RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	74349080	A	G	0.00094		.	FALSE	AluSz	SINE,Alu
chr1	156565045	C	A	0.00995	GPATCH4	-	FALSE
chr2	50147867	T	A	0.00896	NRXN1	-	FALSE	(GT)n	SINE,Alu
chr4	155457051	A	T	0.00378	PLRG1	-	FALSE	L2d2	SINE,Alu
chr7	6064007	T	A	0.00551	EIF2AK1	-	FALSE
chr1	16913612	G	A	0.00145	NBPF1	-	FALSE
chr1	207942535	A	G	0.00102	CD46	+	TRUE	AluSg4	SINE,Alu
chr1	9643155	A	G	0.00015		.	FALSE	AluSx	SINE,Alu
chr1	139233	C	A	0.00653	LOC729737	-	FALSE
chr1	94351065	A	T	0.00142	GCLM	-	FALSE
chr1	118165973	C	T	3.23914E-05	FAM46C	+	FALSE
chr4	177241194	C	T	6.44832E-08	SPCS3	+	FALSE
chr1	15818065	T	C	0.00372	CASP9	-	TRUE	AluJb	SINE,Alu
chr4	17804847	T	C	0.00512	DCAF16	-	TRUE	AluSx	SINE,Alu
chr2	85772404	C	A	0.00015	GGCX	-	FALSE
chr3	195963395	A	G	0.00028		.	FALSE
chr15	42860107	A	G	0.00194	HAUS2	+	TRUE	AluSg	SINE,Alu
chr1	44035352	C	T	0.00055	PTPRF	+	FALSE
chr14	103941379	C	A	0.00705	MARK3	+	FALSE
chr1	207943325	A	G	0.00158	CD46	+	TRUE	AluSx1	SINE,Alu
chr4	10443059	A	T	0.00187	ZNF518B	-	FALSE
chr2	47703548	G	A	5.05442E-05	MSH2	+	FALSE
chr1	10517653	T	C	0.00256		.	FALSE	AluSx1	SINE,Alu
chr1	53289547	A	G	0.00352	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr2	32535747	A	G	0.00250		.	FALSE	AluJb	SINE,Alu
chr7	112579815	G	T	0.00997	BMT2	-	FALSE	(CGC)n	SINE,Alu
chr4	187647832	C	G	0.00592		.	FALSE
chr20	36147563	T	C	0.00313	BLCAP	-	TRUE
chr7	152343700	T	C	0.00061	XRCC2	-	TRUE	AluSx3	SINE,Alu
chr6	57034845	G	A	0.00581	ZNF451,LOC101927211	+,-	FALSE
chr1	229730452	G	A	0.00236	TAF5L	-	FALSE
chr10	75009781	T	C	9.15447E-06	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr10	75009921	T	C	5.40286E-05	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr17	79476999	G	T	6.09622E-06	ACTG1	-	FALSE
chr6	24720534	T	C	0.00053		.	FALSE
chr1	3545194	C	G	0.00044	TPRG1L	+	FALSE
chr1	225706943	C	T	0.00229	ENAH	-	FALSE
chr3	20025661	C	T	4.83976E-05	RAB5A,PP2D1	+,-	FALSE
chr1	70904800	G	T	0.00678	CTH	+	FALSE
chr1	10520258	T	C	0.00396		.	FALSE	AluSx	SINE,Alu
chr2	206987108	T	C	0.00015		.	FALSE	AluSx	SINE,Alu
chr7	38764395	T	C	0.00139	VPS41	-	TRUE	AluSp	SINE,Alu
chr4	13604418	G	C	2.95746E-07	BOD1L1	-	FALSE
chr2	99813015	A	G	0.00235	MRPL30	+	TRUE	AluJb	SINE,Alu
chr4	185309401	A	G	0.00782	IRF2	-	FALSE
chr4	178281754	G	A	0.00057	NEIL3	+	FALSE
chr1	205737665	G	T	0.00025	RAB29	-	FALSE	AluSq2	SINE,Alu
chr6	79649800	C	G	0.00864	PHIP	-	FALSE
chr1	156613632	G	A	0.00187	BCAN	+	FALSE
chrX	123046306	A	G	0.00016	XIAP	+	TRUE	AluJb	SINE,Alu
chr1	1593828	G	C	0.00348	CDK11B,SLC35E2B	-	FALSE
chr1	150783968	T	A	0.00368	ARNT	-	FALSE
chr2	24494638	T	G	0.00507	ITSN2	-	FALSE	(TATCCT)n	SINE,Alu
chr1	220231338	T	C	0.00762	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr1	76229185	T	A	0.00280	ACADM	+	FALSE
chr1	10517550	T	C	0.00457		.	FALSE	AluSx1	SINE,Alu
chr1	16933623	G	A	0.00789	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr6	47594192	C	T	0.00591	CD2AP	+	FALSE
chr3	121435624	C	T	0.00063	GOLGB1	-	FALSE
chr1	28662182	A	G	0.00402	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	145293566	G	A	0.00103	NBPF20,NBPF10	+	FALSE
chr2	98388811	C	G	0.00123	TMEM131	-	FALSE
chr2	37328027	T	C	0.00026		.	FALSE
chr1	26143728	C	T	0.00800	SEPN1	+	FALSE	AluSx	SINE,Alu
chr1	9160963	T	C	0.00354		.	FALSE	AluJb	SINE,Alu
chr12	53936878	G	T	0.00036	ATF7	-	FALSE
chr1	1647871	T	C	0.00906	CDK11B,CDK11A	-	FALSE
chr16	75479910	T	C	0.00026	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr3	112299732	A	G	0.00189	SLC35A5	+	FALSE
chr1	9324670	A	G	0.00734	H6PD	+	FALSE
chr10	1086810	T	A	0.00245	IDI2-AS1,IDI1	+,-	FALSE
chr16	75479891	T	C	9.48885E-06	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr16	89623607	A	G	0.00915	SPG7	+	FALSE
chr1	53291395	A	G	0.00323	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	52378211	T	C	0.00195	RAB3B	-	TRUE	FLAM_C	SINE,Alu
chr19	3121451	C	T	0.00567	GNA11	+	FALSE
chr1	16011005	G	C	0.00616	PLEKHM2	+	FALSE	(GCG)n	SINE,Alu
chr22	18571457	A	G	0.00493	PEX26	+	TRUE	AluSz	SINE,Alu
chr8	145159709	C	A	0.00314	MAF1	+	FALSE
chr1	11734730	C	T	4.90909E-09	MAD2L2	-	FALSE
chr2	201676441	G	A	0.00140	LOC101927795,BZW1	+,-	FALSE
chr1	28087457	G	T	0.00178	FAM76A	+	FALSE	(T)n	SINE,Alu
chr1	144930596	C	A	0.00103	NBPF20,PDE4DIP	+,-	FALSE
chr16	29454768	A	G	0.00564	SMG1P6,BOLA2-SMG1P6	-	FALSE
chr1	45975574	A	G	0.00613	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	45452227	G	C	0.00126	EIF2B3	-	FALSE
chr2	202032184	A	G	0.00954	CFLAR	+	FALSE	AluJo	SINE,Alu
chr1	15989141	C	G	0.00677		.	FALSE
chr1	45975669	A	G	0.00695	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	143189486	A	G	0.00122	LOC102723769	-	FALSE
chr1	19428086	G	T	0.00449	UBR4	-	FALSE
chr16	10625406	T	C	1.26372E-11	EMP2	-	TRUE	AluSx	SINE,Alu
chr1	144828857	C	G	4.37583E-07	NBPF20,NBPF9	+	FALSE
chr1	154128835	G	T	0.00032	TPM3	-	FALSE
chr2	64863970	C	T	9.52027E-09	SERTAD2	-	FALSE
chr15	42503333	T	C	0.00120	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr3	99886662	G	A	0.00011	CMSS1	+	FALSE
chr2	37328008	T	C	0.00733		.	FALSE
chr3	88101339	T	C	0.00531	CGGBP1	-	FALSE
chr6	158093827	C	T	0.00201	ZDHHC14	+	FALSE
chr8	144332082	T	C	7.73207E-05	ZFP41	+	FALSE
chr7	79848333	T	G	0.00322	GNAI1	+	FALSE
chr7	20177664	T	C	0.00089	MACC1,LOC101927668	-	TRUE	AluSx	SINE,Alu
chr1	27108139	A	T	0.00683	ARID1A	+	FALSE
chr1	27202835	T	C	0.00094		.	FALSE	AluSq2	SINE,Alu
chr5	25415881	T	C	0.00911		.	FALSE
chr1	26608019	T	A	3.63623E-05		.	FALSE
chr1	12401868	A	C	0.00526	VPS13D	+	FALSE
chr1	53250625	T	C	0.00178	ZYG11B	+	FALSE
chr7	75677504	C	T	0.00768	MDH2	+	FALSE
chr4	2940125	T	C	4.75438E-05	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr9	100777784	T	A	0.00080	ANP32B	+	FALSE
chr6	13790931	T	C	0.00948	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr6	26095642	A	G	0.00332		.	FALSE	AluY	SINE,Alu
chr1	10520819	T	C	0.00034	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	117530273	A	G	0.00270	PTGFRN	+	FALSE
chr1	762109	C	T	0.00026	LINC00115	-	FALSE
chr17	73940888	T	C	2.69053E-06	ACOX1	-	TRUE	AluSx1	SINE,Alu
chr1	118167524	C	T	0.00902	FAM46C	+	FALSE
chr1	66058513	A	G	0.00091	LEPR	+	FALSE
chr1	207942427	A	G	0.00822	CD46	+	TRUE	AluSg4	SINE,Alu
chr3	64081236	T	C	8.95068E-05	PRICKLE2,PRICKLE2-AS1	+,-	FALSE
chr10	121588038	A	C	0.00100	INPP5F	+	FALSE
chr4	57326329	A	G	0.00077	PAICS	+	TRUE	AluJr	SINE,Alu
chr2	11321880	C	T	0.00064	ROCK2	-	FALSE	AluSx1	SINE,Alu
chr2	3609064	G	A	0.00212	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr7	44841933	A	G	0.00192	PPIA	+	TRUE	AluSx	SINE,Alu
chr1	26604691	G	C	0.00043	CEP85	+	FALSE
chr1	89525966	T	C	0.00039	GBP1	-	FALSE
chr5	125962344	A	G	0.00101	PHAX	+	TRUE	AluSc	SINE,Alu
chr1	179044212	A	G	7.62870E-06	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	9162234	T	C	0.00896		.	FALSE	AluSx	SINE,Alu
chr1	10518688	T	C	0.00341		.	FALSE	AluSx1	SINE,Alu
chr1	157044418	G	C	0.00707		.	FALSE
chr8	1730491	A	G	5.38446E-06	CLN8	+	TRUE	AluSx1	SINE,Alu
chr3	75779650	G	C	0.00116	ZNF717	-	FALSE
chr1	27731933	C	A	1.77427E-09	WASF2	-	FALSE
chr2	101622886	T	A	0.00705	RPL31	+	FALSE
chr8	144357975	C	T	0.00444	GLI4	+	FALSE
chr1	142688597	C	T	0.00605		.	FALSE
chr16	10623705	T	C	0.00011	EMP2	-	TRUE	AluSp	SINE,Alu
chr5	150869672	A	T	0.00755	SLC36A1	+	FALSE
chr1	24022909	T	A	0.00177	RPL11	+	FALSE
chr1	67874697	T	C	0.00186	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr5	151041883	G	A	0.00343	SPARC	-	FALSE
chr3	195243002	C	A	0.00358	PPP1R2	-	FALSE
chr1	145511962	A	G	0.00187	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	145369476	A	G	0.00332	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr1	53359182	A	G	0.00321	ZYG11A	+	TRUE	AluSx	SINE,Alu
chr1	10521103	T	C	0.00788	DFFA	-	TRUE	AluY	SINE,Alu
chr1	19542310	T	C	0.00510	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	19585772	G	A	0.00576	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr2	61416406	T	G	0.00010	USP34	-	FALSE	AluSc8	SINE,Alu
chr1	33148045	A	G	0.00264	SYNC,RBBP4	+,-	FALSE	AluSx	SINE,Alu
chr1	35816903	C	T	0.00174	ZMYM4	+	FALSE
chr1	36529419	A	G	0.00842		.	FALSE	AluJr	SINE,Alu
chr8	38829416	A	G	0.00695	PLEKHA2	+	TRUE	AluYc	SINE,Alu
chr3	48787640	T	C	0.00320	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	6282324	T	C	0.00142	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	53291344	A	G	0.00088	ZYG11B	+	FALSE	(A)n	SINE,Alu
chr2	32539582	A	G	0.00419		.	FALSE	AluSp	SINE,Alu
chr9	130209956	A	T	0.00221	RPL12	-	FALSE
chr1	31532379	A	G	0.00061	PUM1	-	FALSE
chr1	9161011	T	C	3.85416E-05		.	FALSE	AluJb	SINE,Alu
chr1	67896040	G	A	1.31286E-05	SERBP1	-	FALSE
chr16	88789700	C	T	0.00703	PIEZO1	-	FALSE
chr12	133635613	T	C	0.00805		.	FALSE
chr2	201774185	T	C	0.00921		.	FALSE	AluSz	SINE,Alu
chr2	24225177	A	G	0.00375		.	FALSE	AluSx	SINE,Alu
chr8	144684445	G	A	0.00062		.	FALSE
chr12	1602602	A	G	8.31525E-05	ERC1	+	FALSE	AluSx	SINE,Alu
chr1	16945409	T	A	0.00105	CROCCP2	-	FALSE
chr1	46076462	A	G	1.23194E-07	NASP	+	TRUE	AluSx	SINE,Alu
chr1	6582470	T	C	0.00370	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	9642828	T	A	0.00148	SLC25A33	+	FALSE
chr3	179306775	C	T	7.88487E-06	MRPL47	-	FALSE
chr8	17503270	G	C	0.00410	MTUS1	-	FALSE
chr1	16133987	T	C	0.00707	UQCRHL	-	FALSE
chr1	24296856	T	G	0.00564		.	FALSE	AluSg	SINE,Alu
chr5	149829071	T	C	0.00407	RPS14	-	FALSE
chr2	1637531	A	G	0.00664	PXDN	-	FALSE
chr2	128601490	T	C	0.00013		.	FALSE	AluJr	SINE,Alu
chr2	36776056	T	A	0.00030	CRIM1	+	FALSE
chr1	168218522	A	G	0.00153		.	FALSE	AluSz	SINE,Alu
chr15	83826212	C	T	0.00278	HDGFRP3	-	FALSE	(CTT)n	SINE,Alu
chr1	3545198	T	C	3.01160E-05	TPRG1L	+	FALSE
chr1	155829140	C	G	0.00889	GON4L	-	FALSE
chr9	108152702	G	A	2.83018E-05	SLC44A1	+	FALSE
chr1	40537923	G	A	0.00609	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	63924020	C	T	0.00945	ITGB3BP	-	FALSE
chr1	19543457	T	C	4.71011E-07	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	10168802	A	G	6.92223E-05	BRK1	+	FALSE
chr16	1411036	A	G	0.00766	GNPTG	+	TRUE	AluSz	SINE,Alu
chrX	119572534	C	A	0.00387	LAMP2	-	FALSE
chr3	128338880	T	A	0.00828	RPN1	-	FALSE
chr2	9629306	G	T	0.00255	ADAM17	-	FALSE
chr3	14986111	T	C	0.00224	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	1344998	A	G	0.00235		.	FALSE	AluSg	SINE,Alu
chr1	9643028	A	G	0.00017		.	FALSE	AluSx	SINE,Alu
chr10	121437033	T	G	0.00357	BAG3	+	FALSE
chr6	42855256	A	G	0.00572	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr7	17384440	A	G	0.00373	AHR	+	TRUE	AluSx	SINE,Alu
chr1	19234134	A	G	0.00027	IFFO2	-	FALSE
chr12	69237558	A	G	0.00034	MDM2	+	TRUE
chr1	79125148	G	A	0.00203	IFI44	+	FALSE
chr7	6501832	A	C	0.00175	KDELR2	-	FALSE
chr1	214524566	T	C	0.00040	PTPN14	-	TRUE	AluSg	SINE,Alu
chr1	153917621	G	C	0.00020	DENND4B	-	FALSE
chr3	93846831	G	A	0.00547		.	FALSE	AluSq2	SINE,Alu
chr1	168218574	A	G	0.00898		.	FALSE	AluSz	SINE,Alu
chr3	32567573	G	A	0.00320	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr6	37138024	G	C	0.00892	PIM1	+	FALSE	(GCA)n	SINE,Alu
chr1	190234133	A	C	5.13910E-06	BRINP3	-	FALSE
chr1	28825427	A	G	0.00484	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr12	46577921	G	T	0.00306	SLC38A1	-	FALSE
chr1	53288870	A	G	3.51337E-08	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr11	94801640	A	C	0.00790	SRSF8	+	FALSE
chr1	1245100	C	T	0.00656	PUSL1	+	FALSE
chr15	72635829	A	C	0.00054	HEXA	-	FALSE
chr14	31916792	C	T	3.89824E-05	LOC101927124,DTD2	+,-	FALSE	AluSc8	SINE,Alu
chr1	142688511	T	C	0.00089		.	FALSE
chr5	37291446	T	C	6.87884E-05		.	FALSE	AluSx3	SINE,Alu
chr1	161559407	A	G	0.00376	FCGR2C	+	FALSE
chr1	24286327	G	A	0.00053	PNRC2	+	FALSE
chr3	183861750	A	C	1.09807E-05	EIF2B5	+	FALSE
chr2	37328075	T	C	0.00863		.	FALSE
chr17	80347528	T	C	0.00048	OGFOD3	-	TRUE	AluJb	SINE,Alu
chr1	172411496	A	G	0.00361	C1orf105,PIGC	+,-	FALSE
chr2	204162277	A	G	0.00097	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr1	6283439	T	C	0.00786	ICMT	-	TRUE	AluSx3	SINE,Alu
chr4	66439443	T	C	0.00593	EPHA5	-	FALSE
chr2	91843429	G	A	0.00037	LOC654342	-	FALSE
chr1	120694990	C	A	0.00325		.	FALSE	A-rich	SINE,Alu
chr3	58306666	A	G	0.00139		.	FALSE	AluSz	SINE,Alu

RBP	HNRNPC
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR052IYH
Platform	HiSeq
Pubmed ID	32252787

HNRNPC - Target Gene Network