RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr1	201846630	C	A	7.51318E-05	IPO9	+	FALSE	(CA)n	SINE,Alu
chr14	53242417	T	C	0.00423	GNPNAT1	-	TRUE	AluJo	SINE,Alu
chr1	29631909	A	G	0.00029	PTPRU	+	FALSE
chr1	59122059	G	A	0.00476	MYSM1	-	FALSE
chr1	155161702	G	C	0.00020	MUC1	-	FALSE
chr1	16890130	A	C	0.00412	NBPF1	-	FALSE
chr1	175914284	A	G	0.00036	RFWD2	-	FALSE
chr1	19071752	T	C	0.00503	PAX7	+	FALSE
chr1	16133987	T	C	0.00830	UQCRHL	-	FALSE
chr7	2473753	C	T	0.00806	CHST12	+	FALSE	(CCGC)n	SINE,Alu
chr3	37317605	A	G	9.02711E-05	GOLGA4	+	FALSE
chr1	19542458	T	C	6.76498E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	6582498	T	C	0.00403	NOL9	-	TRUE	AluSx1	SINE,Alu
chr1	32631809	C	T	2.91083E-08	KPNA6	+	FALSE
chr4	17802772	G	T	0.00328	DCAF16	-	FALSE	AluSz	SINE,Alu
chr16	10624905	T	C	1.13117E-09	EMP2	-	FALSE	AluSx3	SINE,Alu
chr3	44790624	T	C	0.00150	KIAA1143	-	TRUE	AluY	SINE,Alu
chr3	15112631	A	G	0.00019	RBSN	-	FALSE
chr3	196557274	C	T	0.00285	PAK2	+	FALSE
chr4	2940265	T	C	4.71601E-06	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr19	9761591	T	C	0.00516	ZNF562	-	TRUE	AluSp	SINE,Alu
chr2	206981832	T	C	0.00251		.	FALSE	AluJb	SINE,Alu
chr4	2940477	T	C	1.61307E-05	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr5	180663939	C	A	0.00190	RACK1	-	FALSE
chr1	28824065	C	T	0.00345	PHACTR4	+	FALSE
chr1	68940887	T	G	0.00293	DEPDC1	-	FALSE	MIR	SINE,Alu
chr1	204520250	A	G	0.00706	MDM4	+	TRUE	AluJb	SINE,Alu
chr1	109747415	A	G	0.00549	KIAA1324	+	TRUE	AluJr4	SINE,Alu
chr3	182614493	T	C	0.00036	ATP11B	+	FALSE
chr1	24999468	G	T	0.00075	SRRM1	+	FALSE	(T)n	SINE,Alu
chr3	44791062	T	C	0.00035	KIAA1143	-	FALSE
chr3	183900836	G	A	2.54977E-05	AP2M1	+	FALSE
chr1	172411496	A	G	0.00361	C1orf105,PIGC	+,-	FALSE
chr1	10521238	T	C	0.00597	DFFA	-	TRUE	AluY	SINE,Alu
chr16	75479250	T	C	0.00568	TMEM170A	-	TRUE	AluJb	SINE,Alu
chr4	10076959	C	G	6.37978E-10	WDR1	-	FALSE
chr1	145273345	T	C	0.00190	NBPF20,NOTCH2NL	+	FALSE
chr3	56703746	A	C	0.00027	FAM208A	-	FALSE
chr5	137891109	C	G	0.00031	HSPA9	-	FALSE
chr12	123346990	G	T	0.00055	HIP1R	+	FALSE
chr1	567489	T	C	0.00119		.	FALSE
chr1	46075715	A	G	0.00401	NASP	+	TRUE	AluSx4	SINE,Alu
chr7	66421684	T	G	0.00042	TMEM248	+	FALSE	AluJr	SINE,Alu
chr6	52860743	T	G	1.01575E-05		.	FALSE	7SK	SINE,Alu
chr17	17971644	G	T	0.00154	GID4	+	FALSE
chr2	206983267	T	C	0.00133		.	FALSE	AluJb	SINE,Alu
chr3	141668758	T	C	2.84489E-05	TFDP2	-	TRUE	AluSz	SINE,Alu
chr1	53679610	G	A	0.00119	CPT2	+	FALSE	AluSz	SINE,Alu
chr7	75958129	T	A	0.00162	YWHAG	-	FALSE
chr5	17276080	A	C	0.00298	BASP1	+	FALSE	(TC)n	SINE,Alu
chr1	19543456	T	C	0.00451	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	214529320	T	G	0.00365	PTPN14	-	FALSE	AluJb	SINE,Alu
chr3	15115270	G	T	0.00177	RBSN	-	FALSE
chr2	227600369	A	G	0.00577	IRS1	-	FALSE
chr1	19665557	A	C	0.00365	CAPZB	-	FALSE
chr1	144955288	A	G	0.00574	NBPF20,PDE4DIP	+,-	FALSE
chr1	10518821	T	C	0.00913		.	FALSE	AluSx1	SINE,Alu
chr2	37330611	T	C	0.00835		.	FALSE	AluSq2	SINE,Alu
chr1	150281090	A	G	3.10555E-05	MRPS21	+	TRUE	AluSz	SINE,Alu
chr5	79923292	C	G	0.00305	DHFR	-	FALSE	AluJr	SINE,Alu
chr4	1305799	C	T	0.00730	MAEA	+	FALSE
chr4	169847647	A	T	0.00328	PALLD	+	FALSE
chr2	233446265	T	C	0.00177	EIF4E2	+	FALSE
chr1	53291435	A	G	0.00044	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr12	990912	A	C	0.00244	WNK1	+	FALSE
chr2	101893247	C	A	0.00237	RNF149	-	FALSE	(A)n	SINE,Alu
chr1	19653870	T	C	0.00477	PQLC2	+	FALSE
chr1	65690461	G	A	0.00115	AK4	+	FALSE
chr2	191366707	A	G	0.00900	MFSD6	+	FALSE
chr1	10519064	T	C	0.00012		.	FALSE	AluSx3	SINE,Alu
chr1	67895926	A	G	0.00705	SERBP1	-	FALSE
chr1	6283430	T	C	0.00751	ICMT	-	TRUE	AluSx3	SINE,Alu
chr6	42045545	A	G	0.00440	TAF8	+	TRUE	AluSz	SINE,Alu
chr1	65696034	G	C	0.00803	AK4	+	FALSE
chr1	949608	G	A	0.00235	ISG15	+	FALSE
chr8	12286573	G	A	0.00052	FAM86B2	-	FALSE
chr8	144827207	A	T	0.00038	FAM83H-AS1	+	FALSE	ERVL-B4-int	SINE,Alu
chr1	16918717	C	T	0.00550	NBPF1	-	FALSE
chr4	184238324	G	A	0.00870	WWC2	+	FALSE
chr14	95555551	C	T	0.00404	DICER1	-	FALSE
chr17	74555106	T	C	0.00164	SNHG16	+	FALSE
chr16	10624967	T	C	0.00013	EMP2	-	TRUE	AluSx3	SINE,Alu
chr3	40577810	A	G	0.00896	ZNF621	+	TRUE	AluSz	SINE,Alu
chr12	92537702	T	A	0.00368	BTG1	-	FALSE
chr1	9163383	T	C	0.00383		.	FALSE	AluSp	SINE,Alu
chr1	10520058	T	C	0.00907		.	FALSE	AluSx	SINE,Alu
chr2	37075013	T	A	0.00119	STRN	-	FALSE
chr1	144932200	G	T	0.00492	NBPF20,PDE4DIP	+,-	FALSE
chr5	95222277	C	T	0.00599	ELL2	-	FALSE
chr1	1593060	T	C	5.25946E-05	CDK11B,SLC35E2B	-	FALSE
chr22	18572730	A	G	6.64824E-05	PEX26	+	TRUE	AluYf1	SINE,Alu
chr1	37949224	C	T	7.78396E-10	ZC3H12A	+	FALSE
chr19	42375627	A	G	0.00058		.	FALSE	AluSx	SINE,Alu
chr1	145284432	G	A	0.00795	NBPF20,NOTCH2NL	+	FALSE
chr1	40537941	A	C	0.00489	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	25890189	A	G	0.00961	LDLRAP1	+	FALSE
chr17	41144581	A	C	0.00806	RUNDC1	+	FALSE	AluSx	SINE,Alu
chr14	72041443	C	T	0.00842	SIPA1L1	+	FALSE
chr1	26226610	C	T	0.00955	STMN1	-	FALSE
chr1	53679610	G	A	0.00073	CPT2	+	FALSE	AluSz	SINE,Alu
chr1	79109353	G	T	0.00214	IFI44L	+	FALSE	LTR26	SINE,Alu
chr11	65544342	T	C	3.74920E-05	AP5B1	-	TRUE	AluJb	SINE,Alu
chr7	137561083	T	C	0.00194	CREB3L2	-	FALSE	(GT)n	SINE,Alu
chr1	9162929	C	G	0.00584		.	FALSE
chr2	37331531	T	C	0.00063		.	FALSE	AluJb	SINE,Alu
chr1	45504720	G	C	0.00759	ZSWIM5	-	FALSE
chr1	92862888	A	G	0.00029		.	FALSE	AluJr	SINE,Alu
chr9	131872853	C	G	0.00108	CRAT	-	FALSE
chr1	25894469	A	T	0.00326	LDLRAP1	+	FALSE	MIRb	SINE,Alu
chr3	33909024	A	T	0.00134	PDCD6IP	+	FALSE
chr3	14986471	T	C	3.70393E-05	FGD5-AS1	-	TRUE	AluSq2	SINE,Alu
chr6	160101733	T	C	0.00784	SOD2	-	TRUE	AluSz	SINE,Alu
chr2	9770610	A	G	0.00466	YWHAQ	-	FALSE
chr1	110604747	G	A	0.00739	ALX3	-	FALSE
chr12	133298125	A	G	0.00025	PGAM5	+	TRUE	AluJo	SINE,Alu
chr4	7764501	T	A	5.61153E-09	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	16974666	C	T	0.00131	MST1P2	+	FALSE
chr1	53378536	T	C	0.00075	ECHDC2	-	TRUE	AluSp	SINE,Alu
chr4	2940165	T	C	0.00201	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	36067784	T	C	0.00083	PSMB2	-	TRUE	AluSz	SINE,Alu
chr1	20811795	G	C	0.00047	CAMK2N1	-	FALSE
chr12	72096335	A	G	1.07858E-05	TMEM19	+	FALSE	AluSz6	SINE,Alu
chr4	17802819	T	C	0.00112	DCAF16	-	TRUE	AluSz	SINE,Alu
chr3	156259288	T	C	0.00072	SSR3	-	TRUE	AluSq2	SINE,Alu
chr4	186081538	T	A	0.00077	CFAP97	-	FALSE
chr1	112258252	A	G	0.00224	RAP1A	+	FALSE
chr1	206578650	G	C	0.00159	SRGAP2	+	FALSE
chr1	36068276	T	C	5.36857E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	161930908	G	A	0.00083	ATF6	+	FALSE
chr3	122283292	C	G	0.00047	DTX3L,PARP9	+,-	FALSE
chr2	192699639	A	G	0.00017	SDPR	-	FALSE
chr1	161141432	C	G	0.00508	B4GALT3	-	FALSE
chr2	37331555	T	C	0.00171		.	FALSE	AluJb	SINE,Alu
chr2	61277443	A	G	0.00362	PEX13	+	TRUE	AluSx	SINE,Alu
chr1	100657328	A	G	0.00682	DBT	-	FALSE	(AC)n	SINE,Alu
chr21	18940466	A	T	0.00169	CXADR	+	FALSE	AluY	SINE,Alu
chr3	40578933	A	G	0.00947	ZNF621	+	TRUE	AluJr	SINE,Alu
chr1	1662694	T	C	0.00398	SLC35E2	-	TRUE	AluY	SINE,Alu
chr6	42854664	A	G	5.02680E-07	RPL7L1	+	TRUE	AluSc	SINE,Alu
chr5	32586387	T	C	0.00569	SUB1	+	FALSE
chr1	110136846	T	A	0.00639	GNAI3	+	FALSE
chr1	10518037	T	C	0.00017		.	FALSE	AluJr	SINE,Alu
chr5	115165591	T	C	0.00407	ATG12	-	TRUE	AluSq2	SINE,Alu
chr1	45279898	C	T	0.00271		.	FALSE	(TCTT)n	SINE,Alu
chr1	154554940	G	C	0.00032	ADAR	-	FALSE
chr3	158547143	G	A	0.00178	MFSD1	+	FALSE
chr1	16907328	G	T	0.00973	NBPF1	-	FALSE
chr5	204215	A	G	0.00872		.	FALSE	MER68	SINE,Alu
chr7	94297301	G	T	0.00145	PEG10	+	FALSE
chr2	132279046	G	T	0.00967	LOC150776	+	FALSE
chr2	32535568	A	G	0.00192		.	FALSE	MER8	SINE,Alu
chr5	37291636	T	C	0.00518		.	FALSE	AluSx3	SINE,Alu
chr3	73024350	C	A	0.00109	GXYLT2	+	FALSE
chr8	146200271	T	C	0.00182	ZNF252P	-	TRUE	AluSc	SINE,Alu
chr1	28662254	A	G	0.00290	MED18	+	TRUE	AluSq2	SINE,Alu
chr1	10240685	C	T	0.00422	UBE4B	+	FALSE
chr1	46078630	A	G	4.65755E-11	NASP	+	FALSE
chr5	131715011	A	G	0.00761	SLC22A5	+	FALSE
chr1	241794056	C	A	0.00753	OPN3,CHML	-	FALSE
chr2	217498311	T	C	0.00977	IGFBP2	+	FALSE	(CCG)n	SINE,Alu
chr1	231377081	C	T	0.00895	GNPAT	+	FALSE
chr1	173864944	G	T	2.40127E-05		.	FALSE
chr12	9848629	A	G	0.00027	CLEC2D	+	FALSE
chr1	28261658	T	G	0.00280	SMPDL3B	+	FALSE
chr5	95236459	C	T	0.00330	ELL2	-	FALSE
chr2	101635538	C	T	0.00069	TBC1D8,RPL31	+,-	FALSE	Charlie17	SINE,Alu
chr1	245008386	G	C	0.00041		.	FALSE	MER2	SINE,Alu
chr1	40435513	C	A	0.00656	MFSD2A	+	FALSE
chr1	38423235	C	A	0.00040	SF3A3	-	FALSE	AluJo	SINE,Alu
chr1	12677549	T	A	1.84464E-05	DHRS3	-	FALSE	(A)n	SINE,Alu
chr1	65297860	A	T	0.00847	RAVER2	+	FALSE
chr1	29644328	C	T	0.00076	PTPRU	+	FALSE
chr1	1655474	G	A	0.00694	CDK11B,CDK11A	-	FALSE
chr5	79276281	A	G	0.00026	MTX3	-	FALSE
chr1	1593857	T	C	0.00424	CDK11B,SLC35E2B	-	FALSE
chr3	138121198	C	T	0.00076	MRAS	+	FALSE
chr3	73112378	A	G	0.00261	PPP4R2,EBLN2	+	FALSE
chr9	133579674	A	G	0.00018	EXOSC2	+	TRUE	AluSx3	SINE,Alu
chr17	42880190	T	C	0.00284	GJC1	-	TRUE	AluJb	SINE,Alu
chr1	11847346	G	C	0.00547	C1orf167,MTHFR	+,-	FALSE
chr5	40832552	G	T	1.14652E-07	RPL37	-	FALSE
chr1	45116985	C	T	0.00318	RNF220	+	FALSE
chr4	95588274	G	A	0.00095	PDLIM5	+	FALSE
chr3	120113286	C	T	1.47726E-06	FSTL1	-	FALSE
chr1	200375418	C	T	0.00425	ZNF281	-	FALSE
chr1	70718278	C	G	0.00663		.	FALSE
chr8	11700444	C	G	0.00042	CTSB	-	FALSE	AluSq2	SINE,Alu
chr8	42043493	G	A	0.00045	PLAT	-	FALSE	MLT2C1	SINE,Alu
chr4	13604418	G	C	2.95746E-07	BOD1L1	-	FALSE
chr13	73651653	G	T	0.00532	KLF5	+	FALSE
chr1	28150601	A	T	0.00558	STX12	+	FALSE
chr2	28002603	C	A	0.00010	MRPL33	+	FALSE
chr3	93846831	G	A	0.00547		.	FALSE	AluSq2	SINE,Alu
chr2	202242616	G	A	0.00880	TRAK2	-	FALSE
chr1	110913120	C	T	0.00627	SLC16A4	-	FALSE
chr3	194789330	G	T	0.00699	XXYLT1	-	FALSE	AluJr	SINE,Alu
chr17	48828384	G	T	0.00283	LUC7L3	+	FALSE
chr1	10520684	T	C	0.00842	DFFA	-	TRUE	AluSc8	SINE,Alu
chr11	6411935	T	C	0.00905	SMPD1	+	FALSE	(CTGGCG)n	SINE,Alu
chr5	109202858	G	A	0.00054	MAN2A1	+	FALSE	(A)n	SINE,Alu
chr1	54493197	T	C	0.00064	TMEM59	-	TRUE	AluSz6	SINE,Alu
chr1	171751051	A	G	0.00522	METTL13	+	FALSE
chr1	51873951	G	A	0.00588	EPS15	-	FALSE
chr1	87573349	C	G	0.00914	HS2ST1	+	FALSE
chr1	1593828	G	C	0.00348	CDK11B,SLC35E2B	-	FALSE
chr3	15114306	T	C	0.00036	RBSN	-	TRUE	AluY	SINE,Alu
chr5	139931627	C	T	0.00073	SRA1	-	FALSE
chr9	130268408	T	C	0.00416	FAM129B	-	FALSE	(CTCA)n	SINE,Alu
chr9	96438974	C	G	0.00303	PHF2	+	FALSE	(CTCCAC)n	SINE,Alu
chr1	16889820	C	T	0.00012	NBPF1	-	FALSE
chr3	160213318	T	G	0.00215	KPNA4	-	FALSE
chr3	49067308	G	A	0.00278	QRICH1	-	FALSE
chr1	183213770	G	C	0.00734	LAMC2	+	FALSE
chr3	44791536	T	C	4.11776E-05	KIAA1143	-	TRUE	AluJr	SINE,Alu
chr11	118880839	A	G	0.00922	CCDC84	+	TRUE	AluJb	SINE,Alu
chr19	11560483	A	G	0.00775	PRKCSH	+	TRUE	AluSx	SINE,Alu
chr19	1981317	T	A	0.00539	CSNK1G2	+	FALSE
chr3	44790759	T	C	0.00744	KIAA1143	-	TRUE	AluY	SINE,Alu
chr1	16133987	T	C	0.00707	UQCRHL	-	FALSE
chr3	196080624	T	C	0.00795	UBXN7	-	TRUE	AluSx	SINE,Alu
chr1	33149486	A	G	0.00528	SYNC,RBBP4	+,-	FALSE	AluSx1	SINE,Alu
chr3	98531342	A	G	0.00607	DCBLD2	-	FALSE
chr19	9673275	T	C	0.00081		.	FALSE	Tigger1	SINE,Alu
chr1	120164994	C	T	0.00829	ZNF697	-	FALSE
chr2	187544222	A	G	0.00411	ITGAV	+	FALSE
chr1	19542250	T	C	0.00859	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	32697071	C	A	0.00134	EIF3I	+	FALSE	AluSp	SINE,Alu
chr1	146400122	C	G	0.00039	NBPF20,NBPF10,NBPF25P,NBPF12	+	FALSE
chr4	177252238	A	G	9.63526E-05	SPCS3	+	TRUE

RBP	MSI1
Knock-Method	siRNA
RBP Family	RRM_1
Biosample Name	U251
Tissue Type	Glioblastoma
Biosample Type	Cell line
# of Control	3
# of Treat	3
Species	Human
Data Source	GEO
Profile ID	GSE68800
Platform	GPL11154
Pubmed ID	26100017

MSI1 - Target Gene Network