Dataset Overview
RBP
CNBP
Knock-Method
siRNA
RBP Family
zf-CCHC
Biosample Name
MCF7
Tissue Type
Breast
Biosample Type
Cell line
# of Control
2
# of Treat
2
Species
Human
Data Source
GEO
Profile ID
GSE79586
Platform
GPL167891
Pubmed ID
28813674
CNBP - Target Gene Network
up-regulated gene
down-regulated gene
Gene Type:
the most differential
the most up-regulated
the most down-regulated
# of Top Genes:
25
50
75
100
Differential Expression Genes responding to KD/KO of CNBP
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Gene
Mean Expr. of Control
Mean Expr. of KD/KO
logFC
PValue
FDR
A2ML1
0.09
0.46
2.05953
4.51289E-08
1.10888E-06
AAMP
85.1
99.28
0.17095
0.01976
0.07775
AARD
37.84
32.05
-0.27609
0.00020
0.00191
AARS
128.87
104.73
-0.32425
2.22073E-06
3.74191E-05
AATF
28.41
22.59
-0.34133
1.20927E-05
0.00017
ABAT
21.98
25.16
0.16029
0.02612
0.09579
ABCA12
24.3
14.7
-0.71655
1.64714E-14
1.20523E-12
ABCB6
31.56
40.59
0.22532
0.00362
0.02091
ABCC10
8.48
8.68
0.34328
0.00047
0.00395
ABCC2
0.32
0.76
1.24433
3.97414E-07
8.08502E-06
Showing 1 to 10 of 4,287 entries
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Function Analysis of Target Genes of CNBP
Set Enrichment Analysis (GSEA)
Gene Ontology(GO) Enrichment
KEGG Pathway Enrichment
Differential Alternative Splicing
Exon Skipping
Mutually Exclusive Exons
Alternative 5’ splice site
Alternative 3’ splice site
Intron Retention
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AARS
70291935_70292120_70289630_70289739_70292882_70293089
0.00572
-0.334
DataSet_02_102
View details
ABCF1
30550170_30550284_30548182_30548296_30550842_30550965
0.00027
-0.834
DataSet_02_102
View details
ABHD11
73151258_73151440_73150423_73151021_73151891_73152065
0.00056
-0.4
DataSet_02_102
View details
AC010186.2
9809163_9809293_9808468_9808575_9809516_9809578
0.00150
0.375
DataSet_02_102
View details
AC026191.1
9397484_9397543_9391368_9391750_9404523_9404690
0.00000
-1.0
DataSet_02_102
View details
AC068533.4
65595730_65595829_65592690_65592727_65599266_65599361
0.00029
0.44
DataSet_02_102
View details
AC091178.1
37217349_37217441_37213304_37213412_37219674_37219799
0.00276
0.298
DataSet_02_102
View details
AC092821.3
9809163_9809245_9808468_9808575_9809516_9809898
0.00049
0.231
DataSet_02_102
View details
AC159540.1
98089381_98089511_98088769_98088865_98091456_98091651
0.00051
0.5
DataSet_02_102
View details
AC211429.1
75113474_75113533_75104327_75104454_75115140_75115385
0.00082
-0.462
DataSet_02_102
View details
Showing 1 to 10 of 480 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC026362.1
123460357_123460414_123461200_123461314_123459866_123459930
0.00053
0.55
DataSet_02_102
View details
AFG3L1P
90044046_90044210_90045217_90045286_90038993_90039173
0.00019
0.5
DataSet_02_102
View details
AP3S2
90420537_90420656_90421496_90421532_90414706_90414778
0.00009
-0.422
DataSet_02_102
View details
ARIH2
48964894_48965246_48982568_48982614_48962150_48962272
0.00283
-0.379
DataSet_02_102
View details
CLN6
68506627_68506726_68510873_68510988_68503600_68503656
0.00243
0.75
DataSet_02_102
View details
CPSF4
99047898_99047994_99048324_99048418_99045743_99045896
0.00245
-0.5
DataSet_02_102
View details
DLST
75349293_75349327_75352288_75352337_75348618_75348719
0.00142
-0.771
DataSet_02_102
View details
DPH5
101467022_101467100_101479265_101479374_101460665_101460705
0.00150
0.425
DataSet_02_102
View details
EEF2KMT
5141794_5141896_5143484_5143565_5140432_5140566
0.00239
-0.138
DataSet_02_102
View details
FAM49B
130874474_130874580_130883620_130883742_130867856_130867993
0.00161
0.218
DataSet_02_102
View details
Showing 1 to 10 of 38 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AKR1C2
5041391_5042858_5042741_5042858_5040816_5040939
0.00802
-0.25
DataSet_02_102
View details
ANAPC15
71823695_71823826_71823779_71823826_71822457_71822542
0.00383
-0.309
DataSet_02_102
View details
APTR
77325212_77325582_77325488_77325582_77314518_77314645
0.00204
0.416
DataSet_02_102
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ARFIP1
153701088_153701378_153701088_153701243_153750776_153750878
0.00199
0.475
DataSet_02_102
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ATP6AP1
153657393_153660003_153657393_153657520_153660175_153660250
0.00000
-0.75
DataSet_02_102
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BAX
49458804_49459090_49458804_49458856_49459454_49459590
0.00000
0.734
DataSet_02_102
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CD151
834529_834803_834529_834591_836062_836153
0.00158
-0.222
DataSet_02_102
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CDC42SE2
130694901_130695251_130694901_130695240_130721235_130721337
0.00006
0.585
DataSet_02_102
View details
CENPN
81047740_81047996_81047740_81047786_81050930_81050990
0.00188
0.5
DataSet_02_102
View details
COPS6
99688860_99688953_99688860_99688930_99689042_99689143
0.00087
-0.451
DataSet_02_102
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Showing 1 to 10 of 75 entries
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC004241.1
48113382_48113482_48113387_48113482_48112929_48113055
0.00000
-0.809
DataSet_02_102
View details
AC024592.3
5896463_5896661_5896463_5896586_5896915_5897008
0.00213
-0.416
DataSet_02_102
View details
AC025171.2
43044494_43045370_43044800_43045370_43042234_43043669
0.00000
0.762
DataSet_02_102
View details
AFMID
76193215_76193641_76193226_76193641_76187050_76187141
0.00006
0.581
DataSet_02_102
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AKT1
105239214_105239429_105239214_105239330_105239587_105239716
0.00592
-0.367
DataSet_02_102
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AL162258.1
153603486_153603587_153603486_153603554_153604509_153604716
0.00167
0.591
DataSet_02_102
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ANAPC5
121756079_121756207_121756079_121756154_121756303_121756411
0.00005
-0.634
DataSet_02_102
View details
APEH
49713488_49713948_49713810_49713948_49713323_49713399
0.00120
-0.5
DataSet_02_102
View details
ATP5G3
176046082_176046211_176046082_176046194_176046383_176046438
0.00084
-0.379
DataSet_02_102
View details
BCLAF1
136593132_136593217_136593132_136593214_136594219_136594325
0.00472
-0.329
DataSet_02_102
View details
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RBP
LongES_LongEE_ShortES_ShortEE_FlankingES_FlankingEE
pValue
△Inc
Dataset ID
Sashimi plot
AC040162.1
67968699_67969381_67968699_67968851_67969198_67969381
0.00039
-0.35
DataSet_02_102
View details
AKAP8L
15514285_15514526_15514285_15514366_15514468_15514526
0.00012
-0.5
DataSet_02_102
View details
AKAP8L
15514285_15514853_15514285_15514366_15514820_15514853
0.00051
0.452
DataSet_02_102
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ATP6V0B
44441973_44442331_44441973_44442051_44442261_44442331
0.00119
-0.5
DataSet_02_102
View details
ATXN2L
28847253_28847806_28847253_28847443_28847769_28847806
0.00087
0.619
DataSet_02_102
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BCKDHA
41916541_41916914_41916541_41916721_41916827_41916914
0.00709
-0.119
DataSet_02_102
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C18orf8
21110192_21110576_21110192_21110261_21110474_21110576
0.00000
0.775
DataSet_02_102
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CCDC125
68616063_68616407_68616063_68616172_68616291_68616407
0.00022
0.432
DataSet_02_102
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CCNDBP1
43486278_43486659_43486278_43486335_43486612_43486659
0.00084
0.267
DataSet_02_102
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CDK10
89759681_89760640_89759681_89759875_89760580_89760640
0.00028
-0.433
DataSet_02_102
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Differential Variants in RNA (DVRs)
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Chrom
Site
Ref_allele
Alt_allele
Pvalue
Genename
Strand
KnownRNAediting
RepeatName
RepeatFamily
chr1
144598726
A
C
0.00325
NBPF20
+
FALSE
chr1
67874697
T
C
0.00022
SERBP1
-
TRUE
AluSx3
SINE,Alu
chr1
93826609
T
G
0.00073
DR1
+
FALSE
chr1
212273639
C
T
0.00710
DTL
+
FALSE
chr1
10519119
T
C
0.00892
.
FALSE
AluSx3
SINE,Alu
chr1
28662057
A
G
3.94650E-05
MED18
+
TRUE
AluSq2
SINE,Alu
chr1
10517653
T
C
0.00228
.
FALSE
AluSx1
SINE,Alu
chr1
10519112
T
C
0.00333
.
FALSE
AluSx3
SINE,Alu
chr1
10044366
A
G
0.00531
NMNAT1
+
TRUE
AluSx1
SINE,Alu
chr1
144931727
G
A
4.04936E-05
NBPF20,PDE4DIP
+,-
FALSE
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Differential Expression Gene Analysis
Heatmap of Unsupervised Hierarchical Clustering
Scatter Diagram of Differential Expression