Dataset Overview
RBPTFIP11
Knock-MethodshRNA
RBP FamilyG-patch
Biosample NameK562
Tissue TypeHaematopoietic_and_lymphoid_tissue
Biosample TypeCell line
# of Control2
# of Treat2
SpeciesHuman
Data SourceENCODE
Profile IDENCSR911DGK
PlatformHiSeq
Pubmed ID32252787

TFIP11 - Target Gene Network

up-regulated gene   
down-regulated gene   
Gene Type: # of Top Genes:

Differential Expression Genes responding to KD/KO of TFIP11
Gene Mean Expr. of Control Mean Expr. of KD/KO logFC PValue FDR

Function Analysis of Target Genes of TFIP11


Differential Alternative Splicing
  • Exon Skipping
  • Mutually Exclusive Exons
  • Alternative 5’ splice site
  • Alternative 3’ splice site
  • Intron Retention
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot
RBP LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE pValue △Inc Dataset ID Sashimi plot

Differential Variants in RNA (DVRs)
Chrom Site Ref_allele Alt_allele Pvalue Genename Strand KnownRNAediting RepeatName RepeatFamily
chr9108152702GA2.83018E-05SLC44A1+FALSE
chr1214531079AG0.00124PTPN14-FALSE
chr110519946TC0.00033.FALSEAluJrSINE,Alu
chr2134728146AG0.00070IFNAR1+TRUEAluScSINE,Alu
chr1373651653GT0.00532KLF5+FALSE
chr115899549TC0.00960AGMAT-TRUEAluSq2SINE,Alu
chr323962339TA0.00925RPL15+FALSE
chr42943361TC7.19955E-07NOP14-AS1,NOP14+,-FALSE
chr946687845GC0.00389FGF7P6,LOC554249,LOC102724238+,-FALSE
chr153291382AG0.00132ZYG11B+TRUEAluJrSINE,Alu
chr136067677TC0.00522PSMB2-TRUEAluSzSINE,Alu
chr5139931626TG0.00490SRA1-FALSE
chr1182356399AG0.00740GLUL-FALSE
chr116918717CT0.00550NBPF1-FALSE
chr186986259GA5.32960E-05LAMA1-FALSE
chr145280109AG0.00251.FALSEAluYk3SINE,Alu
chr2233257373GA0.00581SYN3,TIMP3+,-FALSE
chr128564612CA0.00714ATPIF1+FALSE
chr11344893AG0.00186.FALSEAluSgSINE,Alu
chr116203171CT3.13656E-06SPEN+FALSE
chr12323041TC0.00970MORN1-FALSE
chr167518534CT0.00682SLC35D1-FALSE
chr1179042580AG0.00995FAM20B+TRUEAluSx1SINE,Alu
chr1227071525CT0.00013PSEN2+FALSE
chr1206516261CT0.00020SRGAP2+FALSE
chr1063954812AC0.00641RTKN2-FALSE
chr124995941AG0.00382SRRM1+FALSE
chr1201438098TG2.75480E-05PHLDA3-FALSE
chr189518120AG0.00453GBP1-FALSE
chr16582558TC0.00030NOL9-TRUEAluSx1SINE,Alu
chr297494866CT0.00069CNNM3+FALSE
chr269548320CT7.68354E-05GFPT1-FALSE
chr1100489835AG0.00043SLC35A3+TRUEAluSgSINE,Alu
chr299812978AG0.00167MRPL30+TRUEAluJbSINE,Alu
chr970483778AT0.00026CBWD5-FALSE
chr246612340GT3.13955E-05EPAS1+FALSE
chr12125512173AG0.00285.FALSEAluSx1SINE,Alu
chr317200672CA0.00665TBC1D5-FALSE
chr3196079305TC0.00161.FALSEAluSxSINE,Alu
chr110519932TC0.00710.FALSEAluJrSINE,Alu
chr11447756GC0.00354ATAD3A+FALSE
chr18930561TG0.00913ENO1-FALSE
chr136386884CT0.00024AGO1+FALSE
chr274334790AG0.00870TET3+FALSE
chr123636452AG0.00294HNRNPR-FALSE
chr1150704486TC0.00947CTSS-TRUEAluJoSINE,Alu
chr417803604TC0.00172DCAF16-TRUEAluYSINE,Alu
chr1156233189CT5.51743E-05SMG5-FALSE
chr246414708GA0.00173PRKCE+FALSE
chr830535975TC5.05710E-05GSR-TRUEAluJrSINE,Alu
chr142644770CT1.21495E-06FOXJ3-FALSE
chr613789450TC0.00235MCUR1-TRUEAluSgSINE,Alu
chr167451522AT0.00883MIER1+FALSE
chr128567501AG0.00887.FALSE
chr671298815TA0.00287.FALSE
chr1687864349CA0.00981SLC7A5-FALSE
chr187200770CT0.00623SH3GLB1+FALSE
chr5204215AG0.00872.FALSEMER68SINE,Alu
chr3197400501CG0.00011RUBCN-FALSE
chr11668089GT0.00801SLC35E2-FALSEAluSzSINE,Alu
chr123835794AG0.00132E2F2-FALSE
chr194702991GC0.00397ARHGAP29-FALSE
chr1229736656GC0.00793TAF5L-FALSE
chr4129796171AG0.00540JADE1+FALSE
chr179125148GA0.00203IFI44+FALSE
chr123636274GT0.00032HNRNPR-FALSE
chr265496187GA0.00266ACTR2+FALSE
chr1161930908GA0.00083ATF6+FALSE
chr1120165040TC0.00195ZNF697-FALSE
chr145987557GC0.00921PRDX1-FALSE
chr1298943011AG1.18352E-07TMPO+TRUEAluSzSINE,Alu
chr2174090635TA0.00138ZAK,MLK7-AS1+,-FALSE
chr192862888AG0.00029.FALSEAluJrSINE,Alu
chr1350102992TC0.00956SETDB2-PHF11,PHF11+FALSEL2aSINE,Alu
chr120224152GA0.00581OTUD3+FALSE
chr118707394TA4.23595E-06RPL27A+FALSE
chr112058869CT0.00027MFN2+FALSE
chr1811852628CT0.00048GNAL,CHMP1B+FALSE
chr2174090636TA0.00043ZAK,MLK7-AS1+,-FALSE
chr7300181GA2.39021E-07FAM20C+FALSE
chr2197000455TC0.00426STK17B-FALSEAluSzSINE,Alu
chr111782984AG0.00542.FALSEAluSxSINE,Alu
chr116939857CT0.00091NBPF1-FALSE
chrX123046757AG0.00535XIAP+TRUEAluSzSINE,Alu
chr1143398850GT0.00639.FALSE
chr315456307TC0.00939METTL6-TRUEAluJrSINE,Alu
chr1912742509AG0.00717.FALSEAluSxSINE,Alu
chr1939433142TA0.00215FBXO17-FALSEAluJbSINE,Alu
chr1109856391GC0.00569SORT1-FALSE
chr19160900TC0.00893.FALSEAluJbSINE,Alu
chr1248175093AG0.00690SLC48A1+FALSE
chr3149683508AG0.00397PFN2-FALSE
chr16162583GA0.00281CHD5-FALSE
chr145975345AG0.00357MMACHC+TRUEAluSg7SINE,Alu
chr11597403CT0.00015CDK11B,SLC35E2B-FALSE
chr3181431106CG0.00542SOX2-OT,SOX2+FALSE
chr537290554TC0.00010.FALSEAluSzSINE,Alu
chr410442610TC0.00174ZNF518B-FALSE
chr1033189606AG0.00011ITGB1-FALSE
chr127107651AT0.00200ARID1A+FALSE(A)nSINE,Alu
chr143996594TC0.00836PTPRF+FALSE(CGGCTC)nSINE,Alu
chr1179042697AG0.00092FAM20B+TRUEAluSx1SINE,Alu
chr110520378TC0.00047.FALSEAluSx1SINE,Alu
chr203848225AG0.00075MAVS+TRUEAluJrSINE,Alu
chr1163116048GT3.38683E-05RGS5-FALSE
chr261315734AG0.00396KIAA1841+TRUEAluSgSINE,Alu
chr417802956TC0.00249DCAF16-TRUEAluSzSINE,Alu
chr124293612GA0.00366.FALSE
chr1220231455TC0.00274RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr41205680CA0.00247CTBP1-AS,CTBP1+,-FALSE
chr145244432TA0.00154.FALSE
chr23609064GA0.00614RNASEH1-AS1+FALSEMER33SINE,Alu
chr146076533AG0.00832NASP+TRUEAluSxSINE,Alu
chr136067886TC1.98907E-05PSMB2-TRUEAluSzSINE,Alu
chr120238574CT6.32696E-05OTUD3+FALSE
chr129446554CA0.00682EPB41,TMEM200B+,-FALSE
chr1119574537GA0.00255WARS2-FALSE
chr514769103GA0.00104ANKH-FALSE
chr744918672TC0.00150PURB-TRUEAluSgSINE,Alu
chr1145273431AG0.00203NBPF20,NOTCH2NL+FALSE
chr315113733TC0.00228RBSN-TRUEAluSz6SINE,Alu
chr5132440285CG0.00322HSPA4+FALSE
chr1542861705AG0.00518HAUS2+TRUEAluJbSINE,Alu
chr1150937963AG0.00658CERS2-FALSEG-richSINE,Alu
chr1149913513TC0.00495OTUD7B-TRUEMER96BSINE,Alu
chr13730332TC6.29937E-05CEP104-TRUEAluSx3SINE,Alu
chr1145375858TC0.00069NBPF20,NBPF10+FALSE
chr1231468953GA0.00085EXOC8-FALSE
chr540852810GT0.00276CARD6+FALSE
chr1276423035AG0.00025PHLDA1-FALSE
chr1121134204GT0.00557SRGAP2-AS1,SRGAP2B,SRGAP2C+,-FALSE(TTTCCT)nSINE,Alu
chr136067858GA0.00293PSMB2-FALSEAluSzSINE,Alu
chr1151862656TC0.00933THEM4-TRUEAluSpSINE,Alu
chr11252468TC0.00096CPSF3L-TRUEAluJrSINE,Alu
chr1205583610TC0.00501ELK4-FALSE
chr132661594CT0.00528TXLNA+FALSE(T)nSINE,Alu
chr1210761846AG0.00224MAGOHB-FALSE
chr119542415TC0.00204LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chr16283264TC0.00378ICMT-TRUEAluSx3SINE,Alu
chr1819445881TA0.00224MIB1+FALSE
chr1736104904AG0.00442HNF1B-FALSEG-richSINE,Alu
chr2179969921AT0.00203SESTD1-FALSE
chr11421186CT0.00834ATAD3B+FALSE
chr16582470TC0.00370NOL9-TRUEAluSx1SINE,Alu
chr136529549AG0.00806.FALSEAluJrSINE,Alu
chr314986098TC3.23580E-05FGD5-AS1-TRUEFLAM_CSINE,Alu
chr337366459CA2.94197E-05GOLGA4+FALSE
chr794297293GT0.00573PEG10+FALSE
chr211323079TA0.00586ROCK2-FALSE(TA)nSINE,Alu
chr720178460TC6.50978E-05MACC1,LOC101927668-TRUEAluYSINE,Alu
chr35026731CT0.00824BHLHE40+FALSE
chr139500293TA0.00552NDUFS5+FALSE
chr265539437CT0.00076SPRED2-FALSE
chr1179042551AG0.00336FAM20B+TRUEAluSx1SINE,Alu
chr227170943AC0.00684DPYSL5+FALSE(CA)nSINE,Alu
chr120976589CT0.00407PINK1,PINK1-AS+,-FALSE
chr841399722AG0.00065LOC102723729,GINS4+,-FALSEAluSx3SINE,Alu
chr6149915565AG0.00198RPS18P9+FALSE
chr16282400TC0.00809ICMT-TRUEAluSzSINE,Alu
chr7100271437CA0.00026GNB2+FALSE
chr110517538TC0.00840.FALSEAluSx1SINE,Alu
chr5177019196GC0.00509TMED9+FALSE(GCG)nSINE,Alu
chr121766762CG0.00259NBPF3+FALSE
chr132697109AG0.00015EIF3I+FALSEAluSpSINE,Alu
chr457326875AG0.00797PAICS+TRUEAluSx1SINE,Alu
chr110519064TC0.00515.FALSEAluSx3SINE,Alu
chr128825331AG0.00051PHACTR4+TRUEAluSgSINE,Alu
chr224224134AG9.70565E-06.FALSEAluSpSINE,Alu
chr921863618TC0.00148MTAP+FALSEAluYSINE,Alu
chr153289688AG0.00059ZYG11B+TRUEAluSzSINE,Alu
chr2203744241TC0.00511.FALSEAluSxSINE,Alu
chr237331065TC0.00527.FALSEAluSx1SINE,Alu
chr1610623553TC0.00024EMP2-TRUEAluSpSINE,Alu
chr613788297TC0.00979MCUR1-TRUEAluSxSINE,Alu
chr3156259229TC1.62025E-06SSR3-TRUEAluSq2SINE,Alu
chr2128952006AG0.00701UGGT1+TRUEAluSx1SINE,Alu
chr1757279257AG0.00077PRR11+TRUEAluSq2SINE,Alu
chr11344893AG7.94078E-08.FALSEAluSgSINE,Alu
chr314186757CG0.00864XPC-FALSE
chr7156764972GA0.00871NOM1+FALSE
chr119232017TG0.00519IFFO2-FALSE
chr1423794554GA0.00966BCL2L2-PABPN1,PABPN1+FALSEA-richSINE,Alu
chr1201488170AG0.00997.FALSEAluSzSINE,Alu
chr1179829401TC0.00118TOR1AIP2-TRUEAluJrSINE,Alu
chr6153314040GA0.00041MTRF1L-FALSE
chr16283264TC0.00095ICMT-TRUEAluSx3SINE,Alu
chr344790759TC1.45198E-07KIAA1143-TRUEAluYSINE,Alu
chr110517659TC0.00679.FALSEAluSx1SINE,Alu
chr1144922523CT0.00566NBPF20,PDE4DIP+,-FALSE
chr1160967856TC0.00027F11R-TRUEAluSpSINE,Alu
chr2203742141TC0.00044.FALSEAluJbSINE,Alu
chr120976023TC6.30669E-06PINK1,PINK1-AS+,-FALSEAluSzSINE,Alu
chr1937073373TC0.00492ZNF529,ZNF529-AS1+,-FALSEAluYSINE,Alu
chr1168213597AG0.00481.FALSEAluSx1SINE,Alu
chr1810752666CT1.68498E-05PIEZO2-FALSE
chr2201774185TC6.12175E-05.FALSEAluSzSINE,Alu
chr110518831TC0.00213.FALSEAluSx1SINE,Alu
chr1244572643CA0.00681ADSS-FALSE
chr128661767AG0.00242MED18+TRUEAluSgSINE,Alu
chr921331486TG0.00675KLHL9-FALSE
chr274442407AG0.00122MTHFD2+FALSE
chr119586360TC0.00023MRTO4+FALSE
chr1745761102TG0.00296.FALSE
chr11571802GA0.00067CDK11B-FALSE
chr220648946CT0.00531RHOB+FALSE
chr1736936846CT0.00277PIP4K2B-FALSE
chr1951305797TC0.00397C19orf48-TRUEAluSgSINE,Alu
chr642857136AG2.38933E-09RPL7L1+TRUEAluSpSINE,Alu
chr1114443474AG9.14620E-06AP4B1-AS1,AP4B1+,-FALSEAluSpSINE,Alu
chr1563363388GT0.00096TPM1+FALSE
chr1146740502CG0.00692CHD1L+FALSE
chr1144918957TA0.00484NBPF20,PDE4DIP+,-FALSE
chr1146650091CA0.00361PDIA3P1+FALSE
chr110520117TC0.00188.FALSEAluSxSINE,Alu
chr16694574GA0.00983THAP3,DNAJC11+,-FALSE
chr119586520AG0.00846MRTO4+TRUEAluSzSINE,Alu
chr1145368665GA0.00031NBPF20,NBPF10+FALSE
chr146828700AG0.00012NSUN4+FALSE
chr1231557138CG0.00394EGLN1-FALSE
chr410447986TA0.00077ZNF518B-FALSE
chr19328120AG0.00024H6PD+TRUEAluJrSINE,Alu
chr12133389998TC0.00829GOLGA3-FALSE
chr593018883AT0.00181FAM172A-FALSE(TCA)nSINE,Alu
chr7156763332AG0.00090NOM1+TRUEAluSxSINE,Alu
chr1684778690CT0.00799USP10+FALSE
chr1109865630CT0.00647SORT1-FALSE
chr11595603CG0.00017CDK11B,SLC35E2B-FALSEAluJrSINE,Alu
chr153712215GT0.00458LRP8-FALSE
chr2174090630CA0.00025ZAK,MLK7-AS1+,-FALSE
chr1615794312CT0.00796NDE1+FALSEAluSzSINE,Alu
chr185113229AG0.00687SSX2IP-FALSE
chr1167765170GT0.00185UNC93B1-FALSE
chr6150046734TC0.00248NUP43-FALSE
chr1773886219TC8.52474E-05TRIM65-TRUEFRAMSINE,Alu
chr136752811CT2.19602E-12THRAP3+FALSE
chr579923843TC0.00363DHFR-TRUEAluSpSINE,Alu
chr7152345392TC0.00643XRCC2-TRUEAluSx1SINE,Alu
chr1220231461TC0.00050RNU5F-1,BPNT1+,-FALSEAluYSINE,Alu
chr1144833386AG0.00325NBPF20+FALSEL1MEcSINE,Alu
chr120982216TA0.00065DDOST-FALSE
chr1203277253AG0.00624BTG2+FALSE
chr1110466466TC0.00377CSF1+FALSE
chr1162497663GA0.00365UHMK1+FALSE
chr11595077TC0.00031CDK11B,SLC35E2B-TRUEAluSgSINE,Alu
chr126143725AT0.00988SEPN1+FALSEAluSxSINE,Alu
chr116529016CT0.00024ARHGEF19-FALSE
chr255199563GT0.00172RTN4-FALSE
chrX16782947AG0.00225.FALSEAluJbSINE,Alu
chr1168218543AG0.00547.FALSEAluSzSINE,Alu
chr1155214017CA0.00946GBA-FALSEAluSx3SINE,Alu
chr187811070GA0.00396LMO4+FALSE
chr122161275GA0.00600HSPG2-FALSE
chr11469546GA0.00766ATAD3A+FALSE
chr2210885022CT0.00325RPE+FALSE
chr178184325AG0.00150USP33-FALSE
chr1155853061AG0.00146SYT11+TRUEAluJbSINE,Alu
chr2035521048AT0.00727TLDC2,SAMHD1+,-FALSE
chr1088729314CT8.29001E-05ADIRF+FALSE
chr570503941CA0.00130.FALSE
chr1197125427TC0.00331ZBTB41-FALSE
chr1145689492AG0.00075NBPF20,NBPF10+TRUEAluSgSINE,Alu
chr1144822294GC0.00371NBPF20,NBPF9+FALSE
chr1148751869AG0.00011.FALSE
chr132687473TG0.00892TMEM234,EIF3I+,-FALSE
chr1200375848CT0.00586ZNF281-FALSE(T)nSINE,Alu
chr152375677TC0.00542RAB3B-FALSEMIRbSINE,Alu
chr8145159709CA0.00314MAF1+FALSE
chr119934758CG1.75422E-05MINOS1,MINOS1-NBL1,RPS14P3+FALSE
chr19163400TC0.00726.FALSEAluSpSINE,Alu
chr1591044378CT0.00453IQGAP1+FALSE
chr823290112TC0.00121ENTPD4-TRUEAluYSINE,Alu
chr1113239382GA0.00519MOV10+FALSE
chr110520072TC0.00226.FALSEAluSxSINE,Alu
chr110517314TC8.82505E-05.FALSEAluJrSINE,Alu
chr116952920GA0.00475CROCCP2-FALSE
chr128661633AG0.00053MED18+TRUEAluSgSINE,Alu
chr192941357AG0.00296GFI1-FALSE
chr111847346GC0.00547C1orf167,MTHFR+,-FALSE
chr1160967857TC0.00032F11R-TRUEAluSpSINE,Alu
chr119543797TC0.00754LOC101927895,EMC1+,-FALSEAluSzSINE,Alu
chrX2825075TC0.00410ARSD-TRUEAluSx1SINE,Alu
chr1779780692TC0.00116MCRIP1-TRUE
chr146077268AG0.00012NASP+TRUEAluSc8SINE,Alu
chr1225357680TC0.00861ETFRF1+FALSE
chr1169101307CT0.00405ATP1B1+FALSE
chr116889596TC0.00093NBPF1-TRUE
chr119586532AG0.00166MRTO4+TRUEAluSzSINE,Alu
chr131346203AC0.00050SDC3-FALSE
chr2128949255AG0.00063UGGT1+TRUEAluSgSINE,Alu
chr153291420AG6.80791E-05ZYG11B+TRUEAluJrSINE,Alu
chr111810674GA0.00279AGTRAP+FALSE
chr19163393TC0.00327.FALSEAluSpSINE,Alu
chr136068237TC0.00974PSMB2-TRUEAluScSINE,Alu
chr1160920966CT0.00980ITLN2-FALSE
chr119586501AG2.56701E-06MRTO4+TRUEAluSzSINE,Alu
chr124999468GT0.00075SRRM1+FALSE(T)nSINE,Alu
chr116945027TC0.00483CROCCP2-FALSEL1ME3CzSINE,Alu
chr11118888992CG0.00222RPS25-FALSE

Differential Expression Gene Analysis