RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr10	75008955	T	C	0.00058	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr3	12857493	C	T	0.00720	CAND2	+	FALSE
chr7	29961437	T	G	6.91541E-06	SCRN1	-	FALSE
chr4	17803604	T	C	0.00414	DCAF16	-	TRUE	AluY	SINE,Alu
chr2	26477130	T	C	0.00501	HADHB	+	FALSE
chr1	109884775	T	G	0.00026	SORT1	-	FALSE
chr1	10520174	T	C	0.00413		.	FALSE	AluSx	SINE,Alu
chr1	53712569	C	A	0.00061	LRP8	-	FALSE	(CA)n	SINE,Alu
chr6	74134869	T	C	0.00024	MB21D1	-	TRUE	AluSz	SINE,Alu
chr1	70718269	A	G	0.00234		.	FALSE
chr9	136897584	C	A	0.00060	BRD3	-	FALSE	A-rich	SINE,Alu
chr9	137332311	T	G	0.00036	RXRA	+	FALSE
chr3	52289298	G	T	0.00059	WDR82	-	FALSE
chr2	46808168	C	T	0.00377	RHOQ	+	FALSE
chr5	172385223	T	C	0.00796	LOC100268168	-	FALSE	AluSp	SINE,Alu
chr3	123332546	C	G	0.00964	MYLK-AS1,MYLK	+,-	FALSE
chr2	238673923	C	A	0.00813	LRRFIP1	+	FALSE	(CA)n	SINE,Alu
chr1	6282400	T	C	0.00809	ICMT	-	TRUE	AluSz	SINE,Alu
chr4	2940364	T	C	0.00718	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr3	48787219	A	G	0.00024	PRKAR2A	-	FALSE
chr1	114940209	G	T	5.13716E-05	TRIM33	-	FALSE	(T)n	SINE,Alu
chr1	35899684	C	T	0.00051	KIAA0319L	-	FALSE	AluSc8	SINE,Alu
chr1	11847346	G	C	0.00547	C1orf167,MTHFR	+,-	FALSE
chr1	110566210	T	A	0.00832	AHCYL1	+	FALSE
chr16	48387238	A	G	0.00013	LONP2,MIR5095	+	TRUE	AluJb	SINE,Alu
chr1	53289686	A	G	0.00265	ZYG11B	+	TRUE	AluSz	SINE,Alu
chr14	62213927	C	A	0.00771	HIF1A,HIF1A-AS2	+,-	FALSE
chr1	32377391	G	A	0.00439	PTP4A2	-	FALSE
chr1	154128839	G	T	0.00579	TPM3	-	FALSE
chr2	174090631	A	C	0.00038	ZAK,MLK7-AS1	+,-	FALSE
chr13	73651653	G	T	0.00532	KLF5	+	FALSE
chrX	123047168	A	G	2.82326E-05	XIAP	+	TRUE	AluSx	SINE,Alu
chr1	150548904	A	T	0.00052	MCL1	-	FALSE
chr1	180247483	T	C	0.00167		.	FALSE
chr1	16933638	G	A	4.07227E-05	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr17	57279167	A	G	6.96573E-05	PRR11	+	TRUE	AluSq2	SINE,Alu
chr1	21100860	C	A	0.00445	HP1BP3	-	FALSE	(AC)n	SINE,Alu
chr2	206983491	T	C	0.00505		.	FALSE	AluSx	SINE,Alu
chr1	229631734	T	C	0.00611	NUP133	-	FALSE
chr5	72801329	T	A	0.00073	BTF3	+	FALSE
chr2	86250101	T	C	0.00038	LOC90784	-	TRUE	AluSx	SINE,Alu
chr16	15794023	A	G	4.91052E-06	NDE1	+	TRUE	AluSz6	SINE,Alu
chr10	15120275	T	C	0.00017	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr1	201488771	A	G	0.00062		.	FALSE	AluSq2	SINE,Alu
chr1	2125114	C	T	8.70493E-12	FAAP20	-	FALSE
chr1	1650801	T	C	0.00761	CDK11B,CDK11A	-	FALSE
chr1	16945027	T	C	0.00483	CROCCP2	-	FALSE	L1ME3Cz	SINE,Alu
chr2	61276758	A	G	0.00924	PEX13	+	TRUE	AluSp	SINE,Alu
chr4	139088295	C	T	0.00537	SLC7A11-AS1,SLC7A11	+,-	FALSE
chr2	202028841	A	G	0.00641	CFLAR	+	TRUE	AluSx1	SINE,Alu
chr1	2323041	T	C	0.00970	MORN1	-	FALSE
chr1	26608017	T	A	3.67009E-06		.	FALSE
chr4	128758175	A	G	0.00385		.	FALSE	AluSx	SINE,Alu
chr8	104082307	C	T	0.00675	ATP6V1C1	+	FALSE	L1ME3G	SINE,Alu
chr2	73460299	G	C	0.00180	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr4	2940147	T	C	0.00061	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	46075663	A	G	0.00543	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	169101307	C	T	0.00405	ATP1B1	+	FALSE
chr6	44417182	A	G	0.00018	CDC5L	+	TRUE	FLAM_C	SINE,Alu
chr1	67874689	T	C	0.00338	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr14	19684445	A	G	0.00351	DUXAP10	+	FALSE
chr5	118729619	A	G	0.00586	TNFAIP8	+	FALSE
chr2	37331107	T	C	0.00020		.	FALSE	AluSx1	SINE,Alu
chr1	36388202	T	G	0.00707	AGO1	+	FALSE	(GCCT)n	SINE,Alu
chr1	2121118	C	T	0.00234	FAAP20	-	FALSE
chr2	206987635	T	C	0.00930		.	FALSE	AluJb	SINE,Alu
chr4	2940085	T	C	0.00801	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	223178477	C	T	0.00519	DISP1	+	FALSE
chr6	42856100	A	G	0.00048	RPL7L1	+	TRUE	AluSz	SINE,Alu
chr2	160625969	T	C	0.00527	LY75-CD302,CD302	-	TRUE	AluSz	SINE,Alu
chr20	18469054	T	C	0.00522	RBBP9	-	TRUE	AluJr	SINE,Alu
chr2	131131424	G	C	0.00845	PTPN18	+	FALSE
chr3	73115390	C	T	0.00462	PPP4R2	+	FALSE	(AT)n	SINE,Alu
chr2	73957124	A	G	2.00679E-05	TPRKB	-	FALSE
chr2	172178540	T	C	0.00040	METTL8	-	TRUE	AluSx3	SINE,Alu
chr1	60340527	G	A	0.00027	HOOK1	+	FALSE
chr4	7761211	C	T	8.70555E-11	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	19542458	T	C	0.00113	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr4	57326291	A	G	0.00279	PAICS	+	TRUE	AluJr	SINE,Alu
chr5	96129512	A	G	0.00997	ERAP1	-	FALSE
chr3	105271344	A	G	0.00460	ALCAM	+	FALSE
chr12	56510700	G	A	2.03060E-05	RPL41	+	FALSE
chr1	45975345	A	G	0.00071	MMACHC	+	TRUE	AluSg7	SINE,Alu
chr1	1477244	T	C	0.00365	SSU72	-	FALSE
chr1	154916602	C	A	0.00475	PBXIP1	-	FALSE	MIRb	SINE,Alu
chr1	10521130	T	C	1.15946E-05	DFFA	-	TRUE	AluY	SINE,Alu
chr1	25570565	G	A	0.00244	RSRP1	-	FALSE	Alu	SINE,Alu
chr6	27425185	C	A	0.00577	ZNF184	-	FALSE
chr1	36386884	C	T	0.00375	AGO1	+	FALSE
chr1	9664845	C	T	1.14015E-08	TMEM201	+	FALSE
chr11	9602076	T	C	7.58058E-05	WEE1	+	FALSE	AluSg	SINE,Alu
chr1	179312752	C	T	0.00106	SOAT1	+	FALSE
chr2	101886749	T	G	0.00534	CNOT11	+	FALSE
chr5	121400545	A	T	0.00740	LOX	-	FALSE
chr1	78414310	C	A	9.26299E-05	FUBP1	-	FALSE
chr1	115249239	G	A	0.00034	NRAS	-	FALSE
chr1	143189486	A	G	0.00122	LOC102723769	-	FALSE
chr2	73460314	C	T	0.00333	PRADC1	-	FALSE	(CGGCGC)n	SINE,Alu
chr16	53525857	A	G	0.00093	AKTIP	-	FALSE
chr1	16889414	T	C	0.00384	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr1	89271574	T	C	0.00074	PKN2	+	FALSE
chr3	38566722	T	C	0.00426	EXOG	+	FALSE	MIRb	SINE,Alu
chr1	32373437	G	A	1.22125E-14	PTP4A2	-	FALSE
chr9	136217449	C	G	0.00158	RPL7A	+	FALSE
chr8	12286546	A	G	0.00400	FAM86B2	-	FALSE
chr8	101932094	T	A	0.00288	YWHAZ	-	FALSE	MER34B-int	SINE,Alu
chr1	16933135	G	T	0.00363	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr2	132049915	A	G	0.00226	LOC440910	+	FALSE	AluSg4	SINE,Alu
chr1	38182333	G	T	0.00063	EPHA10	-	FALSE	L2d2	SINE,Alu
chr1	117618067	C	T	0.00118	TTF2	+	FALSE
chr3	195461463	A	G	0.00609		.	FALSE	AluJb	SINE,Alu
chr1	146467146	A	G	0.00510	NBPF20,NBPF25P,NBPF12	+	TRUE	L1MC4	SINE,Alu
chr1	28836048	G	A	0.00035	SNHG3,RCC1	+	FALSE	AluSx4	SINE,Alu
chr1	45975628	A	G	0.00465	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr12	48539888	C	A	0.00088	PFKM	+	FALSE
chr2	61370704	T	A	0.00747	LOC339803	-	FALSE
chr1	26802401	T	G	4.43852E-05	HMGN2	+	FALSE
chr13	30780287	C	T	0.00748	KATNAL1	-	FALSE	AluSx1	SINE,Alu
chr5	179382563	T	C	0.00704	RNF130	-	FALSE
chr16	75479910	T	C	0.00026	TMEM170A	-	TRUE	AluSg4	SINE,Alu
chr3	197024681	T	C	0.00018	DLG1	-	FALSE
chr1	10520180	T	C	0.00267		.	FALSE	AluSx	SINE,Alu
chr8	144681777	G	T	0.00383	TIGD5	+	FALSE
chr1	78414334	C	A	0.00702	FUBP1	-	FALSE	A-rich	SINE,Alu
chr1	28835934	A	G	0.00596	SNHG3,RCC1	+	TRUE	AluSx4	SINE,Alu
chr1	145512081	A	G	0.00579	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr1	10517992	T	C	0.00417		.	FALSE	AluJr	SINE,Alu
chr1	209605646	A	C	0.00478	MIR205HG	+	FALSE	(AGC)n	SINE,Alu
chr6	32148031	A	G	1.10299E-06		.	FALSE
chr1	41236854	T	A	0.00075	NFYC	+	FALSE	(T)n	SINE,Alu
chr10	75008815	T	C	0.00309	DNAJC9-AS1,MRPS16	+,-	FALSE	AluJr	SINE,Alu
chr14	74431191	A	G	0.00670	ENTPD5	-	FALSE
chr3	181430144	C	T	0.00043	SOX2-OT,SOX2	+	FALSE
chr1	110551680	C	T	0.00415	AHCYL1	+	FALSE
chr4	159176109	C	A	0.00042	TMEM144	+	FALSE	MIR	SINE,Alu
chr1	36068231	T	C	0.00935	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	86049361	A	G	0.00036	CYR61	+	FALSE
chr5	40832555	A	T	0.00347	RPL37	-	FALSE
chr9	89626839	T	G	0.00016	LOC440173	-	FALSE
chr8	143352528	A	C	0.00312	TSNARE1	-	FALSE
chr1	880052	C	T	0.00231	NOC2L	-	FALSE
chr2	217366626	A	G	0.00057		.	FALSE	AluSz	SINE,Alu
chr11	68523504	T	C	0.00029	CPT1A	-	TRUE	AluSq	SINE,Alu
chr1	1417974	C	T	0.00677	ATAD3B	+	FALSE
chr1	53291382	A	G	0.00132	ZYG11B	+	TRUE	AluJr	SINE,Alu
chr1	65298625	G	A	0.00761	RAVER2	+	FALSE	X12_DNA	SINE,Alu
chr1	28825465	A	G	0.00496	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr1	70610735	T	C	0.00259	LRRC40	-	FALSE
chr17	79514129	G	A	0.00164	FAAP100	-	FALSE
chr2	36776057	A	G	0.00034	CRIM1	+	FALSE
chr1	21100753	T	C	0.00624	HP1BP3	-	TRUE	AluJr	SINE,Alu
chr1	19586455	A	G	3.44081E-06	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	40537937	A	C	0.00091	CAP1	+	FALSE	(A)n	SINE,Alu
chr15	41590978	A	G	1.05775E-06	OIP5-AS1	+	TRUE	AluSx1	SINE,Alu
chr1	145513017	A	G	0.00142	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	144813815	A	G	2.28281E-05	NBPF20,NBPF9	+	FALSE
chr1	24086786	A	C	0.00812	TCEB3	+	FALSE
chr1	33148225	A	G	0.00031	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	150548883	A	C	0.00255	MCL1	-	FALSE
chr3	105258861	A	G	0.00030	ALCAM	+	FALSE
chr12	124146569	A	G	0.00013	GTF2H3	+	TRUE	AluSq2	SINE,Alu
chr1	15992470	G	A	0.00605		.	FALSE
chr1	143467373	T	C	0.00182		.	FALSE
chr2	37429627	A	G	0.00330	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr3	196612193	A	G	7.35500E-07	SENP5	+	FALSE
chr1	94032944	C	T	0.00147	BCAR3	-	FALSE
chr11	62299945	A	C	0.00314	AHNAK	-	FALSE
chr9	132573290	C	T	0.00881	TOR1B	+	FALSE
chr1	27992799	T	A	0.00014	IFI6	-	FALSE	FAM	SINE,Alu
chr1	11347154	A	T	0.00441	UBIAD1	+	FALSE
chr2	187544234	C	T	0.00078	ITGAV	+	FALSE
chr1	16889866	G	A	0.00995	NBPF1	-	FALSE
chr1	23636277	A	T	0.00188	HNRNPR	-	FALSE
chr5	122359499	C	A	0.00277	PPIC	-	FALSE	(AC)n	SINE,Alu
chr1	23381596	T	C	0.00762	KDM1A	+	FALSE
chr4	3514695	A	G	1.35580E-12	LRPAP1	-	FALSE
chr5	56559238	T	C	0.00149	GPBP1	+	FALSE
chr5	68426312	G	A	0.00344	SLC30A5	+	FALSE
chr1	91486839	T	C	0.00514	ZNF644	-	FALSE
chr3	119212010	A	G	0.00685	POGLUT1	+	FALSE
chr1	9328092	A	G	0.00058	H6PD	+	TRUE	AluJr	SINE,Alu
chr1	100657416	C	T	0.00228	DBT	-	FALSE	AluJb	SINE,Alu
chr1	6282426	T	C	0.00513	ICMT	-	TRUE	AluSz	SINE,Alu
chr4	89625427	G	C	0.00025	HERC3	+	FALSE
chr1	9642827	G	A	0.00521	SLC25A33	+	FALSE
chr2	201774774	T	C	0.00017		.	FALSE	AluJr4	SINE,Alu
chr1	40537944	C	A	0.00076	CAP1	+	FALSE
chr4	39552066	T	C	0.00370	UGDH-AS1,SMIM14	+,-	FALSE	AluSx	SINE,Alu
chr1	213244381	G	A	0.00345	RPS6KC1	+	FALSE
chr1	204525649	A	G	0.00191	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	179829093	T	C	0.00056	TOR1AIP2	-	TRUE	AluJr	SINE,Alu
chr7	158679732	G	A	0.00456	WDR60	+	FALSE
chr10	75009722	T	C	0.00555	DNAJC9-AS1,MRPS16	+,-	FALSE	AluY	SINE,Alu
chr1	93827764	A	G	0.00056	DR1	+	FALSE
chr1	54571491	A	G	0.00538	TCEANC2	+	TRUE	AluSc	SINE,Alu
chr1	155695968	A	G	0.00017	DAP3	+	TRUE	AluSp	SINE,Alu
chr1	36068364	T	C	9.25575E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	17320251	G	A	0.00367	ATP13A2	-	FALSE
chr1	149581866	C	G	0.00774	LINC00623,LINC00869,LOC103091866	+	FALSE	L2b	SINE,Alu
chr5	140594466	G	A	0.00209	PCDHB13	+	FALSE
chr1	101442570	A	T	0.00377	SLC30A7	+	FALSE
chr1	146649940	C	T	1.24118E-05	PDIA3P1	+	FALSE
chr5	37290400	T	C	0.00282		.	FALSE	AluSz	SINE,Alu
chr3	58308214	G	A	0.00113		.	FALSE	LTR49	SINE,Alu
chr2	91805938	A	G	0.00000		.	FALSE	MLT1H1	SINE,Alu
chr7	6501830	G	A	0.00110	KDELR2	-	FALSE
chr6	31236900	G	A	0.00167		.	FALSE
chr1	23636278	A	T	0.00085	HNRNPR	-	FALSE
chr1	51434560	G	A	0.00685	CDKN2C	+	FALSE
chr1	78414329	G	A	0.00785	FUBP1	-	FALSE	A-rich	SINE,Alu
chr4	55147769	C	T	0.00079	PDGFRA	+	FALSE
chr1	17998	C	T	0.00194	WASH7P	-	FALSE
chr1	10519064	T	C	0.00515		.	FALSE	AluSx3	SINE,Alu
chr12	98942695	A	G	0.00204	TMPO	+	TRUE	AluSc	SINE,Alu
chr9	115447534	T	C	0.00203	INIP	-	TRUE	AluJb	SINE,Alu
chr1	52381350	T	G	4.39398E-08	RAB3B	-	FALSE
chr1	10093371	C	T	0.00264	UBE4B	+	FALSE
chr3	5258985	T	C	0.00436	EDEM1	+	FALSE
chr1	148556087	G	C	0.00106		.	FALSE
chr5	141691255	C	A	0.00323	SPRY4	-	FALSE

RBP	METTL3
Knock-Method	siRNA
RBP Family	MT-A70
Biosample Name	HEK293
Tissue Type	Kidney
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE56010
Platform	GPL11154
Pubmed ID	25719671

METTL3 - Target Gene Network