RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	55541174	A	G	0.00038	USP24	-	FALSE
chr3	44791454	A	T	3.12862E-05	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr2	206986945	T	C	0.00414		.	FALSE	AluJr	SINE,Alu
chr7	30536611	T	C	0.00421	GGCT	-	FALSE
chr1	11347150	C	A	0.00380	UBIAD1	+	FALSE
chr3	10193796	A	G	2.82806E-06	VHL	+	TRUE	AluSx	SINE,Alu
chr2	37328082	T	C	0.00243		.	FALSE
chr10	79800437	T	A	0.00445	RPS24	+	FALSE
chr1	201488170	A	G	0.00997		.	FALSE	AluSz	SINE,Alu
chr9	132573290	C	T	0.00881	TOR1B	+	FALSE
chr1	94335335	G	T	0.00425	DNTTIP2	-	FALSE
chr1	145273431	A	G	7.55666E-05	NBPF20,NOTCH2NL	+	FALSE
chr7	100064719	A	G	0.00276	TSC22D4	-	FALSE
chr1	33148210	A	G	0.00778	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	150783968	T	A	0.00368	ARNT	-	FALSE
chr1	53712727	C	T	0.00313	LRP8	-	FALSE
chr1	53289892	A	G	0.00070	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr6	31506635	T	G	6.78064E-05		.	FALSE
chr19	21907988	C	T	0.00295	ZNF100	-	FALSE
chr12	125511312	A	G	0.00638	THRIL	-	FALSE	AluSx1	SINE,Alu
chr4	177252326	A	G	0.00554	SPCS3	+	TRUE
chr5	41917697	A	T	0.00051	C5orf51	+	FALSE
chr2	37328097	T	C	0.00018		.	FALSE
chr1	27874481	C	A	0.00046	AHDC1	-	FALSE
chr19	11257673	T	C	0.00155	SPC24	-	TRUE	AluSp	SINE,Alu
chr1	145369556	A	G	0.00373	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	205686523	G	T	0.00640	NUCKS1	-	FALSE
chr7	26708303	G	T	0.00095	SKAP2	-	FALSE	AluSx3	SINE,Alu
chr4	141600320	A	G	0.00179	TBC1D9	-	FALSE
chr2	206983267	T	C	0.00133		.	FALSE	AluJb	SINE,Alu
chr7	152345392	T	C	0.00643	XRCC2	-	TRUE	AluSx1	SINE,Alu
chr8	95805070	A	G	0.00721	DPY19L4	+	TRUE	AluYf1	SINE,Alu
chr12	69237013	A	G	0.00659	MDM2	+	TRUE
chr5	179720333	A	G	0.00308		.	FALSE
chr2	191799592	A	G	0.00021	GLS	+	TRUE
chr1	45976722	G	T	0.00292	MMACHC,PRDX1	+,-	FALSE
chr16	10624953	T	C	0.00056	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	36067833	T	C	3.75622E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	145511991	A	G	0.00673	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	10520487	T	C	0.00710		.	FALSE	AluSx1	SINE,Alu
chr1	26143725	A	T	0.00920	SEPN1	+	FALSE	AluSx	SINE,Alu
chr9	115447533	T	C	0.00326	INIP	-	TRUE	AluJb	SINE,Alu
chr7	2650926	G	A	0.00306	IQCE	+	FALSE
chr1	2520435	G	C	0.00041	FAM213B	+	FALSE
chr1	36068231	T	C	0.00582	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	36068364	T	C	9.25575E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	19586532	A	G	0.00166	MRTO4	+	TRUE	AluSz	SINE,Alu
chr17	28963296	A	G	0.00572	LOC107133515	+	TRUE	AluJr4	SINE,Alu
chr5	52389817	T	A	0.00868	ITGA2	+	FALSE
chr3	98516118	T	A	0.00541	DCBLD2	-	FALSE
chr1	53288870	A	G	0.00501	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr1	10518845	T	C	0.00882		.	FALSE	AluSx1	SINE,Alu
chr4	2940026	T	C	0.00046	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr5	79923360	T	C	0.00727	DHFR	-	TRUE	AluJr	SINE,Alu
chr1	156011444	T	C	0.00483	UBQLN4	-	FALSE
chr6	42855200	A	G	2.13337E-05	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	1597403	C	T	0.00912	CDK11B,SLC35E2B	-	FALSE
chr1	36068369	T	C	0.00207	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	3546128	A	G	0.00213	TPRG1L	+	FALSE	AluSz	SINE,Alu
chr9	131071533	T	C	0.00168	TRUB2	-	TRUE	FAM	SINE,Alu
chr1	148752615	C	A	0.00042		.	FALSE
chr17	57279282	A	G	7.34157E-06	PRR11	+	TRUE	AluSq2	SINE,Alu
chr16	10624996	T	C	0.00059	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	173834225	T	C	0.00105	GAS5	-	FALSE	AluSz	SINE,Alu
chr3	27674782	A	G	0.00630		.	FALSE
chr1	24999101	G	T	0.00100	SRRM1	+	FALSE
chr1	1255412	C	A	0.00751	CPSF3L	-	FALSE	(GCAGG)n	SINE,Alu
chr1	144917841	T	C	4.47769E-05	NBPF20,PDE4DIP	+,-	FALSE
chr2	128060859	T	A	0.00016	MAP3K2	-	FALSE
chr3	142772593	G	A	0.00135	U2SURP	+	FALSE
chr5	10265488	A	G	0.00120	CCT5	+	FALSE
chr2	152334055	A	G	0.00064		.	FALSE	AluY	SINE,Alu
chr1	9643155	A	G	0.00015		.	FALSE	AluSx	SINE,Alu
chr1	224927968	G	A	0.00695	CNIH3	+	FALSE
chr17	73886219	T	C	8.52474E-05	TRIM65	-	TRUE	FRAM	SINE,Alu
chr1	179326847	A	G	0.00512	SOAT1	+	TRUE	AluJo	SINE,Alu
chr1	53291425	A	G	0.00517	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	142688506	T	C	4.54862E-05		.	FALSE
chr1	38423183	C	T	0.00210	SF3A3	-	FALSE	AluJo	SINE,Alu
chr7	91742141	T	A	0.00620	CYP51A1	-	FALSE	AluSx3	SINE,Alu
chr4	3242100	G	A	0.00916	HTT	+	FALSE
chr1	157094053	G	A	0.00740		.	FALSE	A-rich	SINE,Alu
chr1	23636275	G	T	0.00258	HNRNPR	-	FALSE
chr7	17384437	A	G	0.00192	AHR	+	TRUE	AluSx	SINE,Alu
chr4	57326960	A	G	2.00220E-09	PAICS	+	TRUE	AluSx1	SINE,Alu
chr2	99812398	A	G	0.00019	MRPL30	+	TRUE	AluSx	SINE,Alu
chr8	30536450	T	C	8.74573E-07	GSR	-	TRUE	AluSp	SINE,Alu
chr16	80636297	C	G	0.00161	CDYL2	-	FALSE
chr7	12250939	G	A	0.00537	TMEM106B	+	FALSE
chr1	33149363	A	G	0.00368	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	16890484	G	C	0.00704	NBPF1	-	FALSE
chr2	181737842	C	T	0.00350	SCHLAP1	+	FALSE
chr12	133298095	A	G	0.00081	PGAM5	+	TRUE	AluJo	SINE,Alu
chrX	3526616	G	A	0.00971	PRKX	-	FALSE
chr5	178986978	C	G	0.00341	RUFY1	+	FALSE
chr1	25570562	T	A	0.00028	RSRP1	-	FALSE	Alu	SINE,Alu
chr1	66838733	A	C	0.00086	PDE4B	+	FALSE
chr1	40982042	G	A	0.00330	EXO5	+	FALSE	AluSx	SINE,Alu
chr17	41144251	T	G	0.00014	RUNDC1	+	FALSE
chr1	24301900	G	A	2.65815E-05		.	FALSE
chr1	144931581	C	G	0.00292	NBPF20,PDE4DIP	+,-	FALSE
chr1	50883798	T	C	0.00156	DMRTA2	-	FALSE
chr21	33032035	T	A	1.90109E-05	SOD1	+	FALSE
chr12	98942808	A	G	0.00019	TMPO	+	TRUE	AluSc	SINE,Alu
chr1	16200163	A	G	0.00078	SPEN	+	FALSE
chr5	72801323	C	A	0.00240	BTF3	+	FALSE
chr1	22929376	A	G	0.00378	EPHA8	+	FALSE
chr1	16722111	C	T	0.00453	SZRD1	+	FALSE	(TTTT)n	SINE,Alu
chr2	219100706	A	G	0.00874	ARPC2	+	TRUE	AluSx1	SINE,Alu
chr1	46077218	A	G	0.00543	NASP	+	TRUE	AluSc8	SINE,Alu
chr1	1607574	C	T	0.00187	CDK11B,SLC35E2B	-	FALSE
chr15	42550445	T	C	0.00360	TMEM87A	-	FALSE
chr1	145688961	A	G	0.00324	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chrX	77083939	T	C	5.71267E-05	MAGT1	-	TRUE	AluSz	SINE,Alu
chr5	149363214	A	G	6.58903E-07	SLC26A2	+	TRUE	AluJr	SINE,Alu
chr2	207146631	C	A	9.52905E-05	ZDBF2	+	FALSE
chr1	93827995	C	T	0.00714	DR1	+	FALSE
chr1	179012947	C	G	0.00501	FAM20B	+	FALSE
chr1	46075661	A	G	0.00071	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	53291382	A	G	0.00114	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	183155546	G	A	0.00103	LAMC2	+	FALSE
chr1	10517653	T	C	0.00038		.	FALSE	AluSx1	SINE,Alu
chr7	128143932	A	G	0.00332		.	FALSE	AluSq2	SINE,Alu
chr1	145689533	A	G	0.00618	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	168213413	T	C	0.00733		.	FALSE	AluSx1	SINE,Alu
chr1	144594170	C	T	0.00636	NBPF20	+	FALSE
chr17	25974348	C	T	0.00160	LGALS9	+	FALSE
chr1	53291425	A	G	2.55913E-05	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr20	25428750	A	G	3.17139E-06	GINS1	+	TRUE	AluJb	SINE,Alu
chr17	7257878	A	G	0.00027	KCTD11	+	FALSE
chr1	10437811	A	G	0.00800	KIF1B	+	TRUE	AluSg	SINE,Alu
chr3	181430146	C	A	0.00256	SOX2-OT,SOX2	+	FALSE
chr20	45839074	A	T	0.00019	ZMYND8	-	FALSE	(T)n	SINE,Alu
chr1	204095687	C	A	5.97770E-05	SOX13	+	FALSE
chr3	109045430	G	A	4.43689E-05	DPPA4	-	FALSE
chr7	44618448	A	G	0.00962	TMED4	-	FALSE	AluSq2	SINE,Alu
chr1	17345246	A	T	0.00812	SDHB	-	FALSE
chr2	232576431	T	C	0.00593	PTMA	+	FALSE
chr3	15114399	T	C	0.00848	RBSN	-	TRUE	AluY	SINE,Alu
chr1	9642832	C	A	0.00082		.	FALSE
chr9	136209399	A	T	0.00011	MED22	-	FALSE
chr6	42981526	C	G	0.00129	MEA1	-	FALSE
chr2	70131964	A	C	0.00351	SNRNP27	+	FALSE	L1ME4a	SINE,Alu
chr1	61922437	G	T	0.00359	NFIA	+	FALSE
chr2	10923581	C	T	0.00593	ATP6V1C2,PDIA6	+,-	FALSE
chr4	10447986	T	A	0.00077	ZNF518B	-	FALSE
chr1	52306082	A	T	0.00038	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr1	16909161	T	C	0.00718	NBPF1	-	FALSE
chr5	37291636	T	C	0.00518		.	FALSE	AluSx3	SINE,Alu
chr2	191556842	T	A	0.00812	NAB1	+	FALSE
chr1	220231461	T	C	0.00050	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	100490275	A	G	0.00142	SLC35A3	+	TRUE	AluSc5	SINE,Alu
chr5	14397238	T	C	0.00552	TRIO	+	FALSE
chr1	19934793	G	A	0.00068	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr4	57326873	A	G	0.00034	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	100440563	A	G	0.00732	SLC35A3	+	FALSE	AluJb	SINE,Alu
chr11	19184951	G	A	0.00066	ZDHHC13	+	FALSE
chr6	42855962	A	G	0.00781	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	33148706	A	G	0.00050	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr4	9909923	G	A	0.00416	SLC2A9	-	FALSE
chr6	57034840	T	G	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr1	67874540	T	C	0.00555	SERBP1	-	FALSE
chr4	7761211	C	T	8.70555E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	9161011	T	C	3.85416E-05		.	FALSE	AluJb	SINE,Alu
chr1	15990929	C	A	0.00202		.	FALSE	AluSx3	SINE,Alu
chr5	68788642	G	C	3.71778E-05	OCLN	+	FALSE
chr1	145512024	A	G	0.00836	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	78414310	C	A	9.26299E-05	FUBP1	-	FALSE
chr7	20178567	T	C	1.15326E-05	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr3	19992312	A	G	0.00798	RAB5A	+	FALSE
chr1	3548832	G	C	0.00464	WRAP73	-	FALSE
chr1	44463185	T	G	0.00469	SLC6A9	-	FALSE
chr2	220370192	C	T	0.00055	GMPPA	+	FALSE
chr15	83826216	C	T	0.00278	HDGFRP3	-	FALSE	(CTT)n	SINE,Alu
chr17	29578724	C	T	0.00514	NF1	+	FALSE
chr1	16933658	G	A	0.00699	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr4	128756579	A	G	0.00501		.	FALSE	AluSx	SINE,Alu
chr1	86817074	G	T	9.65311E-06	ODF2L	-	FALSE	L1PA7	SINE,Alu
chr4	84525974	T	C	0.00255	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr1	9328120	A	G	1.75282E-05	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	55207982	C	A	0.00063	MROH7-TTC4,TTC4	+	FALSE
chr2	17836722	T	A	0.00816	VSNL1	+	FALSE
chr5	74669972	C	T	0.00711	COL4A3BP	-	FALSE
chr2	239355561	A	G	0.00343	ASB1	+	FALSE
chr1	53288862	A	G	0.00570	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr3	120115286	T	G	0.00077	FSTL1	-	FALSE
chr1	45244419	T	A	0.00027		.	FALSE
chr13	28240417	C	G	6.17934E-05	POLR1D	+	FALSE
chr2	204301752	G	C	0.00029	RAPH1	-	FALSE
chr5	37291504	T	C	0.00878		.	FALSE	AluSx3	SINE,Alu
chr3	12613866	T	C	0.00043	MKRN2	+	FALSE
chr1	16060892	C	T	0.00946	PLEKHM2	+	FALSE
chr22	18572597	A	G	0.00322	PEX26	+	TRUE	AluYf1	SINE,Alu
chr15	41590943	A	G	0.00561	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr16	87864349	C	A	0.00981	SLC7A5	-	FALSE
chr11	126147697	G	A	0.00237	FOXRED1	+	FALSE
chr1	146650363	T	A	0.00982	PDIA3P1	+	FALSE
chr1	1595527	T	C	0.00139	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr3	33430397	C	T	0.00171	UBP1	-	FALSE
chr1	52253793	C	T	0.00966	OSBPL9	+	FALSE
chr1	38463504	C	T	0.00068	FHL3	-	FALSE
chr5	40832555	A	T	5.95918E-06	RPL37	-	FALSE
chr6	31379931	G	A	0.00093		.	FALSE
chr1	144596446	A	G	0.00124	NBPF20	+	TRUE	AluJb	SINE,Alu
chr1	52498139	A	G	0.00193	TXNDC12,KTI12	-	FALSE
chr17	37005835	T	C	2.39380E-05		.	FALSE	AluSg	SINE,Alu
chr1	10520487	T	C	0.00638		.	FALSE	AluSx1	SINE,Alu
chr1	28825418	A	G	0.00046	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	214529170	T	C	0.00120	PTPN14	-	TRUE
chr1	65298626	T	A	0.00580	RAVER2	+	FALSE	X12_DNA	SINE,Alu
chr1	45244053	A	G	0.00562	RPS8	+	FALSE
chr1	179852074	T	C	0.00309	TOR1AIP1	+	FALSE
chr5	81571875	A	T	0.00027	RPS23	-	FALSE
chr5	290174	C	T	0.00083	PDCD6	+	FALSE
chr1	206566948	G	A	0.00228	SRGAP2	+	FALSE
chr4	177252327	A	G	2.51883E-09	SPCS3	+	TRUE
chr1	25894468	C	G	0.00357	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	115248084	C	T	0.00171	NRAS	-	FALSE
chr3	150262002	G	T	0.00016	SERP1	-	FALSE
chr1	33149400	A	G	0.00258	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr1	6651456	A	G	0.00614	KLHL21	-	FALSE
chr4	56237899	A	G	0.00503	SRD5A3,SRD5A3-AS1	+,-	FALSE	AluSx	SINE,Alu
chr1	23409538	G	A	0.00464	KDM1A	+	FALSE
chr1	3545194	C	G	0.00044	TPRG1L	+	FALSE
chr1	36067752	T	C	0.00402	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	1273359	T	G	0.00254	DVL1	-	FALSE
chr20	43954058	G	C	0.00876	SDC4	-	FALSE
chr5	180665123	G	A	0.00259	RACK1	-	FALSE
chr7	143003517	T	A	0.00251	CASP2	+	FALSE	AluY	SINE,Alu
chr1	1419130	A	G	0.00107	ATAD3B	+	FALSE	AluSz	SINE,Alu
chr1	10042988	A	G	3.32241E-06	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr9	89627066	A	G	0.00588	LOC440173	-	FALSE
chr1	100658578	G	A	0.00030	DBT	-	FALSE
chr19	33882222	G	A	0.00236	PEPD	-	FALSE
chr2	37430603	T	C	0.00483	CEBPZOS,CEBPZ	+,-	FALSE
chr1	142688597	C	T	0.00605		.	FALSE
chr3	44791343	T	C	0.00220	KIAA1143	-	FALSE	AluJr	SINE,Alu
chr1	204526631	A	G	0.00536	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	46830430	G	A	0.00023	NSUN4	+	FALSE	LTR108a_Mam	SINE,Alu
chr1	145293469	G	C	0.00578	NBPF20,NBPF10	+	FALSE
chr1	138266	C	T	0.00802	LOC729737	-	FALSE
chr1	23419855	T	C	0.00555	LUZP1	-	FALSE
chr2	219100202	C	T	0.00027	ARPC2	+	FALSE	AluJr	SINE,Alu
chr1	10517691	T	C	9.61087E-05		.	FALSE	AluSx1	SINE,Alu
chr1	10518797	T	C	0.00510		.	FALSE	AluSx1	SINE,Alu
chr19	45406536	G	T	0.00518	TOMM40	+	FALSE
chr1	28930023	G	A	0.00037	TAF12	-	FALSE
chr2	61386572	C	G	0.00821	C2orf74	+	FALSE	AluSz	SINE,Alu
chr7	300513	T	C	2.92808E-06	FAM20C	+	FALSE
chr7	17384880	A	G	0.00027	AHR	+	TRUE	AluSc	SINE,Alu
chr2	206981874	T	C	0.00060		.	FALSE	AluJb	SINE,Alu
chr1	16945570	A	G	0.00157	CROCCP2	-	FALSE
chr3	101369192	C	T	0.00014	ZBTB11	-	FALSE
chr3	10290512	A	G	0.00289	TATDN2	+	FALSE

RBP	RPS5
Knock-Method	shRNA
RBP Family	Ribosomal_S7
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR838SMC
Platform	HiSeq
Pubmed ID	32252787

RPS5 - Target Gene Network