RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	11119950	G	A	4.66412E-05	SRM	-	FALSE
chr1	19984104	A	C	0.00402	MINOS1-NBL1,NBL1	+	FALSE
chr5	37290400	T	C	0.00085		.	FALSE	AluSz	SINE,Alu
chr1	207943325	A	G	0.00158	CD46	+	TRUE	AluSx1	SINE,Alu
chr1	10517635	T	C	0.00523		.	FALSE	AluSx1	SINE,Alu
chr8	128944712	A	C	0.00033	PVT1	+	FALSE
chr14	50053348	G	A	0.00067		.	FALSE	7SLRNA	SINE,Alu
chr9	130268408	T	C	6.51633E-05	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr1	1595074	T	C	0.00296	CDK11B,SLC35E2B	-	TRUE	AluSg	SINE,Alu
chr1	33149376	A	G	0.00284	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr9	17829	G	A	0.00142	WASH1	-	FALSE
chr2	101622888	T	A	0.00210	RPL31	+	FALSE
chr1	16891365	G	A	0.00609	NBPF1	-	FALSE
chr21	34728215	A	G	0.00153	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr1	39470995	A	C	0.00036	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr5	43575020	T	C	8.37337E-06	NNT-AS1	-	TRUE	AluSq2	SINE,Alu
chr14	72041443	C	T	0.00842	SIPA1L1	+	FALSE
chr1	145273345	T	C	0.00190	NBPF20,NOTCH2NL	+	FALSE
chr3	32567573	G	A	0.00701	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr1	17313654	C	T	0.00886	ATP13A2	-	FALSE
chr5	112312528	T	C	0.00827	DCP2	+	FALSE
chr1	212277616	C	T	0.00248	DTL	+	FALSE
chr14	75202856	A	G	3.12821E-09	FCF1	+	TRUE	AluSx	SINE,Alu
chr1	10520067	T	C	2.08449E-05		.	FALSE	AluSx	SINE,Alu
chrX	123043142	A	G	0.00045	XIAP	+	TRUE	AluSz	SINE,Alu
chr2	37334139	T	C	0.00146	EIF2AK2	-	TRUE	AluSz	SINE,Alu
chr3	170893070	G	A	0.00071	TNIK	-	FALSE
chr2	23926233	C	T	0.00907	KLHL29	+	FALSE
chr1	19953120	G	A	0.00027	MINOS1,MINOS1-NBL1	+	FALSE
chr1	33148691	A	G	0.00032	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	120164552	G	A	0.00023	ZNF697	-	FALSE
chrX	123046779	A	G	0.00629	XIAP	+	TRUE	AluSz	SINE,Alu
chr5	132203384	T	A	0.00651	UQCRQ	+	FALSE
chr1	16889596	T	C	0.00093	NBPF1	-	TRUE
chr16	11931210	G	T	0.00292	RSL1D1	-	FALSE
chr1	54382632	T	C	0.00219		.	FALSE	AluSq2	SINE,Alu
chr3	150262004	A	T	0.00167	SERP1	-	FALSE
chr2	238499528	T	G	0.00332	RAB17	-	FALSE
chr1	145511988	A	G	0.00965	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	21545089	C	T	0.00834	ECE1	-	FALSE	AluSx1	SINE,Alu
chr1	205737665	G	T	0.00025	RAB29	-	FALSE	AluSq2	SINE,Alu
chr1	1337735	T	G	3.46713E-05	MRPL20	-	FALSE
chr3	24019990	A	G	0.00308	NR1D2	+	FALSE
chr1	59142713	T	C	0.00246	MYSM1	-	FALSE
chr1	28825331	A	G	1.84239E-05	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr19	63721	T	G	0.00602	WASH5P	-	FALSE
chr7	98015394	G	C	0.00118	BAIAP2L1	-	FALSE
chr1	47133835	C	A	1.43471E-05	ATPAF1	-	FALSE
chr1	3545200	G	A	0.00676	TPRG1L	+	FALSE
chr10	79552092	C	T	0.00159	DLG5	-	FALSE
chr4	128756704	A	G	0.00271		.	FALSE	AluSx	SINE,Alu
chr16	88767769	G	C	0.00420	RNF166	-	FALSE
chr1	40537941	A	C	0.00489	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	89525966	T	C	0.00039	GBP1	-	FALSE
chr8	30536437	T	C	0.00062	GSR	-	FALSE	AluSp	SINE,Alu
chr2	242512138	A	G	9.62871E-05	BOK	+	FALSE
chr1	9416151	G	A	0.00292	SPSB1	+	FALSE
chr1	25688276	A	G	0.00187	TMEM50A	+	FALSE
chr12	133298355	A	G	0.00024	PGAM5	+	TRUE	AluSp	SINE,Alu
chr14	75202288	C	T	0.00706	FCF1	+	FALSE	AluSc	SINE,Alu
chr1	10517659	T	C	0.00516		.	FALSE	AluSx1	SINE,Alu
chr1	173864944	G	T	2.40127E-05		.	FALSE
chr1	109856391	G	C	0.00569	SORT1	-	FALSE
chr1	16909220	T	C	0.00449	NBPF1	-	FALSE
chr3	112720117	G	T	0.00125	GTPBP8	+	FALSE
chr1	44171144	T	A	0.00108	KDM4A-AS1,KDM4A	+,-	FALSE
chr2	37327670	T	C	5.08697E-08		.	FALSE
chr1	21545089	C	T	0.00010	ECE1	-	FALSE	AluSx1	SINE,Alu
chr1	23636275	G	T	0.00258	HNRNPR	-	FALSE
chr1	27203728	A	T	0.00528		.	FALSE
chr3	44839350	A	C	0.00837	KIF15	+	FALSE
chr5	52389817	T	A	0.00868	ITGA2	+	FALSE
chr3	86992161	C	G	0.00050	VGLL3	-	FALSE	(GT)n	SINE,Alu
chr1	12164538	G	A	8.95385E-07	TNFRSF8	+	FALSE
chr1	52520866	C	T	0.00195	TXNDC12	-	FALSE
chr2	37331555	T	C	0.00132		.	FALSE	AluJb	SINE,Alu
chr1	36067851	T	C	0.00269	PSMB2	-	TRUE	AluSz	SINE,Alu
chr5	126889370	C	T	0.00713	PRRC1	+	FALSE
chr1	204524846	A	G	0.00940	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	9643106	A	G	0.00088		.	FALSE	AluSx	SINE,Alu
chr1	169101270	T	G	0.00036	ATP1B1	+	FALSE	(T)n	SINE,Alu
chr8	144662353	G	A	0.00951	EEF1D	-	FALSE
chr1	93617546	T	C	0.00026	TMED5	-	FALSE
chr1	22400707	C	G	0.00158	CDC42	+	FALSE	AluSc8	SINE,Alu
chr1	26802401	T	G	4.43852E-05	HMGN2	+	FALSE
chr3	124686323	A	T	0.00146	HEG1	-	FALSE
chr1	39305021	G	T	0.00027	RRAGC	-	FALSE
chr2	99812414	A	G	9.82924E-05	MRPL30	+	TRUE	AluSx	SINE,Alu
chr5	157184013	A	G	0.00631	LSM11	+	TRUE	AluY	SINE,Alu
chr1	15736656	A	G	0.00958	EFHD2	+	FALSE
chr1	9163328	T	C	0.00287		.	FALSE	AluSp	SINE,Alu
chr4	57326960	A	G	2.00220E-09	PAICS	+	TRUE	AluSx1	SINE,Alu
chr2	198416727	T	A	0.00378	HSPE1-MOB4,MOB4	+	FALSE
chr1	142804471	C	G	0.00555		.	FALSE	MIRb	SINE,Alu
chr15	31619607	G	A	0.00887	KLF13	+	FALSE
chr2	87821033	C	A	0.00474		.	FALSE
chr1	10519936	T	C	0.00072		.	FALSE	AluJr	SINE,Alu
chr1	53291382	A	G	0.00132	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr2	191555984	T	A	0.00171	NAB1	+	FALSE
chr1	9160958	T	C	0.00108		.	FALSE	AluJb	SINE,Alu
chr3	49506286	G	T	0.00052	DAG1	+	FALSE	AluJb	SINE,Alu
chr1	24086794	G	T	0.00309	TCEB3	+	FALSE	(T)n	SINE,Alu
chr1	229736656	G	C	0.00793	TAF5L	-	FALSE
chr1	52306075	T	C	0.00135	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr2	232319613	C	T	0.00022	NCL	-	FALSE
chr1	220232066	T	C	0.00673	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr3	181430508	G	A	3.55222E-06	SOX2-OT,SOX2	+	FALSE
chr1	16927039	C	T	0.00040	NBPF1	-	FALSE
chr1	24296871	G	C	0.00733		.	FALSE	AluSg	SINE,Alu
chr1	28662199	A	G	7.40709E-05	MED18	+	TRUE	AluSq2	SINE,Alu
chr5	180682612	A	T	0.00235	CTC-338M12.4	+	FALSE
chr3	10192798	A	G	0.00722	VHL	+	TRUE	AluSx1	SINE,Alu
chr4	113152490	G	A	0.00221		.	FALSE
chr2	37327702	T	C	8.81739E-07		.	FALSE
chr6	29912348	A	G	0.00429		.	FALSE
chr4	17488286	T	G	0.00027	QDPR	-	FALSE
chr1	32799434	C	T	0.00227	MARCKSL1	-	FALSE
chr10	75009921	T	C	0.00639	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr21	34728146	A	G	0.00070	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr1	28930023	G	A	5.17411E-07	TAF12	-	FALSE
chr2	9770610	A	G	0.00466	YWHAQ	-	FALSE
chr1	45975584	T	C	0.00327	MMACHC	+	FALSE	AluSx4	SINE,Alu
chr1	109855152	A	C	0.00227	SORT1	-	FALSE	A-rich	SINE,Alu
chr1	163309219	A	T	0.00023	NUF2	+	FALSE
chr1	244572643	C	A	0.00560	ADSS	-	FALSE
chr1	114306369	A	T	0.00834	RSBN1	-	FALSE
chr19	11560461	A	G	0.00034	PRKCSH	+	TRUE	AluSx	SINE,Alu
chr1	183595345	A	T	0.00383	ARPC5	-	FALSE
chr1	21766776	G	C	0.00343	NBPF3	+	FALSE
chr1	212114666	C	G	0.00858	INTS7	-	FALSE
chr1	46075664	A	G	0.00537	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	237063504	A	G	0.00900	MTR	+	FALSE	L1ME3F	SINE,Alu
chr1	9162456	T	C	0.00043		.	FALSE	AluSx	SINE,Alu
chr16	11929653	C	T	0.00333	RSL1D1	-	FALSE	LTR14B	SINE,Alu
chr4	177252326	A	G	0.00098	SPCS3	+	TRUE
chr5	95236459	C	T	0.00330	ELL2	-	FALSE
chr17	67539228	G	C	0.00200		.	FALSE
chr1	10518845	T	C	0.00882		.	FALSE	AluSx1	SINE,Alu
chr2	113334241	A	G	0.00388	POLR1B	+	TRUE
chr4	165998642	T	C	0.00036	TMEM192	-	TRUE	AluSg	SINE,Alu
chr3	45959759	T	C	0.00818	FYCO1	-	FALSE
chr1	10517300	T	C	0.00113		.	FALSE	AluJr	SINE,Alu
chr1	179055020	C	T	0.00738	TOR3A	+	FALSE
chr1	10521260	T	C	0.00658	DFFA	-	TRUE	AluY	SINE,Alu
chr1	101443701	A	G	0.00749	SLC30A7	+	FALSE
chr1	16958833	T	A	0.00765		.	FALSE
chr1	148561089	T	C	0.00010	NBPF15	+	FALSE
chr7	6064011	T	A	0.00246	EIF2AK1	-	FALSE
chr10	61548852	G	A	0.00693	CCDC6	-	FALSE
chr1	17522430	A	G	0.00684		.	FALSE
chr2	206861649	T	A	0.00066	INO80D	-	FALSE
chr3	141667632	T	G	1.45044E-05	TFDP2	-	FALSE
chr1	1595586	T	C	0.00051	CDK11B,SLC35E2B	-	TRUE	AluJr	SINE,Alu
chr3	195635455	T	C	0.00158	TNK2	-	FALSE
chr1	36067817	T	C	0.00938	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	16945409	T	A	0.00290	CROCCP2	-	FALSE
chr1	31342374	A	C	0.00446	SDC3	-	FALSE	(A)n	SINE,Alu
chr3	124948045	G	C	0.00784	ZNF148	-	FALSE
chr1	120612194	C	G	0.00561	NOTCH2	-	FALSE	(CCG)n	SINE,Alu
chr12	9098987	T	A	0.00180	M6PR	-	FALSE
chr19	53914395	A	G	0.00227	ZNF765	+	TRUE	AluSx	SINE,Alu
chr1	32697110	A	T	5.19592E-06	EIF3I	+	FALSE	AluSp	SINE,Alu
chr2	99812289	A	G	0.00040	MRPL30	+	TRUE	AluSx	SINE,Alu
chr6	42856156	A	G	0.00190	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr1	51434560	G	A	6.87938E-05	CDKN2C	+	FALSE
chr16	48387296	A	G	0.00058	LONP2,MIR5095	+	TRUE	AluJb	SINE,Alu
chr1	52306079	T	A	0.00033	NRDC	-	FALSE	(TCA)n	SINE,Alu
chr3	194999609	G	T	0.00796	ACAP2	-	FALSE
chr2	46612338	T	G	0.00018	EPAS1	+	FALSE
chr16	10623576	T	C	0.00013	EMP2	-	TRUE	AluSp	SINE,Alu
chr2	206981832	T	C	0.00251		.	FALSE	AluJb	SINE,Alu
chr9	139417333	G	A	0.00463	NOTCH1	-	FALSE
chr4	17803616	T	C	4.59289E-05	DCAF16	-	TRUE	AluY	SINE,Alu
chr17	263367	A	T	2.02495E-05	LOC105371430,C17orf97	+,-	FALSE
chr1	197475873	G	A	0.00844	DENND1B	-	FALSE
chr1	68940887	T	G	0.00293	DEPDC1	-	FALSE	MIR	SINE,Alu
chr6	42856905	A	G	4.80826E-12	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	6282298	T	C	2.81673E-05	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	54858511	C	T	0.00124	SPTBN1	+	FALSE
chr15	30781885	C	T	0.00380		.	FALSE
chr1	186281696	T	G	0.00564	PRG4,TPR	+,-	FALSE
chr1	6283264	T	C	0.00479	ICMT	-	TRUE	AluSx3	SINE,Alu
chr10	101992810	T	C	0.00456	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr3	15113847	T	C	0.00026	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	100657328	A	G	0.00682	DBT	-	FALSE	(AC)n	SINE,Alu
chr1	145513098	A	G	0.00514	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	153643449	G	C	0.00704	ILF2	-	FALSE
chr1	145273431	A	G	7.55666E-05	NBPF20,NOTCH2NL	+	FALSE
chr2	216225584	G	T	0.00848	FN1	-	FALSE
chr1	26765033	A	G	0.00324	DHDDS	+	TRUE	AluJr	SINE,Alu
chr1	179042551	A	G	0.00336	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr17	42877749	T	C	0.00287	GJC1	-	TRUE	AluSg	SINE,Alu
chr2	47562582	G	A	0.00484	LOC101927043	-	FALSE	BC200	SINE,Alu
chr12	133298465	A	G	5.98085E-08	PGAM5	+	TRUE	AluSp	SINE,Alu
chr1	36067749	T	C	0.00735	PSMB2	-	TRUE	AluSz	SINE,Alu
chr2	201774341	T	C	0.00073		.	FALSE	AluSz	SINE,Alu
chr1	84971969	G	T	0.00626	GNG5	-	FALSE
chr1	145369589	T	C	0.00696	NBPF20,NBPF10	+	FALSE	L1MC4	SINE,Alu
chr6	13789467	T	C	0.00019	MCUR1	-	TRUE	AluSg	SINE,Alu
chr4	6644273	C	G	0.00000	MRFAP1	+	FALSE
chr1	233518885	T	C	0.00021	MLK4	+	FALSE	(TTTC)n	SINE,Alu
chr1	36067752	T	C	0.00075	PSMB2	-	TRUE	AluSz	SINE,Alu
chr6	13788222	T	C	0.00490	MCUR1	-	TRUE	AluSx	SINE,Alu
chr1	145322843	C	T	0.00428	NBPF20,NBPF10	+	FALSE
chr10	75008797	T	C	0.00824	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr17	73886249	T	C	0.00069	TRIM65	-	TRUE	FRAM	SINE,Alu
chr22	21304408	A	G	0.00967	CRKL	+	FALSE
chr1	10520180	T	C	0.00959		.	FALSE	AluSx	SINE,Alu
chr2	37331750	T	C	1.79348E-08		.	FALSE	AluJb	SINE,Alu
chr19	39669597	T	C	0.00610	PAK4	+	FALSE	(TG)n	SINE,Alu
chr1	19542401	T	C	0.00010	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	1337736	C	G	0.00012	MRPL20	-	FALSE
chr1	25894468	C	G	0.00357	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	10520178	T	C	2.78615E-06		.	FALSE	AluSx	SINE,Alu
chr1	19934879	T	C	0.00454	MINOS1,MINOS1-NBL1,RPS14P3	+	FALSE
chr1	16929056	C	T	0.00398	NBPF1	-	FALSE
chr3	57913810	G	A	0.00477	SLMAP	+	FALSE
chr6	33385535	A	G	0.00671		.	FALSE
chr2	37327589	T	C	0.00253		.	FALSE
chr16	81064656	A	G	0.00120	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	9161550	G	A	0.00196		.	FALSE
chr4	6302519	G	A	0.00195	WFS1	+	FALSE
chr10	79552107	G	A	0.00092	DLG5	-	FALSE
chr4	17802819	T	C	0.00112	DCAF16	-	TRUE	AluSz	SINE,Alu
chr6	31324202	T	A	0.00300		.	FALSE
chr1	207942472	A	G	0.00273	CD46	+	TRUE	AluSg4	SINE,Alu
chr1	10520702	T	C	0.00883	DFFA	-	TRUE	AluSc8	SINE,Alu
chr3	160213317	T	A	0.00208	KPNA4	-	FALSE
chr1	35320644	A	T	0.00627	SMIM12	-	FALSE
chr1	143189486	A	G	0.00122	LOC102723769	-	FALSE
chr1	109746825	A	G	0.00281	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr1	16254872	C	A	4.87895E-08	SPEN	+	FALSE
chr1	118167515	C	T	0.00018	FAM46C	+	FALSE
chr1	144930596	C	A	0.00103	NBPF20,PDE4DIP	+,-	FALSE
chr1	19953120	G	A	0.00212	MINOS1,MINOS1-NBL1	+	FALSE
chr15	42503334	C	T	0.00448	TMEM87A	-	FALSE	(T)n	SINE,Alu
chr5	180236449	G	C	0.00011	MGAT1	-	FALSE
chr1	220231276	T	C	0.00937	RNU5F-1,BPNT1	+,-	FALSE	AluY	SINE,Alu
chr3	179117033	T	C	0.00019	GNB4	-	TRUE	AluSz	SINE,Alu
chr4	119551832	G	A	0.00522	LOC729218	+	FALSE
chr12	101295434	A	G	0.00695	ANO4	+	FALSE
chr9	34088016	G	A	0.00226	DCAF12	-	FALSE
chr2	101587455	C	T	0.00178	NPAS2	+	FALSE
chr2	217366194	C	A	0.00359		.	FALSE
chr2	202028841	A	G	0.00641	CFLAR	+	TRUE	AluSx1	SINE,Alu
chr20	35520976	T	C	0.00254	TLDC2,SAMHD1	+,-	FALSE	FLAM_A	SINE,Alu
chr3	30733403	A	T	0.00110	TGFBR2	+	FALSE	(TA)n	SINE,Alu
chr1	17199259	G	A	0.00217	LOC440570	+	FALSE
chr6	118029818	T	G	0.00119	NUS1	+	FALSE
chr5	64964627	T	C	0.00998	SGTB	-	TRUE	AluSx1	SINE,Alu
chr16	75479467	T	C	0.00160	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr1	111991845	C	A	0.00803	WDR77,ATP5F1	+,-	FALSE
chr19	65489	C	A	0.00494	WASH5P	-	FALSE	L2b	SINE,Alu
chr3	73115390	C	T	0.00462	PPP4R2	+	FALSE	(AT)n	SINE,Alu
chr17	4721376	A	G	0.00177	PLD2	+	FALSE
chr1	70718280	A	C	0.00946		.	FALSE
chr3	32567573	G	A	0.00320	DYNC1LI1	-	FALSE	(AT)n	SINE,Alu
chr4	177249593	T	G	0.00038	SPCS3	+	FALSE	(T)n	SINE,Alu
chr3	14526656	A	G	0.00189	SLC6A6	+	FALSE

RBP	SART3
Knock-Method	shRNA
RBP Family	RRM_1
Biosample Name	K562
Tissue Type	Haematopoietic_and_lymphoid_tissue
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR954HAY
Platform	HiSeq
Pubmed ID	32252787

SART3 - Target Gene Network