RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr2	99812876	A	G	0.00394	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	200375837	T	G	0.00490	ZNF281	-	FALSE	(T)n	SINE,Alu
chr1	229586611	T	C	0.00794	NUP133	-	TRUE	AluSz	SINE,Alu
chr5	79923843	T	C	0.00363	DHFR	-	TRUE	AluSp	SINE,Alu
chr20	3905907	A	G	0.00325	PANK2	+	TRUE	AluSx	SINE,Alu
chr2	152334421	A	G	0.00464		.	FALSE	AluSq	SINE,Alu
chr17	43471481	G	A	0.00412		.	FALSE
chr1	32799510	T	G	0.00048	MARCKSL1	-	FALSE
chr2	204162597	A	G	0.00296	CYP20A1	+	TRUE	AluSx	SINE,Alu
chr4	17804279	G	A	0.00606	DCAF16	-	FALSE	(A)n	SINE,Alu
chr5	118174733	T	C	0.00037	DTWD2	-	TRUE	AluY	SINE,Alu
chr1	45280426	A	G	0.00802		.	FALSE	AluSx	SINE,Alu
chr1	24022437	A	G	0.00342	RPL11	+	FALSE
chr1	110136321	T	A	0.00721	GNAI3	+	FALSE
chr8	12880299	A	G	1.70760E-05	KIAA1456	+	TRUE	AluJo	SINE,Alu
chr2	103332887	T	A	0.00515	MFSD9	-	FALSE	L2d2	SINE,Alu
chr2	91805938	A	G	0.00000		.	FALSE	MLT1H1	SINE,Alu
chr15	90819619	A	G	5.14004E-06		.	FALSE	AluSx	SINE,Alu
chr1	143189473	C	A	0.00626	LOC102723769	-	FALSE
chr18	11852628	C	T	0.00048	GNAL,CHMP1B	+	FALSE
chr12	32794600	A	C	5.34959E-05	FGD4	+	FALSE
chr1	16112795	A	G	0.00106	FBLIM1	+	FALSE
chr3	15114759	G	A	1.99109E-05	RBSN	-	FALSE
chr2	109301115	T	A	0.00150	LIMS1	+	FALSE
chr6	97592897	A	C	0.00144	MMS22L	-	FALSE
chr2	70316299	C	A	0.00650	PCBP1	+	FALSE
chr19	19793795	A	G	0.00030	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr3	119212015	G	A	0.00024	POGLUT1	+	FALSE
chr3	15113842	T	C	0.00100	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	33148213	A	G	0.00958	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chrX	9863112	A	G	0.00498	SHROOM2	+	FALSE
chr4	39550977	T	C	0.00987	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr1	17345245	C	T	0.00701	SDHB	-	FALSE
chr1	20826784	T	C	0.00204	MUL1	-	FALSE
chr7	158590740	A	T	0.00211	ESYT2	-	FALSE
chr1	117078729	A	G	0.00983	CD58	-	FALSE
chr4	160280309	G	T	0.00770	RAPGEF2	+	FALSE	(T)n	SINE,Alu
chr1	94995236	G	A	0.00803	F3	-	FALSE
chr5	41917695	C	T	0.00019	C5orf51	+	FALSE
chr1	142449	G	A	0.00073		.	FALSE	MIRb	SINE,Alu
chr1	9163290	T	C	0.00016		.	FALSE	AluSp	SINE,Alu
chr1	231154918	G	T	0.00022	FAM89A	-	FALSE	(T)n	SINE,Alu
chr1	59124803	C	T	0.00974	MYSM1	-	FALSE
chr7	79848337	G	A	0.00037	GNAI1	+	FALSE
chr5	180236449	G	C	0.00011	MGAT1	-	FALSE
chr2	173462230	G	T	0.00100	PDK1	+	FALSE	MIRc	SINE,Alu
chr2	128064448	G	T	0.00637	MAP3K2	-	FALSE	(GT)n	SINE,Alu
chr4	39551167	T	C	0.00361	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr4	165998152	T	C	0.00288	TMEM192	-	TRUE	AluSx	SINE,Alu
chr4	178281754	G	A	0.00057	NEIL3	+	FALSE
chr3	119212010	A	G	0.00685	POGLUT1	+	FALSE
chr3	45721836	A	G	0.00714	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr2	37331627	T	C	0.00910		.	FALSE	AluJb	SINE,Alu
chr6	150047370	T	C	0.00084	NUP43	-	TRUE	AluSc	SINE,Alu
chr1	24296856	T	G	0.00564		.	FALSE	AluSg	SINE,Alu
chr3	98299365	T	G	0.00133	CPOX	-	FALSE
chr2	99992822	A	C	0.00266	EIF5B	+	FALSE
chr19	11257673	T	C	0.00211	SPC24	-	TRUE	AluSp	SINE,Alu
chr1	43391824	A	T	0.00552	SLC2A1	-	FALSE
chr19	19793729	A	G	0.00124	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr11	68523337	T	C	0.00016	CPT1A	-	TRUE	AluSq	SINE,Alu
chr5	149823799	A	T	0.00672	RPS14	-	FALSE
chr2	118854088	C	T	0.00543	INSIG2	+	FALSE
chr8	144684445	G	A	0.00062		.	FALSE
chr16	48386354	A	G	0.00064	LONP2,MIR5095	+	TRUE	AluSz6	SINE,Alu
chr1	10519912	T	C	0.00185		.	FALSE	AluJr	SINE,Alu
chr6	71299074	A	G	0.00824		.	FALSE	AluSx1	SINE,Alu
chr1	23381596	T	C	0.00762	KDM1A	+	FALSE
chr1	40537923	G	A	6.08919E-05	CAP1	+	FALSE	(A)n	SINE,Alu
chr3	14986471	T	C	3.70393E-05	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr12	66516911	A	T	0.00067	LLPH	-	FALSE
chr2	38522141	G	T	0.00147	ATL2	-	FALSE
chr5	137891109	C	G	0.00031	HSPA9	-	FALSE
chr5	72801329	T	A	0.00073	BTF3	+	FALSE
chr1	24934236	A	G	0.00596	NCMAP	+	TRUE	AluSz6	SINE,Alu
chr5	74324902	C	T	0.00574	GCNT4	-	FALSE
chr1	26144435	C	G	0.00131	SEPN1	+	FALSE
chr9	131457039	C	T	0.00148	SET	+	FALSE
chr2	128949255	A	G	0.00063	UGGT1	+	TRUE	AluSg	SINE,Alu
chr1	10519200	T	C	0.00059		.	FALSE	AluSx3	SINE,Alu
chr7	44917291	T	C	0.00019	PURB	-	TRUE	AluSz	SINE,Alu
chr3	42610515	G	A	0.00099	SEC22C	-	FALSE
chr7	73150511	T	C	0.00414	ABHD11	-	FALSE
chr1	207943325	A	G	0.00158	CD46	+	TRUE	AluSx1	SINE,Alu
chr4	39549703	T	C	0.00150	UGDH-AS1,SMIM14	+,-	FALSE	AluSp	SINE,Alu
chr22	18571457	A	G	0.00493	PEX26	+	TRUE	AluSz	SINE,Alu
chr1	222802926	C	T	0.00035	MIA3	+	FALSE
chr1	184663581	T	C	0.00265	EDEM3	-	FALSE
chr3	58112440	A	G	8.00661E-07	FLNB	+	FALSE
chr1	9740896	C	T	0.00078	PIK3CD,PIK3CD-AS2	+,-	FALSE	MLT1F1	SINE,Alu
chr9	9442082	T	G	0.00052	PTPRD	-	FALSE	7SLRNA	SINE,Alu
chr18	29410068	C	T	0.00807	TRAPPC8	-	FALSE
chr1	6283260	T	C	0.00071	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	220154768	C	T	0.00067	RNU5F-1,EPRS	+,-	FALSE
chr1	36068295	T	C	0.00057	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	120611964	G	C	0.00130	NOTCH2	-	FALSE
chr3	37407769	A	T	0.00406	GOLGA4	+	FALSE
chr1	9161011	T	C	7.97270E-05		.	FALSE	AluJb	SINE,Alu
chr1	19513110	G	A	0.00189	UBR4	-	FALSE
chr2	101638888	A	G	0.00127	TBC1D8	-	FALSE
chr5	40826638	C	A	0.00749	LOC100506548	-	FALSE	LTR78	SINE,Alu
chr10	13320111	G	T	0.00571	PHYH	-	FALSE
chr17	37618251	T	G	0.00959	CDK12	+	FALSE	G-rich	SINE,Alu
chr1	144053567	C	T	0.00353		.	FALSE
chr17	57279258	A	G	0.00114	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	226172221	T	C	0.00030	SDE2	-	FALSE	L1MEf	SINE,Alu
chr14	75202856	A	G	3.12821E-09	FCF1	+	TRUE	AluSx	SINE,Alu
chr5	37290571	T	C	0.00097		.	FALSE	AluSz	SINE,Alu
chr2	99812978	A	G	0.00167	MRPL30	+	TRUE	AluJb	SINE,Alu
chr2	128603114	T	C	0.00143		.	FALSE	AluSp	SINE,Alu
chr10	13320236	C	T	0.00011	PHYH	-	FALSE
chr1	20976078	T	C	0.00344	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr20	35520935	T	C	0.00120	TLDC2,SAMHD1	+,-	FALSE	FLAM_A	SINE,Alu
chr1	145512951	A	G	4.65248E-05	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr16	10626615	C	T	0.00489	EMP2	-	FALSE	(T)n	SINE,Alu
chr6	31601344	T	C	0.00569		.	FALSE
chrX	118672561	T	C	2.49155E-08	CXorf56	-	TRUE	AluSx	SINE,Alu
chr1	54412181	T	C	0.00524	LRRC42	+	FALSE
chr1	171751051	A	G	0.00522	METTL13	+	FALSE
chr10	51374391	C	G	0.00028	TIMM23B	+	FALSE
chr1	156675377	G	C	0.00935	CRABP2	-	FALSE
chr4	2940486	T	C	7.87098E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	38327584	T	C	0.00017	INPP5B	-	TRUE	AluSx3	SINE,Alu
chr1	145512925	A	G	0.00238	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	145375869	G	A	0.00480	NBPF20,NBPF10	+	FALSE
chr1	32661578	C	T	0.00623	TXLNA	+	FALSE	(T)n	SINE,Alu
chrX	77084007	T	C	0.00141	MAGT1	-	TRUE	AluSz	SINE,Alu
chr4	89181451	T	C	8.32748E-05	PPM1K	-	TRUE	AluSx1	SINE,Alu
chr3	195964298	A	G	0.00263		.	FALSE
chr1	10437811	A	G	0.00800	KIF1B	+	TRUE	AluSg	SINE,Alu
chr1	179843781	T	C	0.00888	TOR1AIP2	-	TRUE	AluJb	SINE,Alu
chr1	16889503	T	C	0.00130	NBPF1	-	FALSE	L1MC4	SINE,Alu
chr1	21795388	A	G	0.00732	NBPF3	+	FALSE
chr1	6282371	T	C	0.00897	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	154128827	A	T	0.00724	TPM3	-	FALSE
chr1	20977380	T	C	0.00695	PINK1,PINK1-AS	+,-	FALSE
chr16	87440117	C	T	1.93168E-06	ZCCHC14	-	FALSE
chr12	53936878	G	T	0.00036	ATF7	-	FALSE
chr10	47098568	C	T	0.00178	LINC00842	-	FALSE
chr1	117945049	G	A	0.00030	MAN1A2	+	FALSE
chr1	204526710	A	G	0.00082	MDM4	+	TRUE	AluSx	SINE,Alu
chr12	69237013	A	G	0.00659	MDM2	+	TRUE
chr4	3219613	A	C	0.00361	HTT	+	FALSE
chr2	37329238	T	C	0.00754		.	FALSE	AluJr4	SINE,Alu
chr1	95362949	A	T	0.00114	CNN3	-	FALSE	(A)n	SINE,Alu
chr1	19585493	A	G	0.00199	MRTO4	+	TRUE	AluSc8	SINE,Alu
chr1	25812110	T	C	0.00639	TMEM57	+	FALSE
chr1	6582470	T	C	0.00522	NOL9	-	TRUE	AluSx1	SINE,Alu
chr2	96573123	C	T	0.00413	ANKRD36C	-	FALSE
chr1	52381348	T	G	0.00500	RAB3B	-	FALSE
chr1	214524496	T	C	0.00114	PTPN14	-	TRUE	AluSg	SINE,Alu
chr17	46941448	G	T	0.00017	CALCOCO2	+	FALSE	AluSz6	SINE,Alu
chr1	180082702	G	C	0.00019	CEP350	+	FALSE
chr1	10041422	A	G	0.00115	NMNAT1	+	TRUE	AluYj4	SINE,Alu
chr3	86993604	G	T	0.00253	VGLL3	-	FALSE	AluJo	SINE,Alu
chr1	179326295	A	G	0.00035	SOAT1	+	TRUE
chr1	214557685	C	A	0.00205	PTPN14	-	FALSE
chr1	214813487	A	G	0.00027	CENPF	+	FALSE
chr1	110466466	T	C	0.00135	CSF1	+	FALSE
chr4	164245873	T	A	0.00014	NPY1R	-	FALSE
chr6	42047404	A	G	0.00182	TAF8	+	TRUE	AluSz6	SINE,Alu
chr17	49041692	T	C	2.35976E-05	SPAG9	-	TRUE	AluSx	SINE,Alu
chr1	247353355	G	A	0.00628		.	FALSE
chr3	48787118	T	C	0.00248	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr1	10517485	T	C	0.00040		.	FALSE	AluSx1	SINE,Alu
chr1	113511341	A	G	0.00283		.	FALSE	AluY	SINE,Alu
chr1	118502750	T	C	0.00922	WDR3,SPAG17	+,-	FALSE	(GT)n	SINE,Alu
chr15	33064791	G	A	0.00203	FMN1	-	FALSE
chr5	6491892	G	A	0.00707	UBE2QL1	+	FALSE
chr2	37327685	T	C	0.00057		.	FALSE
chr1	46660295	T	C	0.00871	POMGNT1	-	FALSE
chr7	17384440	A	G	0.00373	AHR	+	TRUE	AluSx	SINE,Alu
chr1	117529752	C	A	0.00024	PTGFRN	+	FALSE
chr3	75474643	T	C	0.00850	FAM86DP	-	TRUE	AluJo	SINE,Alu
chr17	65334886	T	C	8.05380E-09	PSMD12	-	TRUE	AluSq	SINE,Alu
chr3	195460892	A	G	0.00057		.	FALSE	AluSg	SINE,Alu
chr4	144442611	T	C	0.00899	SMARCA5	+	FALSE
chr1	10520439	T	C	0.00293		.	FALSE	AluSx1	SINE,Alu
chr3	86994021	T	C	0.00596	VGLL3	-	FALSE
chr11	111930765	T	C	0.00764	DLAT	+	FALSE
chr1	145688664	A	T	0.00013	NBPF20,NBPF10,RNF115	+	FALSE
chr1	6282401	T	C	0.00026	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	31426815	A	G	0.00797	PUM1	-	FALSE
chr3	5025537	G	A	0.00195	BHLHE40	+	FALSE	(GT)n	SINE,Alu
chr11	94606941	T	C	0.00699	AMOTL1	+	FALSE
chr3	156258283	T	C	0.00686	SSR3	-	TRUE	AluYk3	SINE,Alu
chr3	119212012	A	C	0.00976	POGLUT1	+	FALSE
chr3	133307642	T	G	0.00523	CDV3	+	FALSE	(TT)n	SINE,Alu
chr15	41590932	A	G	0.00055	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr3	47386061	A	C	8.10198E-06	KLHL18	+	FALSE
chr21	34728144	A	G	2.75061E-05	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr1	245017462	G	A	0.00255	HNRNPU,SNORA100	-	FALSE
chr19	63721	T	G	0.00602	WASH5P	-	FALSE
chr17	73940918	T	C	6.48265E-05	ACOX1	-	TRUE	AluSx1	SINE,Alu
chr1	46078630	A	G	0.00131	NASP	+	FALSE
chr1	145512950	A	G	0.00996	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	144619903	T	A	0.00712	NBPF20,NBPF9	+	FALSE
chr16	11929653	C	T	0.00333	RSL1D1	-	FALSE	LTR14B	SINE,Alu
chr6	3022544	T	C	7.02821E-06	HTATSF1P2	-	TRUE	AluJr	SINE,Alu
chr1	154440548	G	T	0.00123	IL6R	+	FALSE	(TTGTT)n	SINE,Alu
chr1	144932151	G	T	0.00294	NBPF20,PDE4DIP	+,-	FALSE
chr1	46078630	A	G	4.65755E-11	NASP	+	FALSE
chr10	45499895	G	A	0.00255	ZNF22	+	FALSE
chr6	109001952	A	G	0.00978	FOXO3	+	FALSE	(A)n	SINE,Alu
chr8	124027562	C	T	0.00674	DERL1	-	FALSE
chr1	39470977	C	A	0.00347	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr20	10036845	A	G	0.00110	SNAP25-AS1,ANKEF1	+,-	FALSE
chr1	46076468	A	G	0.00069	NASP	+	TRUE	AluSx	SINE,Alu
chr2	202029999	T	G	0.00350	CFLAR	+	FALSE	(TTA)n	SINE,Alu
chr3	40503772	T	A	0.00153	RPL14	+	FALSE
chr1	20238572	A	T	0.00950	OTUD3	+	FALSE
chr15	91044378	C	T	0.00453	IQGAP1	+	FALSE
chr4	6718811	A	G	1.36854E-07	BLOC1S4	+	FALSE	FLAM_A	SINE,Alu
chr1	988503	A	T	8.91206E-06	AGRN	+	FALSE
chr1	11298093	C	T	1.54321E-14	MTOR	-	FALSE
chr2	99772827	A	G	4.47582E-05	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr1	16576291	A	G	0.00842	FBXO42	-	FALSE	A-rich	SINE,Alu
chr4	39549701	T	C	0.00269	UGDH-AS1,SMIM14	+,-	FALSE	AluSp	SINE,Alu
chr3	196555443	C	A	3.82991E-09	PAK2	+	FALSE
chr1	156563898	T	C	0.00216	NAXE	+	FALSE
chr12	125511942	A	G	0.00596	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	16894514	C	T	0.00348	NBPF1	-	FALSE
chr1	138266	C	T	0.00802	LOC729737	-	FALSE
chr1	144598755	G	A	0.00743	NBPF20	+	FALSE
chr1	45244411	C	A	0.00234	RPS8	+	FALSE
chr1	1653046	T	A	0.00686	CDK11B,CDK11A	-	FALSE
chr4	17804785	T	C	0.00273	DCAF16	-	TRUE	AluSx	SINE,Alu
chr1	10517300	T	C	0.00011		.	FALSE	AluJr	SINE,Alu
chr1	145284883	A	G	0.00329	NBPF20,NOTCH2NL	+	FALSE	L2a	SINE,Alu
chr1	78414285	T	A	0.00256	FUBP1	-	FALSE
chr4	40138676	A	G	0.00157	N4BP2	+	FALSE
chr1	151095753	A	G	0.00256	GABPB2	+	TRUE	AluSz	SINE,Alu
chr1	6948076	C	T	0.00221	CAMTA1	+	FALSE	L2a	SINE,Alu
chr11	48189152	A	C	0.00050	PTPRJ	+	FALSE
chr17	26672364	C	G	0.00645	TNFAIP1	+	FALSE
chr1	35647099	A	G	0.00092	SFPQ	-	FALSE
chr1	6354955	G	A	0.00090	ACOT7	-	FALSE
chr1	114306369	A	T	0.00341	RSBN1	-	FALSE
chr3	141012493	C	A	0.00249	PXYLP1	+	FALSE	MER58A	SINE,Alu
chr3	172350135	A	T	9.93187E-07	NCEH1	-	FALSE
chr3	45721891	A	G	0.00356	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr1	28835847	A	G	5.60567E-05	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr12	98942695	A	G	0.00204	TMPO	+	TRUE	AluSc	SINE,Alu
chr3	33038221	C	T	0.00379	GLB1	-	FALSE
chr5	79923793	T	C	0.00664	DHFR	-	TRUE	AluSp	SINE,Alu
chr1	55316322	A	G	0.00266	DHCR24	-	FALSE
chr1	224575827	T	C	0.00214	WDR26	-	FALSE
chr4	120378207	A	G	8.04303E-06	LOC645513	+	FALSE
chr1	10520154	T	C	0.00124		.	FALSE	AluSx	SINE,Alu
chr1	207942456	A	G	0.00322	CD46	+	TRUE	AluSg4	SINE,Alu
chr3	141879810	T	C	0.00348	GK5	-	FALSE	AluJr	SINE,Alu
chr11	68523567	T	C	0.00079	CPT1A	-	TRUE	AluSq	SINE,Alu
chr7	129472335	T	C	0.00420	UBE2H	-	FALSE	(CA)n	SINE,Alu
chr3	42592902	T	C	5.80731E-05	SEC22C	-	FALSE	AluJr	SINE,Alu
chr2	232576431	T	C	0.00593	PTMA	+	FALSE
chr1	24999101	G	T	0.00100	SRRM1	+	FALSE
chrX	2825119	T	C	0.00670	ARSD	-	TRUE	AluSx1	SINE,Alu
chr1	86049363	C	T	0.00064	CYR61	+	FALSE
chr21	40195059	A	G	0.00817	ETS2	+	FALSE
chr1	109465170	T	C	0.00565	GPSM2	+	FALSE
chr2	132278176	T	G	0.00291	LOC150776	+	FALSE
chr3	23959343	A	T	0.00116	RPL15	+	FALSE
chr3	119212009	G	A	0.00241	POGLUT1	+	FALSE
chr1	36529582	A	G	0.00476		.	FALSE	AluJr	SINE,Alu
chr1	46828700	A	G	0.00095	NSUN4	+	FALSE
chr5	177023119	T	A	0.00295	TMED9	+	FALSE
chr1	76252687	T	C	0.00021	RABGGTB	+	FALSE
chr1	36068231	T	C	0.00582	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	152884247	A	G	0.00642	IVL	+	FALSE
chr1	25894471	G	A	0.00778	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr12	69237509	A	G	1.55617E-05	MDM2	+	TRUE
chr1	19542250	T	C	9.94571E-09	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	6582425	T	C	0.00039	NOL9	-	TRUE	AluSx1	SINE,Alu
chr7	94060360	T	G	0.00014	COL1A2	+	FALSE
chr4	106767318	A	G	1.71247E-06	GSTCD	+	TRUE	AluJb	SINE,Alu
chr1	214524496	T	C	0.00879	PTPN14	-	TRUE	AluSg	SINE,Alu
chr3	192515510	G	T	0.00559	MB21D2	-	FALSE
chr1	36529549	A	G	0.00806		.	FALSE	AluJr	SINE,Alu
chr17	73940167	T	C	0.00035	ACOX1	-	TRUE	AluJb	SINE,Alu
chr1	15899630	T	C	0.00082	AGMAT	-	TRUE	AluSq2	SINE,Alu
chr2	161130868	A	C	0.00297	RBMS1	-	FALSE
chr7	74169234	G	T	8.95897E-05	GTF2I	+	FALSE
chr4	77082799	G	C	0.00148	SCARB2	-	FALSE
chr12	124146597	A	G	0.00121	GTF2H3	+	TRUE	AluSq2	SINE,Alu
chr1	220231959	T	C	2.75997E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	10520683	T	C	0.00457	DFFA	-	TRUE	AluSc8	SINE,Alu
chrX	118672641	T	C	0.00027	CXorf56	-	TRUE	AluSx	SINE,Alu
chr1	7828190	A	C	0.00049	CAMTA1	+	FALSE	(A)n	SINE,Alu
chr2	217366919	A	G	0.00709		.	FALSE	AluSz6	SINE,Alu
chr1	89447856	A	G	0.00218	KYAT3,RBMXL1	-	FALSE
chr1	10520715	T	C	0.00119	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	9331254	A	G	0.00793	H6PD	+	TRUE	AluSx	SINE,Alu
chr3	107763040	G	A	1.74111E-05	CD47	-	FALSE
chr9	132268442	A	G	0.00642	LINC00963	+	TRUE	AluJb	SINE,Alu
chr6	44222158	T	A	0.00781	SLC35B2	-	FALSE
chr1	28825331	A	G	0.00051	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	10517691	T	C	9.61087E-05		.	FALSE	AluSx1	SINE,Alu
chr2	174090630	C	A	0.00025	ZAK,MLK7-AS1	+,-	FALSE
chr4	10099340	T	C	0.00000	WDR1	-	FALSE
chr18	33831189	C	A	0.00763	MOCOS	+	FALSE
chr1	10043363	A	G	0.00429	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr2	85554792	C	A	0.00634	TGOLN2	-	FALSE
chr1	45476889	C	G	0.00969	HECTD3	-	FALSE
chr15	64657530	T	C	0.00580	KIAA0101	-	TRUE	FLAM_C	SINE,Alu
chr3	196044972	C	T	0.00258	TCTEX1D2,TM4SF19-TCTEX1D2	-	FALSE
chr6	160526904	T	G	0.00027	IGF2R	+	FALSE
chr17	60522250	A	G	0.00267	METTL2A	+	FALSE
chr3	45153708	G	A	4.36430E-08	CDCP1	-	FALSE
chr3	73116437	C	G	1.00237E-05	PPP4R2	+	FALSE
chr1	6282318	T	C	0.00418	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	206986926	T	C	0.00913		.	FALSE	AluJr	SINE,Alu
chr1	26774224	A	G	0.00295	DHDDS	+	TRUE	AluSz6	SINE,Alu
chr17	79514129	G	A	0.00164	FAAP100	-	FALSE
chr1	36067760	T	C	1.59237E-06	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	203277252	G	A	0.00559	BTG2	+	FALSE
chr2	128950515	A	G	0.00208	UGGT1	+	TRUE	AluSc	SINE,Alu
chr9	85861582	T	A	0.00604	FRMD3	-	FALSE	(TC)n	SINE,Alu
chr16	29454768	A	G	0.00564	SMG1P6,BOLA2-SMG1P6	-	FALSE
chr3	14986453	T	C	1.05842E-07	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr1	53289547	A	G	0.00352	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr1	569874	C	T	0.00076		.	FALSE
chr7	38763068	T	C	0.00361		.	FALSE	AluSx3	SINE,Alu
chr3	107765392	G	A	0.00038	CD47	-	FALSE
chr7	102004748	T	C	0.00050	LOC100289561,LOC100630923	+	FALSE
chr1	19543457	T	C	0.00569	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	176739404	A	G	7.21134E-06	TBL1XR1	-	FALSE
chr3	48787757	T	C	0.00605	PRKAR2A	-	TRUE	AluSp	SINE,Alu
chr1	36068237	T	C	0.00291	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	12942851	C	G	0.00013	IQSEC1	-	FALSE
chr2	99813007	A	G	0.00027	MRPL30	+	TRUE	AluJb	SINE,Alu
chr5	151041869	T	A	0.00305	SPARC	-	FALSE
chr2	187544230	T	A	0.00930	ITGAV	+	FALSE
chr1	62380298	G	A	0.00025	PATJ	+	FALSE
chr1	52817399	T	C	0.00346	CC2D1B	-	TRUE	AluSg4	SINE,Alu
chr5	37289051	T	C	0.00014		.	FALSE	AluSp	SINE,Alu
chr1	144594107	C	G	0.00706	NBPF20	+	FALSE
chr7	6063283	C	T	0.00032	AIMP2,EIF2AK1	+,-	FALSE
chr1	19543349	T	C	0.00090	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr3	156258319	T	C	0.00012	SSR3	-	TRUE	AluYk3	SINE,Alu
chr1	19441410	G	A	7.84348E-05	UBR4	-	FALSE
chr1	55207986	T	A	0.00872	MROH7-TTC4,TTC4	+	FALSE
chr7	2274221	T	C	0.00579	MRM2	-	TRUE	AluJr	SINE,Alu
chr2	160084473	A	C	0.00101	TANC1	+	FALSE
chr1	168213516	A	G	0.00233		.	FALSE	AluSx1	SINE,Alu
chr1	179852074	T	C	0.00309	TOR1AIP1	+	FALSE
chr1	120572572	C	T	0.00497	NOTCH2	-	FALSE
chr1	237064432	C	G	0.00019	MTR	+	FALSE
chr5	74072634	T	A	0.00187	NSA2	+	FALSE
chr17	61502458	T	A	0.00317	TANC2	+	FALSE
chr8	56985612	G	T	0.00028	RPS20	-	FALSE
chr3	141668758	T	C	2.84489E-05	TFDP2	-	TRUE	AluSz	SINE,Alu
chr8	146280802	C	T	0.00492	C8orf33	+	FALSE	LTR13	SINE,Alu
chr3	68685888	G	A	0.00280		.	FALSE
chr1	154987526	C	T	0.00218	ZBTB7B	+	FALSE
chr9	19376248	A	T	0.00821		.	FALSE
chrX	54587290	A	G	0.00504	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	20977533	G	C	0.00234	PINK1,PINK1-AS	+,-	FALSE
chr4	4291825	C	T	1.35815E-09	LYAR	-	FALSE
chr14	95555551	C	T	0.00404	DICER1	-	FALSE
chr10	94414146	A	G	0.00911	KIF11	+	FALSE
chr1	36322433	G	A	0.00663	AGO4	+	FALSE
chr2	24223291	A	G	0.00512	UBXN2A	+	TRUE	AluSc	SINE,Alu
chr1	145513017	A	G	0.00037	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr19	811933	C	T	0.00026	PTBP1	+	FALSE
chr1	19244904	G	A	0.00487	IFFO2	-	FALSE
chr1	16929148	G	A	0.00037	NBPF1	-	FALSE	LTR16B2	SINE,Alu
chr1	86118685	G	A	0.00440	ZNHIT6	-	FALSE
chr7	17384358	A	G	7.93091E-07	AHR	+	TRUE	AluSx	SINE,Alu
chr1	19586458	A	G	1.61978E-09	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	146627405	C	G	0.00074	PRKAB2	-	FALSE
chr17	4840811	A	G	0.00554	SLC25A11	-	FALSE
chr4	183721749	G	A	0.00324	TENM3	+	FALSE
chr1	109816462	C	T	0.00083	CELSR2	+	FALSE
chr1	152884246	G	T	0.00536	IVL	+	FALSE
chr1	35319119	A	T	0.00111	SMIM12	-	FALSE	L1ME4c	SINE,Alu
chr1	26144434	G	T	0.00945	SEPN1	+	FALSE
chr1	36067760	T	C	0.00203	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	207247478	C	T	0.00995	PFKFB2	+	FALSE	MER5B	SINE,Alu
chr1	230416410	G	T	0.00516	GALNT2	+	FALSE
chr1	235383188	A	G	0.00531	ARID4B	-	FALSE
chr1	120286837	A	G	0.00153	PHGDH	+	FALSE
chr17	5288083	T	A	0.00232	RABEP1	+	FALSE
chr12	133298428	A	G	7.41792E-11	PGAM5	+	TRUE	AluSp	SINE,Alu
chr7	5410425	G	C	0.00043	TNRC18	-	FALSE	(CACCGC)n	SINE,Alu
chr1	6282401	T	C	1.82955E-05	ICMT	-	TRUE	AluSz	SINE,Alu
chr6	96054540	G	T	0.00358	MANEA	+	FALSE
chr5	37291482	T	C	0.00146		.	FALSE	AluSx3	SINE,Alu
chr1	10518831	T	C	0.00410		.	FALSE	AluSx1	SINE,Alu
chr1	28661767	A	G	0.00144	MED18	+	TRUE	AluSg	SINE,Alu
chr1	150771703	T	C	0.00500	CTSK	-	FALSE
chr16	81064492	A	G	0.00935	CENPN	+	TRUE	AluSg	SINE,Alu
chr1	9161142	T	C	8.95302E-05		.	FALSE	AluSx	SINE,Alu
chr1	113672616	A	G	0.00553		.	FALSE	AluJb	SINE,Alu
chr1	145512078	A	G	0.00907	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr8	10689212	C	T	3.39921E-05	PINX1	-	FALSE
chr12	56510708	A	G	0.00050	RPL41	+	FALSE
chr1	16893691	C	A	0.00371	NBPF1	-	FALSE
chr19	9673276	C	A	0.00085		.	FALSE	Tigger1	SINE,Alu
chr14	50361171	C	T	0.00017	ARF6	+	FALSE	(T)n	SINE,Alu
chr4	39552148	T	C	0.00011	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	21545089	C	T	0.00834	ECE1	-	FALSE	AluSx1	SINE,Alu
chr5	130537761	A	G	0.00126	LYRM7	+	FALSE	AluJb	SINE,Alu
chr1	28607959	C	A	0.00215	SESN2	+	FALSE
chr5	17276848	C	A	0.00634	BASP1	+	FALSE	(A)n	SINE,Alu
chr1	16932912	T	C	0.00525	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr2	128952699	A	G	0.00497	UGGT1	+	TRUE	AluSp	SINE,Alu
chr1	16133987	T	C	0.00707	UQCRHL	-	FALSE
chr4	155457601	T	C	0.00423	PLRG1	-	FALSE
chr8	37351214	T	C	0.00109	LINC01605	-	FALSE
chr3	19992312	A	G	0.00798	RAB5A	+	FALSE
chr3	156259331	T	C	0.00088	SSR3	-	TRUE	AluSq2	SINE,Alu
chr4	39551087	T	C	0.00263	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr2	101622700	A	G	0.00387	RPL31	+	FALSE
chr16	10623639	T	C	0.00392	EMP2	-	TRUE	AluSp	SINE,Alu
chr15	49283066	T	G	0.00065	SECISBP2L	-	FALSE
chr1	115249239	G	A	0.00034	NRAS	-	FALSE
chr3	45721934	A	G	0.00011	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr2	232319499	T	A	0.00165	NCL	-	FALSE
chr1	184761350	T	C	0.00219	FAM129A	-	TRUE	AluJo	SINE,Alu
chr7	156763172	A	G	0.00874	NOM1	+	TRUE	AluSx	SINE,Alu
chr1	145281543	C	T	0.00028	NBPF20,NOTCH2NL	+	FALSE
chr1	2323041	T	C	0.00970	MORN1	-	FALSE
chr12	49745431	A	G	0.00033	DNAJC22	+	TRUE	AluSx3	SINE,Alu
chr1	27108245	T	C	0.00265	ARID1A	+	FALSE
chr2	242291743	A	G	0.00731	SEPT2	+	FALSE
chr1	1684346	G	C	0.00504	NADK	-	FALSE
chr2	96915238	T	C	2.48142E-05		.	FALSE	AluJr	SINE,Alu
chr1	40435513	C	A	0.00656	MFSD2A	+	FALSE
chr2	47604176	C	T	0.00328	EPCAM	+	FALSE
chr2	9770610	A	G	0.00466	YWHAQ	-	FALSE
chr1	150704413	T	C	0.00236	CTSS	-	TRUE	AluJo	SINE,Alu
chr1	20977221	A	T	0.00116	PINK1,PINK1-AS	+,-	FALSE
chr2	201676441	G	A	0.00140	LOC101927795,BZW1	+,-	FALSE
chr1	86049361	A	G	0.00036	CYR61	+	FALSE
chr1	3729182	T	C	0.00300	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	93617403	T	G	0.00053	TMED5	-	FALSE
chr1	6473294	A	G	0.00013		.	FALSE	Arthur1C	SINE,Alu
chr1	16933135	G	T	0.00937	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	28825370	A	G	0.00617	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr3	15483830	A	G	3.44106E-05	EAF1	+	FALSE
chr1	33145958	G	T	0.00080	SYNC,RBBP4	+,-	FALSE	(T)n	SINE,Alu
chr8	128752685	G	A	2.94991E-09	MYC	+	FALSE
chr3	15838717	A	C	0.00673	ANKRD28	-	FALSE	(A)n	SINE,Alu
chr1	19984104	A	C	0.00402	MINOS1-NBL1,NBL1	+	FALSE
chr14	75202645	A	G	3.73418E-05	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	9328086	G	A	0.00017	H6PD	+	FALSE	AluJr	SINE,Alu
chr6	143661166	A	C	0.00536	AIG1	+	FALSE
chr2	9629955	G	T	0.00866	ADAM17	-	FALSE
chr2	204312707	C	T	0.00154	RAPH1	-	FALSE
chr2	61764920	C	A	0.00363	XPO1	-	FALSE

RBP	DDX28
Knock-Method	shRNA
RBP Family	DEAD
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR222CSF
Platform	HiSeq
Pubmed ID	32252787

DDX28 - Target Gene Network