Dataset Overview
RBP
CKAP4
Knock-Method
shRNA
RBP Family
Non-canonical_RBP
Biosample Name
HepG2
Tissue Type
Liver
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
ENCODE
Profile ID
ENCSR269SJB
Platform
HiSeq
Pubmed ID
32252787
CKAP4 - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of CKAP4
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A1BG
10.57
16.08
0.57963
1.67287E-09
4.87510E-09
A1CF
32.44
30.08
-0.14560
0.00290
0.00468
A2M
2405.22
2630.25
0.30983
1.34695E-11
4.57411E-11
AACS
11.23
10.86
-0.21692
0.00041
0.00073
AAGAB
8.11
12.84
0.47556
3.11023E-11
1.02901E-10
AAK1
3.76
4.21
0.21069
0.02514
0.03562
AAMP
92.31
111.89
0.47342
8.80735E-19
4.58231E-18
AAR2
13.96
27.31
0.81224
1.00030E-44
1.44334E-43
AARSD1
12.23
20.03
0.44444
3.29743E-06
7.30077E-06
AASDHPPT
17.61
11.98
-0.23420
0.00013
0.00025
Showing 1 to 10 of 10,067 entries
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Function Analysis of Target Genes of CKAP4
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABCC2
101601723_101601850_101594136_101594292_101603555_101603657
0.00267
-0.257
DataSet_01_97
View details
ACSL3
223752547_223752606_223725651_223725976_223765391_223765498
0.00062
-0.068
DataSet_01_97
View details
ACSL4
108934231_108934360_108926364_108926601_108939372_108939425
0.00559
0.208
DataSet_01_97
View details
ACTR1A
104241593_104241655_104240888_104240929_104242767_104242860
0.00409
-0.121
DataSet_01_97
View details
ADK
76285013_76285184_76158228_76158337_76349039_76349075
0.00566
-0.087
DataSet_01_97
View details
AFP
74310709_74310839_74309063_74309161_74315051_74315184
0.00000
0.017
DataSet_01_97
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AFP
74313178_74313393_74309067_74309161_74315051_74315184
0.00000
0.016
DataSet_01_97
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AGPS
178306822_178306963_178305692_178305764_178307134_178307214
0.00189
0.116
DataSet_01_97
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AHSG
186336324_186336426_186334972_186335139_186338374_186339089
0.00047
-0.01
DataSet_01_97
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AHSG
186337645_186337729_186334975_186335139_186338374_186339089
0.00088
-0.008
DataSet_01_97
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Showing 1 to 10 of 252 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
A1CF
52587890_52588055_52595833_52596072_52580311_52580409
0.00224
0.26
DataSet_01_97
View details
A2M
9229941_9230016_9230296_9230453_9229351_9229532
0.00000
-0.211
DataSet_01_97
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ABCC2
101595900_101596047_101601723_101601850_101594136_101594292
0.00156
0.045
DataSet_01_97
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ABI1
27044583_27044670_27047990_27048167_27040526_27040712
0.00537
-0.19
DataSet_01_97
View details
ABI1
27044583_27044670_27048014_27048167_27040526_27040712
0.00751
-0.173
DataSet_01_97
View details
ABLIM1
116207638_116207779_116211382_116211430_116205070_116205162
0.00002
-0.198
DataSet_01_97
View details
ACADM
76216135_76216231_76226806_76227055_76215103_76215244
0.00005
0.169
DataSet_01_97
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ACLY
40049285_40049427_40054001_40054092_40048531_40048700
0.00003
0.177
DataSet_01_97
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ACTN4
39200896_39200982_39201915_39202001_39200034_39200116
0.00000
0.046
DataSet_01_97
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AHSG
186334975_186335164_186336324_186336426_186334231_186334316
0.00080
0.083
DataSet_01_97
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Showing 1 to 10 of 155 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ACAT2
160189542_160189660_160189542_160189582_160196201_160196339
0.00990
-0.023
DataSet_01_97
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ANAPC11
79849614_79849739_79849614_79849729_79852342_79852462
0.00410
-0.333
DataSet_01_97
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ARFGEF2
47585683_47585868_47585683_47585814_47587656_47587891
0.00865
0.061
DataSet_01_97
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ATXN2L
28847253_28847806_28847253_28847443_28848048_28848558
0.00668
0.139
DataSet_01_97
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BABAM1
17387332_17387532_17387332_17387433_17387631_17387718
0.00673
0.117
DataSet_01_97
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BAIAP2
79027467_79027591_79027467_79027539_79031680_79031767
0.00328
-0.216
DataSet_01_97
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BPIFB2
31606510_31606716_31606510_31606628_31607385_31607556
0.00000
0.276
DataSet_01_97
View details
C14orf159
91671049_91671211_91671049_91671169_91681748_91682137
0.00839
0.186
DataSet_01_97
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CBX3
26241384_26241633_26241384_26241446_26242590_26242642
0.00226
0.026
DataSet_01_97
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CFB
31915732_31915971_31915732_31915858_31916150_31916289
0.00561
0.033
DataSet_01_97
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Showing 1 to 10 of 33 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
ABLIM1
116207638_116207785_116207638_116207779_116211382_116211430
0.00010
-0.201
DataSet_01_97
View details
ACSL4
108926364_108926781_108926364_108926601_108939372_108939425
0.00936
0.169
DataSet_01_97
View details
B4GALT3
161146223_161146896_161146223_161146369_161147212_161147269
0.00092
0.115
DataSet_01_97
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CISD1
60036876_60037082_60036957_60037082_60028817_60029064
0.00681
-0.238
DataSet_01_97
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CLK2
155239278_155239507_155239278_155239504_155240598_155240768
0.00793
0.125
DataSet_01_97
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CPNE1
34214488_34214725_34214488_34214722_34215201_34215335
0.00172
-0.121
DataSet_01_97
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CPNE1
34214488_34214748_34214488_34214722_34215201_34215335
0.00872
-0.105
DataSet_01_97
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CPNE1
34214488_34214748_34214488_34214725_34215201_34215335
0.00136
0.05
DataSet_01_97
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DDX39B
31508098_31508441_31508098_31508311_31509726_31510225
0.00137
0.087
DataSet_01_97
View details
DHPS
12786830_12787039_12786830_12786956_12787921_12788025
0.00121
0.152
DataSet_01_97
View details
Showing 1 to 10 of 37 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AAAS
53708081_53708633_53708081_53708225_53708534_53708633
0.00592
0.053
DataSet_01_97
View details
AC093838.4
132258753_132258992_132258753_132258806_132258930_132258992
0.00230
0.114
DataSet_01_97
View details
ACADVL
7127131_7127388_7127131_7127194_7127286_7127388
0.00009
0.076
DataSet_01_97
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ACSL5
114170220_114170463_114170220_114170253_114170341_114170463
0.00529
0.112
DataSet_01_97
View details
AKT1
105237081_105238789_105237081_105237184_105238701_105238789
0.00024
0.067
DataSet_01_97
View details
ANAPC5
121783641_121784808_121783641_121783834_121784698_121784808
0.00077
0.127
DataSet_01_97
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AP1G2
24032924_24033430_24032924_24033065_24033254_24033430
0.00755
-0.101
DataSet_01_97
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AP5Z1
4829462_4830222_4829462_4829560_4830089_4830222
0.00242
0.257
DataSet_01_97
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ATF4
39916568_39917676_39916568_39916756_39917358_39917676
0.00000
0.081
DataSet_01_97
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ATXN2L
28846402_28846637_28846402_28846508_28846598_28846637
0.00000
0.037
DataSet_01_97
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Differential Variants in RNA (DVRs)
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Search:
Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
38174987
T
C
0.00032
CDCA8
+
FALSE
chr1
109746825
A
G
0.00427
KIAA1324
+
TRUE
AluJb
SINE,Alu
chr1
40537947
A
C
0.00295
CAP1
+
FALSE
chr1
16889566
T
C
0.00305
NBPF1
-
TRUE
chr1
113212976
C
T
0.00043
CAPZA1
+
FALSE
chr1
65694080
C
T
0.00442
AK4
+
FALSE
(TCCC)n
SINE,Alu
chr1
156692049
A
T
6.25184E-05
ISG20L2
-
FALSE
chr1
20978457
T
C
0.00036
PINK1-AS,DDOST
-
TRUE
AluY
SINE,Alu
chr1
138980
G
T
0.00608
LOC729737
-
FALSE
chr1
16892279
C
A
0.00326
NBPF1
-
FALSE
Showing 1 to 10 of 396 entries
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression