RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	38174987	T	C	0.00032	CDCA8	+	FALSE
chr1	109746825	A	G	0.00427	KIAA1324	+	TRUE	AluJb	SINE,Alu
chr3	133307637	G	T	0.00092	CDV3	+	FALSE
chr1	40537947	A	C	0.00295	CAP1	+	FALSE
chr2	191555984	T	A	0.00171	NAB1	+	FALSE
chr1	16889566	T	C	0.00305	NBPF1	-	TRUE
chr4	2940026	T	C	3.38773E-05	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr4	83812317	C	A	0.00553	SEC31A	-	FALSE
chr1	113212976	C	T	0.00043	CAPZA1	+	FALSE
chr2	113334357	G	A	8.00796E-05	POLR1B	+	FALSE	AluSz	SINE,Alu
chr1	65694080	C	T	0.00442	AK4	+	FALSE	(TCCC)n	SINE,Alu
chr4	84525974	T	C	0.00255	GPAT3	+	FALSE	(TTGTT)n	SINE,Alu
chr2	128602913	G	A	0.00230		.	FALSE
chr1	156692049	A	T	6.25184E-05	ISG20L2	-	FALSE
chr1	20978457	T	C	0.00036	PINK1-AS,DDOST	-	TRUE	AluY	SINE,Alu
chr3	50150389	A	G	0.00046	RBM5	+	TRUE	AluSx	SINE,Alu
chr4	2940164	T	C	0.00115	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	138980	G	T	0.00608	LOC729737	-	FALSE
chr9	86553587	G	A	0.00556	C9orf64	-	FALSE
chr1	16892279	C	A	0.00326	NBPF1	-	FALSE
chr3	196670094	G	C	0.00017	NCBP2-AS2	+	FALSE
chr2	198255334	A	T	0.00551		.	FALSE
chr1	6282215	T	C	0.00187	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	11298093	C	T	7.93954E-12	MTOR	-	FALSE
chr1	193054154	G	A	0.00757	TROVE2	+	FALSE
chr3	52084404	A	T	0.00032	DUSP7	-	FALSE	(A)n	SINE,Alu
chr19	42753034	A	G	0.00883	ERF	-	FALSE
chr1	21780000	G	T	0.00153	NBPF3	+	FALSE	ERVL-E-int	SINE,Alu
chr2	112252464	G	A	2.95640E-06	MIR4435-2HG	-	FALSE
chr1	144521099	A	G	0.00049	NBPF20	+	FALSE
chr16	10624996	T	C	0.00059	EMP2	-	TRUE	AluSx3	SINE,Alu
chr4	178256913	C	G	4.41796E-05	NEIL3	+	FALSE
chr1	28835934	A	G	0.00069	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	145513016	A	G	0.00069	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr4	57801194	A	T	0.00834	REST	+	FALSE
chr1	1662754	T	C	0.00107	SLC35E2	-	TRUE	AluY	SINE,Alu
chr3	42252924	G	C	0.00079	TRAK1	+	FALSE
chr3	72426071	T	A	0.00169	RYBP	-	FALSE	(T)n	SINE,Alu
chr1	19543249	T	C	0.00559	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr6	24719404	C	A	0.00024		.	FALSE
chr1	182353198	A	T	0.00473	GLUL	-	FALSE
chr4	103809324	A	C	0.00658	CISD2,SLC9B1	+,-	FALSE
chr1	100489835	A	G	0.00230	SLC35A3	+	TRUE	AluSg	SINE,Alu
chr1	9163319	T	C	0.00936		.	FALSE	AluSp	SINE,Alu
chr3	195678003	C	G	0.00146		.	FALSE	L4_A_Mam	SINE,Alu
chr1	33148196	A	G	0.00303	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr12	27953267	T	G	0.00233	KLHL42	+	FALSE
chr9	46687845	G	C	0.00389	FGF7P6,LOC554249,LOC102724238	+,-	FALSE
chr1	33148210	A	G	0.00342	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr3	30733403	A	T	0.00840	TGFBR2	+	FALSE	(TA)n	SINE,Alu
chr1	10518797	T	C	0.00421		.	FALSE	AluSx1	SINE,Alu
chr14	64951277	T	C	0.00077	ZBTB25	-	TRUE	AluSp	SINE,Alu
chr1	53291408	A	G	0.00021	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr3	172115589	G	T	0.00435	FNDC3B	+	FALSE
chr1	10520672	T	C	0.00584	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	16939857	C	T	0.00091	NBPF1	-	FALSE
chr11	65404868	T	G	0.00022	PCNX3	+	FALSE
chr2	96573123	C	T	0.00413	ANKRD36C	-	FALSE
chr1	241794056	C	A	0.00753	OPN3,CHML	-	FALSE
chr2	32539582	A	G	0.00419		.	FALSE	AluSp	SINE,Alu
chr1	161088583	T	G	0.00822	NIT1	+	FALSE
chr1	6282400	T	C	0.00385	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	201842434	T	C	1.94652E-05	FAM126B	-	TRUE	AluJb	SINE,Alu
chr1	143398850	G	T	0.00639		.	FALSE
chr3	195776630	T	A	7.10429E-08	TFRC	-	FALSE
chr1	19586458	A	G	2.46370E-10	MRTO4	+	TRUE	AluSz	SINE,Alu
chr12	98943018	A	G	0.00283	TMPO	+	TRUE	AluSz	SINE,Alu
chr1	40214261	A	G	0.00879	PPIE	+	TRUE	AluSq2	SINE,Alu
chr1	33066960	A	G	0.00079	ZBTB8A	+	TRUE	AluSq4	SINE,Alu
chr3	40503729	A	G	5.91625E-05	RPL14	+	FALSE
chr4	120979187	T	C	0.00046		.	FALSE	AluSg4	SINE,Alu
chr2	161130867	C	A	0.00034	RBMS1	-	FALSE
chr4	142945451	T	C	0.00585		.	FALSE
chr21	34728215	A	G	0.00153	IFNAR1	+	TRUE	AluSc	SINE,Alu
chr7	99917927	T	C	0.00320	SPDYE3	+	FALSE	AluJb	SINE,Alu
chr1	154554951	A	G	0.00554	ADAR	-	FALSE
chr1	27202812	T	C	0.00353		.	FALSE	AluSq2	SINE,Alu
chrX	77083846	T	C	0.00668	MAGT1	-	TRUE	AluSz	SINE,Alu
chr2	85776987	T	A	0.00059	GGCX	-	FALSE
chr2	37328034	T	C	5.88540E-05		.	FALSE
chr3	122293773	A	T	0.00852	DTX3L	+	FALSE
chr1	116235277	C	T	0.00396	VANGL1	+	FALSE
chr5	74072634	T	A	0.00187	NSA2	+	FALSE
chr6	31324202	T	A	0.00300		.	FALSE
chr3	49395694	T	C	0.00074	GPX1	-	FALSE
chr16	81064533	A	G	0.00686	CENPN	+	TRUE	AluSg	SINE,Alu
chr2	86979093	G	A	0.00591	RMND5A	+	FALSE
chr1	23408939	T	A	1.04314E-06	KDM1A	+	FALSE
chr6	42856170	A	G	0.00141	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	132049915	A	G	0.00226	LOC440910	+	FALSE	AluSg4	SINE,Alu
chr1	10517512	T	C	0.00514		.	FALSE	AluSx1	SINE,Alu
chr1	40307166	G	A	0.00026	TRIT1	-	FALSE
chr1	6283548	A	G	0.00286	ICMT	-	FALSE
chr1	52816691	T	C	0.00353	CC2D1B	-	TRUE	AluSx1	SINE,Alu
chr1	117530273	A	G	0.00270	PTGFRN	+	FALSE
chr1	53291425	A	G	0.00517	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	46075779	A	G	0.00640	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	16958064	A	G	0.00240		.	FALSE
chr1	33071096	A	G	0.00139	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr4	7762313	C	G	5.86540E-10	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	36527402	A	T	0.00278		.	FALSE
chr12	64844149	A	G	0.00456		.	FALSE	AluJr4	SINE,Alu
chr15	23313171	A	G	0.00257	HERC2P2	-	FALSE
chr2	37327702	T	C	0.00119		.	FALSE
chr2	54014303	A	G	0.00901	GPR75-ASB3,ERLEC1	+,-	FALSE
chr1	145512014	A	G	0.00144	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr10	22825288	G	A	0.00051	PIP4K2A	-	FALSE
chr2	39009427	A	G	1.04745E-05		.	FALSE	AluSx3	SINE,Alu
chr7	100031496	T	A	0.00119	MEPCE	+	FALSE
chr7	44917351	T	C	0.00338	PURB	-	TRUE	AluSz	SINE,Alu
chr2	58316814	A	G	0.00257	VRK2	+	FALSE
chr6	13788342	T	C	0.00454	MCUR1	-	TRUE	AluSx	SINE,Alu
chr2	27293349	C	T	0.00503	AGBL5,OST4	+,-	FALSE
chr15	90627429	T	C	0.00013	IDH2	-	FALSE
chr2	208466270	A	G	0.00713	CREB1,METTL21A	+,-	FALSE
chr3	41281388	T	G	0.00720	CTNNB1	+	FALSE
chrX	77083941	T	C	0.00271	MAGT1	-	TRUE	AluSz	SINE,Alu
chr2	99812978	A	G	0.00475	MRPL30	+	TRUE	AluJb	SINE,Alu
chr9	89627066	A	G	0.00588	LOC440173	-	FALSE
chr3	48787011	T	C	0.00040	PRKAR2A	-	TRUE	AluSx3	SINE,Alu
chr3	66024384	G	C	0.00096	MAGI1	-	FALSE
chr2	91805833	A	G	1.63980E-13		.	FALSE	MLT1H1	SINE,Alu
chr6	143661166	A	C	0.00536	AIG1	+	FALSE
chr1	9162223	T	C	0.00778		.	FALSE	AluSx	SINE,Alu
chr16	19725719	C	T	0.00471	KNOP1	-	FALSE
chr6	44222158	T	A	0.00781	SLC35B2	-	FALSE
chr2	44459528	G	A	0.00126	PPM1B	+	FALSE
chr1	145354360	A	C	0.00761	NBPF20,NBPF10	+	FALSE
chr3	129152089	G	A	0.00154	MBD4	-	FALSE
chr7	158590740	A	T	0.00211	ESYT2	-	FALSE
chr1	167511256	T	C	0.00838	CREG1	-	FALSE
chr5	134670071	A	T	0.00405	C5orf66,H2AFY	+,-	FALSE
chr1	11979814	G	A	0.00697	KIAA2013	-	FALSE
chr2	1636053	A	G	0.00189	PXDN	-	FALSE
chr9	137330711	T	A	0.00194	RXRA	+	FALSE	(GCTG)n	SINE,Alu
chr1	227847344	T	C	0.00205	ZNF678	+	FALSE
chr1	205320469	G	A	0.00109	KLHDC8A	-	FALSE
chr2	178482698	A	G	0.00408	TTC30A	-	FALSE
chr3	10193732	A	G	0.00472	VHL	+	TRUE	AluJr	SINE,Alu
chr3	14986138	T	C	1.80576E-11	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr15	65442678	T	C	2.30704E-07	CLPX	-	TRUE	AluSg4	SINE,Alu
chr12	32532505	G	A	0.00385		.	FALSE
chr2	102508654	T	G	0.00010	MAP4K4	+	FALSE
chr2	34080819	A	C	0.00815	LINC01317	+	FALSE	MSTD	SINE,Alu
chr1	109856378	C	A	0.00804	SORT1	-	FALSE
chr1	120165040	T	C	0.00107	ZNF697	-	FALSE
chr3	9833986	C	T	2.34147E-05	TADA3	-	FALSE
chr1	226333556	C	A	0.00977	ACBD3	-	FALSE	(CAAAA)n	SINE,Alu
chr3	15113655	T	C	0.00025	RBSN	-	TRUE	AluSz6	SINE,Alu
chr1	32688036	A	T	0.00265	EIF3I	+	FALSE
chr2	217366590	A	G	0.00013		.	FALSE	AluSz	SINE,Alu
chr1	204524842	A	G	0.00044	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	53289686	A	G	0.00063	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr6	13790822	T	C	0.00885	MCUR1	-	TRUE	AluSx1	SINE,Alu
chr1	205684067	T	C	0.00499	NUCKS1	-	FALSE
chr19	18476176	A	G	0.00452	PGPEP1	+	TRUE	AluJb	SINE,Alu
chr1	87328403	A	T	0.00946	SEP15	-	FALSE
chr1	19585772	G	A	2.66054E-05	MRTO4	+	FALSE	AluSc8	SINE,Alu
chr17	37006214	T	C	0.00706		.	FALSE	AluSx	SINE,Alu
chr5	149781426	A	G	0.00977	CD74	-	FALSE
chr1	10519951	T	C	0.00499		.	FALSE	AluJr	SINE,Alu
chr1	6582498	T	C	0.00403	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	145281408	C	T	0.00220	NBPF20,NOTCH2NL	+	FALSE
chr21	34729931	A	G	0.00040	IFNAR1	+	TRUE	AluSg7	SINE,Alu
chr1	39470995	A	C	0.00036	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr2	96850885	T	C	0.00699	STARD7	-	FALSE
chr1	23636275	G	T	0.00258	HNRNPR	-	FALSE
chr9	125887702	C	T	0.00019	STRBP	-	FALSE
chr1	16892135	G	A	0.00508	NBPF1	-	FALSE
chr1	109747437	A	G	0.00104	KIAA1324	+	TRUE	AluJr4	SINE,Alu
chr10	75009591	T	C	8.39163E-08	DNAJC9-AS1,MRPS16	+,-	FALSE	AluSc	SINE,Alu
chr1	931807	G	A	0.00578		.	FALSE
chr7	75958147	T	A	0.00917	YWHAG	-	FALSE
chr2	86252112	T	C	0.00233	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr5	125961623	A	G	4.58304E-06	PHAX	+	TRUE	AluSz6	SINE,Alu
chr3	121435624	C	T	0.00063	GOLGB1	-	FALSE
chr12	51325237	A	G	5.73531E-05	METTL7A	+	TRUE	AluSq2	SINE,Alu
chr1	47844500	T	G	0.00169	CMPK1	+	FALSE
chr1	10520072	T	C	0.00529		.	FALSE	AluSx	SINE,Alu
chr1	138156	G	T	0.00413	LOC729737	-	FALSE
chr1	231154935	C	T	0.00093	FAM89A	-	FALSE
chr1	118502731	T	G	0.00155	WDR3,SPAG17	+,-	FALSE
chr4	177252238	A	G	9.63526E-05	SPCS3	+	TRUE
chr18	10691357	G	A	0.00082	PIEZO2	-	FALSE
chr16	89623619	A	G	0.00275	SPG7	+	FALSE
chr7	100278998	C	A	0.00022	GIGYF1	-	FALSE	(A)n	SINE,Alu
chr9	89627063	A	G	0.00614	LOC440173	-	FALSE
chr1	67874859	T	C	0.00027	SERBP1	-	TRUE	AluSx	SINE,Alu
chr5	41917697	A	T	0.00051	C5orf51	+	FALSE
chr5	53840199	G	T	0.00857	SNX18	+	FALSE
chr1	36067821	T	C	1.12344E-05	PSMB2	-	TRUE	AluSz	SINE,Alu
chr8	91637754	A	T	0.00297	TMEM64	-	FALSE
chr1	27108245	T	C	0.00265	ARID1A	+	FALSE
chr1	33148214	A	G	0.00295	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr22	44890573	T	C	1.87764E-05	LDOC1L	-	FALSE
chr1	183218871	G	T	0.00025	NMNAT2	-	FALSE
chr2	128602974	A	T	4.23982E-05		.	FALSE	AluSp	SINE,Alu
chr2	69685864	A	C	0.00610	AAK1	-	FALSE	(CA)n	SINE,Alu
chr1	3730332	T	C	6.29937E-05	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	144931101	G	A	0.00358	NBPF20,PDE4DIP	+,-	FALSE
chr1	3729217	T	C	0.00030	CEP104	-	TRUE	AluSx3	SINE,Alu
chr8	48890109	A	G	0.00750	MCM4	+	TRUE	AluJb	SINE,Alu
chr5	180682612	A	T	0.00235	CTC-338M12.4	+	FALSE
chr5	93018903	T	A	5.97109E-08	FAM172A	-	FALSE	(TCA)n	SINE,Alu
chr9	14810	C	G	0.00709	WASH1	-	FALSE
chr1	153617973	A	G	4.00129E-07	CHTOP	+	FALSE
chr17	65335394	T	C	5.10125E-06	PSMD12	-	TRUE	AluSx	SINE,Alu
chr2	196999052	C	G	0.00358	STK17B	-	FALSE	MER1B	SINE,Alu
chr8	98739208	A	G	0.00686	MTDH	+	TRUE	AluSg4	SINE,Alu
chr1	229762054	T	A	0.00535	URB2	+	FALSE
chr1	19411087	C	T	0.00226	UBR4	-	FALSE
chr8	30535953	T	C	7.17768E-07	GSR	-	TRUE	AluJr	SINE,Alu
chr1	20976211	T	C	0.00833	PINK1,PINK1-AS	+,-	FALSE	AluSz	SINE,Alu
chr16	24807247	G	A	0.00417	TNRC6A	+	FALSE
chr1	6282224	T	C	0.00785	ICMT	-	TRUE	AluSz	SINE,Alu
chr3	40503559	C	G	0.00018	RPL14	+	FALSE
chr1	93602673	C	T	0.00252	MTF2	+	FALSE
chr1	160967855	T	C	0.00050	F11R	-	TRUE	AluSp	SINE,Alu
chr3	45960558	C	T	6.37727E-08	FYCO1	-	FALSE
chr5	112312528	T	C	0.00827	DCP2	+	FALSE
chr1	110566210	T	A	0.00832	AHCYL1	+	FALSE
chr1	44447004	G	A	0.00768	B4GALT2	+	FALSE	(CAG)n	SINE,Alu
chr7	55433880	G	C	0.00778	LANCL2	+	FALSE
chr3	170113718	T	C	0.00316	SKIL	+	FALSE
chr2	46852033	A	G	0.00543	CRIPT	+	FALSE
chr3	52288956	A	T	0.00042	WDR82	-	FALSE
chr3	15114492	T	C	0.00073	RBSN	-	TRUE	AluY	SINE,Alu
chr1	36067752	T	C	0.00031	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	22109370	G	A	0.00371	USP48	-	FALSE
chr5	125961166	A	G	0.00732	PHAX	+	TRUE	AluSz	SINE,Alu
chr16	75479891	T	C	9.48885E-06	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr1	567557	A	G	0.00649		.	FALSE
chr15	83659319	A	T	0.00130	FAM103A1,C15orf40	+,-	FALSE
chr1	47142538	G	A	7.23026E-06	EFCAB14-AS1,EFCAB14	+,-	FALSE
chr17	73940094	T	C	0.00557	ACOX1	-	TRUE	AluJb	SINE,Alu
chr15	39879717	G	A	0.00162	THBS1	+	FALSE
chr1	36068237	T	C	0.00075	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	32508534	A	G	0.00666	KHDRBS1	+	FALSE
chr2	85547772	G	C	0.00871	TGOLN2	-	FALSE
chr7	36447346	G	A	0.00419	ANLN	+	FALSE
chrX	77083915	T	C	0.00075	MAGT1	-	TRUE	AluSz	SINE,Alu
chr1	153599390	T	C	0.00135	S100A13	-	FALSE
chr1	148004548	T	C	0.00110	NBPF8	-	FALSE
chr8	100890376	G	T	0.00920	COX6C	-	FALSE
chr2	206987725	T	C	0.00625		.	FALSE	AluJb	SINE,Alu
chr1	10517527	T	C	8.32015E-05		.	FALSE	AluSx1	SINE,Alu
chr5	77655392	T	C	0.00080	SCAMP1-AS1	-	TRUE	AluSx4	SINE,Alu
chr4	39552148	T	C	0.00011	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr2	206981874	T	C	0.00060		.	FALSE	AluJb	SINE,Alu
chr11	45827050	G	C	0.00045	SLC35C1	+	FALSE
chr19	200571	T	C	0.00079	LINC01002	-	FALSE
chr7	86816663	A	G	0.00103	DMTF1	+	TRUE	AluJr	SINE,Alu
chr3	197612267	A	G	0.00341		.	FALSE	AluSp	SINE,Alu
chr14	103372464	C	A	0.00577	TRAF3	+	FALSE	(AC)n	SINE,Alu
chr7	105162638	G	C	0.00155	PUS7	-	FALSE
chr6	42856954	A	G	0.00037	RPL7L1	+	TRUE	AluSp	SINE,Alu
chr1	10517527	T	C	0.00304		.	FALSE	AluSx1	SINE,Alu
chr1	92862862	A	G	0.00024		.	FALSE	AluJr	SINE,Alu
chr2	86250101	T	C	0.00038	LOC90784	-	TRUE	AluSx	SINE,Alu
chr17	65335459	T	C	5.16289E-08	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	16912138	A	G	0.00197	NBPF1	-	FALSE
chrX	77083548	T	C	0.00205	MAGT1	-	TRUE	AluSz6	SINE,Alu
chr2	99812843	A	G	0.00966	MRPL30	+	TRUE	AluJb	SINE,Alu
chr1	89447839	C	G	0.00589	KYAT3,RBMXL1	-	FALSE
chr6	52860743	T	G	1.89710E-05		.	FALSE	7SK	SINE,Alu
chr1	204525649	A	G	0.00191	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	145688664	A	T	0.00081	NBPF20,NBPF10,RNF115	+	FALSE
chr1	32799510	T	G	0.00048	MARCKSL1	-	FALSE
chr1	6282237	T	C	0.00372	ICMT	-	TRUE	AluSz	SINE,Alu
chr2	17897488	T	C	0.00430	SMC6	-	FALSE
chr4	40138676	A	G	0.00157	N4BP2	+	FALSE
chr11	68523337	T	C	0.00016	CPT1A	-	TRUE	AluSq	SINE,Alu
chr8	30643547	T	A	0.00748	PPP2CB	-	FALSE
chr1	6354955	G	A	0.00090	ACOT7	-	FALSE
chr1	220231959	T	C	2.75997E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr2	37331736	T	C	0.00165		.	FALSE	AluJb	SINE,Alu
chr3	183899832	C	T	1.28780E-06	AP2M1	+	FALSE
chr3	45721891	A	G	0.00163	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr7	295960	T	A	2.17882E-07	FAM20C	+	FALSE
chr18	19445881	T	A	0.00224	MIB1	+	FALSE
chr1	200941185	T	G	0.00729	KIF21B	-	FALSE
chr6	31626580	G	A	0.00291		.	FALSE
chr4	10443060	T	G	0.00167	ZNF518B	-	FALSE
chr6	13788387	T	C	0.00240	MCUR1	-	TRUE	AluSx	SINE,Alu
chr8	17087341	C	A	0.00197	CNOT7	-	FALSE
chr20	25427865	A	G	0.00018	GINS1	+	FALSE	AluSz	SINE,Alu
chr4	17626174	T	A	0.00534	MED28	+	FALSE
chr1	86049362	C	A	0.00140	CYR61	+	FALSE
chr3	141667690	T	C	0.00018	TFDP2	-	TRUE	AluY	SINE,Alu
chr1	9329289	C	T	0.00303	H6PD	+	FALSE
chr1	168220489	A	G	0.00319		.	FALSE	AluSz6	SINE,Alu
chr1	21810587	A	G	0.00563	NBPF3	+	FALSE
chr1	6283296	T	C	0.00122	ICMT	-	TRUE	AluSx3	SINE,Alu
chr3	120113286	C	T	1.47726E-06	FSTL1	-	FALSE
chr8	133837579	G	A	0.00019	PHF20L1	+	FALSE	A-rich	SINE,Alu
chr3	98515569	C	T	3.10862E-15	DCBLD2	-	FALSE
chr2	217366541	A	G	0.00071		.	FALSE	AluSz	SINE,Alu
chr10	121588038	A	C	0.00100	INPP5F	+	FALSE
chr1	46075168	C	A	0.00155	NASP	+	FALSE	A-rich	SINE,Alu
chr3	179117270	T	C	0.00478	GNB4	-	TRUE	AluSz	SINE,Alu
chr1	16890320	T	C	0.00045	NBPF1	-	FALSE
chr14	63841402	A	C	0.00692	PPP2R5E	-	FALSE
chr1	150337289	G	T	0.00298	RPRD2	+	FALSE
chr1	214527252	G	A	0.00181	PTPN14	-	FALSE	MADE2	SINE,Alu
chr3	196046746	T	C	0.00513	TM4SF19-TCTEX1D2,TM4SF19-AS1	+,-	FALSE	AluSc5	SINE,Alu
chr3	58141791	A	G	0.00696	FLNB	+	FALSE
chr1	204526710	A	G	0.00082	MDM4	+	TRUE	AluSx	SINE,Alu
chr1	16932931	C	A	0.00169	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr1	28824041	T	A	0.00627	PHACTR4	+	FALSE	AluSx	SINE,Alu
chr1	10520669	T	C	0.00963	DFFA	-	FALSE	AluSc8	SINE,Alu
chr2	55462747	T	A	0.00163	RPS27A	+	FALSE
chr1	113455427	T	A	0.00814	SLC16A1	-	FALSE
chr1	25894464	G	A	0.00527	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr1	9328243	A	G	0.00616	H6PD	+	TRUE	AluJr	SINE,Alu
chr4	129795659	A	T	0.00459	JADE1	+	FALSE
chr5	81571876	A	T	0.00092	RPS23	-	FALSE
chr14	53243434	T	C	5.94655E-10	GNPNAT1	-	TRUE	AluSx3	SINE,Alu
chr19	19792403	A	G	1.20818E-05	ZNF101	+	TRUE	AluJb	SINE,Alu
chr10	98281496	T	C	0.00509	TM9SF3	-	FALSE
chr11	31452788	A	G	0.00239	DNAJC24	+	TRUE	AluSx1	SINE,Alu
chr3	40578941	A	G	0.00293	ZNF621	+	TRUE	AluJr	SINE,Alu
chr2	68402360	A	G	0.00309	PNO1	+	FALSE
chr1	16913612	G	A	0.00581	NBPF1	-	FALSE
chr1	39470978	T	A	0.00378	AKIRIN1	+	FALSE	AluSx1	SINE,Alu
chr1	108113839	T	C	0.00027	VAV3	-	FALSE
chr1	25688276	A	G	0.00015	TMEM50A	+	FALSE
chr1	988503	A	T	0.00141	AGRN	+	FALSE
chr7	29961939	G	T	1.47033E-05	SCRN1	-	FALSE
chr1	53289759	A	G	0.00582	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr15	91044380	G	C	0.00453	IQGAP1	+	FALSE
chr19	29703961	A	C	0.00376	UQCRFS1	-	FALSE
chr7	17384358	A	G	7.93091E-07	AHR	+	TRUE	AluSx	SINE,Alu
chr1	19542239	T	C	0.00032	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr19	49619561	T	C	2.39173E-05	LIN7B	+	FALSE
chr14	53242630	T	C	0.00056	GNPNAT1	-	TRUE	AluJr	SINE,Alu
chr2	7182946	T	C	0.00748	RNF144A	+	FALSE
chr4	57327058	A	G	0.00129	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	89447839	C	G	0.00488	KYAT3,RBMXL1	-	FALSE
chr1	1252652	T	C	0.00219	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr2	91847976	C	T	0.00010		.	FALSE	TAR1	SINE,Alu
chr8	100890423	C	A	0.00113	COX6C	-	FALSE
chr1	161160459	T	C	0.00270	ADAMTS4	-	FALSE	(CA)n	SINE,Alu
chr1	19542310	T	C	0.00582	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr5	32586597	G	C	0.00970	SUB1	+	FALSE
chr2	109301115	T	A	0.00150	LIMS1	+	FALSE
chr3	14986110	T	C	0.00632	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	10517653	T	C	0.00256		.	FALSE	AluSx1	SINE,Alu
chr3	113351702	A	G	0.00042		.	FALSE	7SLRNA	SINE,Alu
chr3	42643425	G	A	0.00482	NKTR	+	FALSE	L2a	SINE,Alu
chr19	45406537	T	C	0.00278	TOMM40	+	FALSE
chr1	231154921	C	T	0.00773	FAM89A	-	FALSE	(T)n	SINE,Alu
chr1	33148740	A	G	0.00210	SYNC,RBBP4	+,-	FALSE	AluSc	SINE,Alu
chr1	16912014	A	C	0.00702	NBPF1	-	FALSE
chr1	85785548	C	T	0.00220	DDAH1	-	FALSE
chr1	100659985	T	C	0.00600	DBT	-	FALSE	AluSx3	SINE,Alu
chr1	180167090	C	T	0.00607	QSOX1	+	FALSE
chr5	52389815	A	G	0.00486	ITGA2	+	TRUE
chr5	131715011	A	G	0.00761	SLC22A5	+	FALSE
chr1	21808159	G	A	9.34000E-05	NBPF3	+	FALSE
chr1	9162224	T	C	0.00523		.	FALSE	AluSx	SINE,Alu
chr2	20097874	T	C	0.00769	TTC32	-	FALSE
chr3	100119819	C	T	0.00850	TOMM70	-	FALSE
chr2	61277775	A	G	0.00640	PEX13	+	TRUE	AluY	SINE,Alu
chr1	11141187	C	G	0.00819	EXOSC10	-	FALSE
chr1	144596446	A	G	0.00124	NBPF20	+	TRUE	AluJb	SINE,Alu
chr1	10517314	T	C	0.00286		.	FALSE	AluJr	SINE,Alu
chr3	14986137	T	C	1.37684E-08	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	202993614	G	T	0.00990	TMEM183A	+	FALSE	(T)n	SINE,Alu
chrX	118672641	T	C	0.00027	CXorf56	-	TRUE	AluSx	SINE,Alu
chr16	81064494	A	G	8.13539E-06	CENPN	+	TRUE	AluSg	SINE,Alu
chr15	52840681	C	T	0.00789	ARPP19	-	FALSE	AluSx1	SINE,Alu
chr1	15899345	T	C	0.00300	AGMAT	-	TRUE	AluSx3	SINE,Alu
chr6	42047426	A	G	0.00676	TAF8	+	TRUE	AluSz6	SINE,Alu
chr3	23958355	C	T	0.00997	NKIRAS1,RPL15	+,-	FALSE
chr8	11701297	T	C	0.00288	CTSB	-	TRUE	AluSx1	SINE,Alu
chr5	49692633	T	G	0.00808	EMB	-	FALSE
chr1	3545191	C	T	0.00165	TPRG1L	+	FALSE
chr1	200558363	T	C	1.35174E-05	KIF14	-	FALSE
chr8	71550832	T	C	0.00234	LACTB2-AS1,LACTB2	+,-	FALSE
chr3	137787047	C	T	0.00735	DZIP1L	-	FALSE
chr8	103841636	T	C	2.19081E-06	AZIN1	-	TRUE
chr15	44055281	T	C	0.00580	PDIA3	+	FALSE
chr4	140310370	T	C	0.00335	NAA15	+	FALSE	(T)n	SINE,Alu
chr1	38001685	T	C	0.00050	SNIP1	-	TRUE	AluSx	SINE,Alu
chr7	44917278	T	C	0.00461	PURB	-	TRUE	AluSz	SINE,Alu
chr1	145689271	A	G	0.00250	NBPF20,NBPF10	+	FALSE
chr6	133135886	A	G	0.00629	RPS12	+	FALSE
chr1	19543352	T	C	0.00087	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chrX	54587290	A	G	0.00504	GNL3L	+	TRUE	AluSq2	SINE,Alu
chr1	90496700	A	G	0.00486	ZNF326	+	FALSE
chr1	27202845	T	C	0.00034		.	FALSE	AluSq2	SINE,Alu
chr12	133334739	T	C	0.00388	ANKLE2	-	TRUE	AluSz	SINE,Alu
chr1	17730	C	A	0.00256	WASH7P	-	FALSE
chr1	26143731	A	G	0.00337	SEPN1	+	FALSE	AluSx	SINE,Alu
chr7	64435685	A	T	0.00239	ZNF117	-	FALSE
chr1	16890598	T	A	0.00428	NBPF1	-	FALSE

RBP	CKAP4
Knock-Method	shRNA
RBP Family	Non-canonical_RBP
Biosample Name	HepG2
Tissue Type	Liver
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	ENCODE
Profile ID	ENCSR269SJB
Platform	HiSeq
Pubmed ID	32252787

CKAP4 - Target Gene Network