808159	G	A	0.00011	NBPF3	+	FALSE
chr1	6282420	T	C	0.00133	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	27992799	T	A	0.00017	IFI6	-	FALSE	FAM	SINE,Alu
chr16	69338754	T	C	0.00210	SNTB2	+	FALSE	AluJr	SINE,Alu
chr2	204055625	G	A	0.00426	NBEAL1	+	FALSE
chr2	55516911	A	G	0.00719	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr3	42591956	G	A	0.00503	SEC22C	-	FALSE
chr1	145689566	A	G	2.12475E-08	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr2	128950548	A	G	0.00589	UGGT1	+	TRUE	AluSc	SINE,Alu
chr1	38275802	T	C	2.04657E-06	MTF1	-	FALSE
chr1	9642832	C	A	0.00082		.	FALSE
chr3	148748197	T	A	0.00026	HLTF	-	FALSE
chr2	96918126	G	T	0.00821	TMEM127	-	FALSE
chr6	32121594	T	C	0.00104		.	FALSE
chr10	96090672	A	G	0.00018		.	FALSE
chr3	172117459	C	A	0.00791	FNDC3B	+	FALSE
chr1	161338504	C	G	0.00343		.	FALSE
chr1	86118417	T	G	0.00211	ZNHIT6	-	FALSE
chr2	218696215	A	G	0.00915	TNS1	-	FALSE
chr1	42886523	T	C	0.00649	RIMKLA	+	FALSE	MIRc	SINE,Alu
chr1	27202960	T	C	0.00213		.	FALSE	AluSq2	SINE,Alu
chrX	77083538	T	C	0.00055	MAGT1	-	TRUE	AluSz6	SINE,Alu
chrX	77083007	T	C	0.00371	MAGT1	-	TRUE	AluSg	SINE,Alu
chr1	10519951	T	C	0.00499		.	FALSE	AluJr	SINE,Alu
chr1	35648710	G	C	0.00377	SFPQ	-	FALSE
chr5	130537761	A	G	0.00947	LYRM7	+	FALSE	AluJb	SINE,Alu
chr20	3905907	A	G	0.00325	PANK2	+	TRUE	AluSx	SINE,Alu
chr10	75009585	T	C	2.45347E-10	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	95658342	A	T	0.00123	TMEM56-RWDD3,LOC101928118,TMEM56	+,-	FALSE
chr3	45636213	C	G	0.00240		.	FALSE
chr1	179325847	A	G	7.26692E-05	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	23636278	A	T	0.00442	HNRNPR	-	FALSE
chr1	36067752	T	C	0.00123	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	197001673	T	C	0.00043	STK17B	-	FALSE
chr1	32669918	G	A	0.00639	CCDC28B	+	FALSE
chr15	90375419	T	C	0.00521	C15orf38-AP3S2,AP3S2	-	TRUE	AluJr	SINE,Alu
chr17	45761109	T	G	0.00018		.	FALSE
chr1	6583457	T	C	0.00075	NOL9	-	TRUE	AluSq	SINE,Alu
chr6	17557416	G	T	0.00885	CAP2	+	FALSE
chr2	217366541	A	G	0.00071		.	FALSE	AluSz	SINE,Alu
chr1	1570928	G	T	0.00173	CDK11B	-	FALSE
chr1	32799437	C	T	0.00318	MARCKSL1	-	FALSE
chr1	10519064	T	C	0.00012		.	FALSE	AluSx3	SINE,Alu
chr1	197093361	G	A	8.55632E-06	ASPM	-	FALSE
chr1	154323558	A	T	0.00011	ATP8B2	+	FALSE
chr4	1205680	C	A	0.00247	CTBP1-AS,CTBP1	+,-	FALSE
chr7	152342999	T	C	0.00313		.	FALSE	FRAM	SINE,Alu
chr1	10520072	T	C	0.00115		.	FALSE	AluSx	SINE,Alu
chr1	230979247	G	A	0.00137	C1orf198	-	FALSE
chr2	121749583	T	C	0.00120	GLI2	+	FALSE
chr10	98281496	T	C	0.00509	TM9SF3	-	FALSE
chr1	28825418	A	G	0.00525	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr11	65065251	A	G	0.00580	POLA2	+	TRUE	AluY	SINE,Alu
chr6	42855256	A	G	0.00572	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr3	189675270	T	G	0.00039	P3H2	-	FALSE
chr1	6162583	G	A	0.00281	CHD5	-	FALSE
chr1	153533586	T	C	0.00358	S100A2	-	FALSE	Charlie18a	SINE,Alu
chr15	63445744	A	T	0.00539	RPS27L	-	FALSE
chr1	27338911	C	T	0.00455	FAM46B	-	FALSE
chr4	56295160	T	A	0.00576	CLOCK	-	FALSE	(T)n	SINE,Alu
chr1	16889642	T	C	6.70250E-05	NBPF1	-	TRUE
chr1	21940555	C	T	0.00907	RAP1GAP	-	FALSE
chr2	128949255	A	G	0.00063	UGGT1	+	TRUE	AluSg	SINE,Alu
chr9	131872857	C	G	0.00151	CRAT	-	FALSE
chrX	84532996	T	G	0.00801	POF1B	-	FALSE
chr1	46076529	A	G	0.00196	NASP	+	TRUE	AluSx	SINE,Alu
chr1	29446554	C	A	0.00682	EPB41,TMEM200B	+,-	FALSE
chr1	180082702	G	C	0.00019	CEP350	+	FALSE
chr1	46076543	A	G	0.00989	NASP	+	TRUE	AluSx	SINE,Alu
chr1	36068275	T	C	0.00098	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	64081236	T	C	8.95068E-05	PRICKLE2,PRICKLE2-AS1	+,-	FALSE
chr6	7289958	C	G	0.00893	SSR1	-	FALSE
chr10	101992793	T	C	0.00407	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr1	45280109	A	G	0.00591		.	FALSE	AluYk3	SINE,Alu
chr4	17802783	T	C	0.00509	DCAF16	-	TRUE	AluSz	SINE,Alu
chr15	85184841	T	C	0.00016	WDR73,SCAND2P	+,-	FALSE	AluSz	SINE,Alu
chr1	46164493	T	C	0.00977	IPP	-	TRUE	AluJb	SINE,Alu
chr4	57796757	G	A	0.00011	REST	+	FALSE
chr1	229652587	T	C	0.00732	ABCB10	-	FALSE
chr22	37962318	T	C	0.00884	CDC42EP1	+	FALSE
chr1	120539711	G	T	0.00627	NOTCH2	-	FALSE
chr2	216903620	T	C	0.00623	PECR	-	TRUE	AluSx3	SINE,Alu
chr7	22984967	A	G	0.00108	FAM126A	-	FALSE
chr3	100083426	C	T	0.00908	TOMM70	-	FALSE	FAM	SINE,Alu
chr1	94351063	A	T	0.00188	GCLM	-	FALSE
chr1	36067784	T	C	0.00821	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	168220427	A	G	0.00670		.	FALSE	AluSz6	SINE,Alu
chr17	4856580	T	C	0.00922	ENO3	+	FALSE
chr1	92862896	A	G	6.86172E-05		.	FALSE	AluJr	SINE,Alu
chr2	38971059	A	C	0.00539	SRSF7	-	FALSE
chr1	26143725	A	T	0.00291	SEPN1	+	FALSE	AluSx	SINE,Alu
chr6	122765962	T	A	0.00362	SERINC1	-	FALSE
chr2	204298783	A	C	0.00179	RAPH1	-	FALSE	(AT)n	SINE,Alu
chr4	2940026	T	C	0.00046	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr4	88060832	T	C	0.00531	AFF1	+	FALSE
chr1	179326278	A	G	0.00379	SOAT1	+	TRUE
chr1	227211026	C	G	0.00373	CDC42BPA	-	FALSE
chr10	22824828	A	T	0.00225	PIP4K2A	-	FALSE
chr1	179326882	A	G	0.00020	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	6583036	T	C	0.00296	NOL9	-	TRUE	AluSx4	SINE,Alu
chr1	36067838	T	C	0.00348	PSMB2	-	TRUE	AluSz	SINE,Alu
chr3	48787640	T	C	0.00320	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	36067886	T	C	1.98907E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	110604747	G	A	0.00739	ALX3	-	FALSE
chr2	206987635	T	C	0.00930		.	FALSE	AluJb	SINE,Alu
chr6	134492481	A	C	0.00340	SGK1	-	FALSE
chr1	46164678	T	C	0.00773	IPP	-	TRUE	AluJb	SINE,Alu
chr5	56177846	G	C	0.00952	MAP3K1	+	FALSE
chr1	19953124	G	A	0.00106	MINOS1,MINOS1-NBL1	+	FALSE
chr2	10050947	T	C	0.00273	TAF1B	+	FALSE
chr1	93299394	A	G	0.00655	FAM69A,RPL5	+,-	FALSE
chr1	931935	T	C	0.00796		.	FALSE
chr12	133298095	A	G	0.00081	PGAM5	+	TRUE	AluJo	SINE,Alu
chr2	71214819	A	T	0.00346	TEX261	-	FALSE
chr5	64016339	C	T	6.96791E-06	SREK1IP1	-	FALSE
chr1	6582689	T	C	4.44823E-05	NOL9	-	TRUE	AluSg	SINE,Alu

RBP	KRR1
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR244SIO
Platform	HiSeq
Pubmed ID	32252787

KRR1 - Target Gene Network