RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr19	21474857	T	C	0.00131	ZNF708	-	TRUE	AluSc	SINE,Alu
chr1	112003957	G	A	0.01000	ATP5F1	+	FALSE	Helitron2Na_Mam	SINE,Alu
chr1	144828857	C	G	4.37583E-07	NBPF20,NBPF9	+	FALSE
chr7	94297294	T	G	0.00494	PEG10	+	FALSE
chr1	16575726	T	C	0.00916	FBXO42	-	FALSE
chr1	40923019	G	A	0.00019	ZFP69B	+	FALSE
chr10	101992810	T	C	0.00149	CWF19L1	-	TRUE	AluJb	SINE,Alu
chr1	227847344	T	C	0.00205	ZNF678	+	FALSE
chr1	51822219	G	A	0.00017	EPS15	-	FALSE
chr1	45976265	A	G	0.00657	MMACHC	+	FALSE
chr1	145826918	G	C	0.00829	NBPF20,NBPF10,GPR89A	+,-	FALSE
chr19	42375611	A	G	0.00426		.	FALSE	AluSx	SINE,Alu
chr1	46830110	A	G	0.00283	NSUN4	+	TRUE	AluSx1	SINE,Alu
chr1	19232211	G	A	0.00552	IFFO2	-	FALSE	(GT)n	SINE,Alu
chr1	92976590	G	A	0.00768	EVI5	-	FALSE
chr9	19373161	A	G	0.00647	DENND4C	+	TRUE	MADE1	SINE,Alu
chr2	55516937	G	T	0.00250	CCDC88A	-	FALSE	(GA)n	SINE,Alu
chr2	29023117	A	T	0.00805	PPP1CB	+	FALSE
chr4	57327087	A	G	0.00047	PAICS	+	TRUE	AluSx1	SINE,Alu
chr1	204521631	A	G	0.00024	MDM4	+	TRUE	AluSg	SINE,Alu
chr1	235492546	T	G	0.00786	GGPS1	+	FALSE
chr3	42592902	T	C	5.80731E-05	SEC22C	-	FALSE	AluJr	SINE,Alu
chr1	15899549	T	C	0.00960	AGMAT	-	TRUE	AluSq2	SINE,Alu
chr1	28930023	G	A	0.00037	TAF12	-	FALSE
chr1	9644587	A	G	0.00022		.	FALSE	AluSx	SINE,Alu
chr1	27108245	T	C	0.00265	ARID1A	+	FALSE
chr5	96350710	G	A	0.00302	LNPEP	+	FALSE
chr1	16894514	C	T	0.00348	NBPF1	-	FALSE
chr3	45722287	A	G	0.00197	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr17	65334886	T	C	8.05380E-09	PSMD12	-	TRUE	AluSq	SINE,Alu
chr3	14526656	A	G	0.00189	SLC6A6	+	FALSE
chr2	9629293	T	G	0.00426	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr2	9629290	T	G	0.00180	ADAM17	-	FALSE	(TGT)n	SINE,Alu
chr1	159946783	A	G	0.00097	LINC01133	+	FALSE	(GAAA)n	SINE,Alu
chr4	190883001	C	G	0.00859	FRG1	+	FALSE
chr2	38971059	A	C	0.00539	SRSF7	-	FALSE
chr1	24022914	A	G	0.00347	RPL11	+	FALSE
chr1	1419678	A	G	0.00558	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr6	31324110	G	A	0.00521		.	FALSE
chr7	48146025	A	G	0.00106	UPP1	+	TRUE	AluSq	SINE,Alu
chr22	18571457	A	G	0.00025	PEX26	+	TRUE	AluSz	SINE,Alu
chr2	3609064	G	A	0.00194	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr2	37429626	A	G	0.00028	CEBPZOS,CEBPZ	+,-	FALSE	AluSz	SINE,Alu
chr1	145695329	A	G	0.00400	NBPF20,NBPF10	+	FALSE	AluSz	SINE,Alu
chr2	37331841	C	T	0.00179		.	FALSE	L1MC4	SINE,Alu
chr1	19586520	A	G	0.00305	MRTO4	+	TRUE	AluSz	SINE,Alu
chr1	205687365	C	T	0.00071	NUCKS1	-	FALSE	(T)n	SINE,Alu
chr2	68402360	A	G	0.00309	PNO1	+	FALSE
chr6	31324705	A	C	0.00179		.	FALSE
chr1	10517635	T	C	0.00124		.	FALSE	AluSx1	SINE,Alu
chr12	12967264	C	G	0.00781	DDX47	+	FALSE
chr5	17276088	C	A	0.00171	BASP1	+	FALSE	(TC)n	SINE,Alu
chr1	184661942	T	G	0.00343	EDEM3	-	FALSE
chr1	85785556	A	C	0.00034	DDAH1	-	FALSE
chr1	36068276	T	C	2.73596E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr1	101444069	C	A	0.00962	SLC30A7	+	FALSE	MIR3	SINE,Alu
chr4	165998226	T	C	0.00754	TMEM192	-	TRUE	AluSx	SINE,Alu
chr1	28826190	A	G	0.00233	PHACTR4	+	TRUE	AluJb	SINE,Alu
chr3	12882839	C	G	0.00118	RPL32	-	FALSE
chr1	38280010	C	T	0.00990	MTF1	-	FALSE
chr3	119212009	G	A	0.00241	POGLUT1	+	FALSE
chr8	145159706	C	G	0.00561	MAF1	+	FALSE
chr8	144940798	T	C	0.00255	EPPK1	-	FALSE
chr17	16344882	T	G	0.00060	LRRC75A-AS1	+	FALSE	AluJb	SINE,Alu
chr1	179042719	A	G	5.24590E-05	FAM20B	+	TRUE	AluSx1	SINE,Alu
chr6	150045919	T	C	0.00206	NUP43	-	TRUE	AluSq	SINE,Alu
chr2	24223353	A	G	0.00083	UBXN2A	+	TRUE	AluSc	SINE,Alu
chrX	3526616	G	A	0.00971	PRKX	-	FALSE
chr2	234749258	T	C	0.00710	HJURP	-	FALSE
chr1	182569291	A	T	0.00979	RGS16	-	FALSE
chr1	109795026	T	C	0.00355	CELSR2	+	FALSE
chr5	96129512	A	G	0.00997	ERAP1	-	FALSE
chr2	198572076	A	C	0.00532	MARS2	+	FALSE
chr1	211921702	T	C	0.00014	LPGAT1	-	FALSE
chr1	28864731	A	G	0.00477	RCC1	+	FALSE
chr5	79279309	T	G	0.00167	MTX3	-	FALSE
chr13	73651653	G	T	0.00532	KLF5	+	FALSE
chr1	160966299	T	C	1.46976E-05	F11R	-	TRUE	AluSg	SINE,Alu
chr1	28825331	A	G	0.00051	PHACTR4	+	TRUE	AluSg	SINE,Alu
chr6	52267967	A	C	0.00424	PAQR8	+	FALSE
chr1	45975670	A	G	8.16323E-05	MMACHC	+	TRUE	AluSx4	SINE,Alu
chr1	20519965	G	T	0.00011	UBXN10	+	FALSE
chr1	10521172	T	C	1.01590E-06	DFFA	-	TRUE	AluY	SINE,Alu
chr4	843695	A	G	0.00602	GAK	-	FALSE
chr1	154919080	C	T	0.00376	PBXIP1	-	FALSE
chr1	1447756	G	C	0.00343	ATAD3A	+	FALSE
chr2	187544218	T	G	0.00796	ITGAV	+	FALSE
chr7	94060361	C	T	2.02320E-06	COL1A2	+	FALSE
chr1	160967833	T	C	0.00717	F11R	-	TRUE	AluSp	SINE,Alu
chr1	75190452	C	T	4.33030E-05	CRYZ	-	FALSE
chr2	37331560	T	C	6.28398E-05		.	FALSE	AluJb	SINE,Alu
chr1	110949720	C	T	0.00666	LAMTOR5	-	FALSE	L1ME4b	SINE,Alu
chr9	133579674	A	G	0.00018	EXOSC2	+	TRUE	AluSx3	SINE,Alu
chr1	145513031	A	G	0.00705	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluSz6	SINE,Alu
chr1	110604747	G	A	0.00739	ALX3	-	FALSE
chr1	43394612	T	C	0.00154	SLC2A1	-	FALSE
chr1	6283264	T	C	0.00287	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	24862649	A	G	0.00074	RCAN3	+	FALSE
chr1	204521576	A	G	0.00021	MDM4	+	TRUE	AluSg	SINE,Alu
chr4	110635486	A	G	0.00021	PLA2G12A	-	FALSE
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr1	53712570	A	C	0.00277	LRP8	-	FALSE	(CA)n	SINE,Alu
chr1	85718132	C	A	0.00738	C1orf52	-	FALSE
chr2	102484482	G	A	0.00213	MAP4K4	+	FALSE
chr5	125961426	A	G	0.00434	PHAX	+	TRUE	AluSz6	SINE,Alu
chr1	78414308	T	C	0.00024	FUBP1	-	FALSE
chr1	92976590	G	A	0.00629	EVI5	-	FALSE
chr1	148003749	T	C	0.00050	NBPF8	-	TRUE	L1MC4	SINE,Alu
chr2	69688917	T	C	0.00254	AAK1	-	TRUE	AluSq2	SINE,Alu
chr1	16889414	T	C	0.00858	NBPF1	-	TRUE	L1MC4	SINE,Alu
chr3	10193475	A	G	0.00110	VHL	+	TRUE	AluJr	SINE,Alu
chr1	9331255	A	G	0.00992	H6PD	+	TRUE	AluSx	SINE,Alu
chr1	19542401	T	C	0.00077	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr15	44055281	T	C	0.00580	PDIA3	+	FALSE
chr7	158590740	A	T	0.00211	ESYT2	-	FALSE
chr7	100804430	C	T	0.00629	AP1S1	+	FALSE
chr7	100860467	C	G	0.00267	PLOD3	-	FALSE
chr7	2767939	T	C	0.00028	AMZ1,GNA12	+,-	FALSE
chr1	179044100	A	G	0.00219	FAM20B	+	TRUE	AluSx	SINE,Alu
chr1	145688943	A	G	0.00492	NBPF20,NBPF10,RNF115	+	TRUE	AluSc8	SINE,Alu
chr1	6585215	C	T	0.00286	NOL9	-	FALSE	FAM	SINE,Alu
chr1	225683184	G	T	0.00741	ENAH	-	FALSE
chr1	145292925	C	T	0.00817	NBPF20	+	FALSE
chr1	204521724	A	G	0.00851	MDM4	+	TRUE	AluSg	SINE,Alu
chr6	43747963	G	C	0.00274	VEGFA	+	FALSE
chr4	7765043	G	A	0.00071	AFAP1,AFAP1-AS1	+,-	FALSE
chr1	145511998	A	G	0.00675	NBPF20,NBPF10,RBM8A,GNRHR2	+,-	FALSE	AluY	SINE,Alu
chr7	20178490	T	C	0.00028	MACC1,LOC101927668	-	TRUE	AluY	SINE,Alu
chr1	31732514	C	T	0.00588	SNRNP40	-	FALSE
chr2	37330606	T	C	0.00136		.	FALSE	AluSq2	SINE,Alu
chr16	15794312	C	T	0.00796	NDE1	+	FALSE	AluSz	SINE,Alu
chr1	10519932	T	C	0.00323		.	FALSE	AluJr	SINE,Alu
chr3	58304244	G	A	0.00560	RPP14	+	FALSE	AluSz	SINE,Alu
chr1	10042987	A	G	0.00149	NMNAT1	+	TRUE	AluSc	SINE,Alu
chr2	131906031	C	T	0.00374	PLEKHB2	+	FALSE
chr17	49041866	T	C	0.00153	SPAG9	-	TRUE	AluSx	SINE,Alu
chrX	37699364	C	G	0.00695	DYNLT3	-	FALSE
chr19	13883927	A	G	0.00143	MRI1	+	TRUE	AluSz	SINE,Alu
chr3	73115126	A	T	0.00228	PPP4R2	+	FALSE
chrX	123046892	A	G	0.00064	XIAP	+	TRUE	AluSx	SINE,Alu
chr2	8823951	A	T	0.00251	ID2	+	FALSE
chr1	10517998	T	C	0.00821		.	FALSE	AluJr	SINE,Alu
chr2	37327676	T	C	0.00462		.	FALSE
chr20	46284868	A	T	0.00681	NCOA3	+	FALSE
chr5	180682608	C	A	0.00144	CTC-338M12.4	+	FALSE
chr1	179077613	T	C	0.00731	ABL2	-	FALSE
chr2	54888359	A	G	3.08576E-05	SPTBN1	+	FALSE
chr12	125511952	A	G	0.00138	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	193055149	A	G	0.00589	TROVE2	+	FALSE
chr2	3609064	G	A	0.00212	RNASEH1-AS1	+	FALSE	MER33	SINE,Alu
chr1	148556087	G	C	0.00486		.	FALSE
chr16	10625075	T	C	2.22045E-15	EMP2	-	TRUE	AluSx3	SINE,Alu
chr1	179042905	A	G	0.00972	FAM20B	+	TRUE
chr15	90819594	A	G	9.20455E-05		.	FALSE	AluSx	SINE,Alu
chr19	42376710	A	G	1.82395E-05		.	FALSE	AluSp	SINE,Alu
chr1	205759960	C	T	4.24096E-05	SLC41A1	-	FALSE
chr12	56510706	A	G	0.00053	RPL41	+	FALSE
chr1	12040479	T	C	0.00505	MFN2	+	FALSE
chr1	6283430	T	C	0.00751	ICMT	-	TRUE	AluSx3	SINE,Alu
chr1	27190857	C	T	0.00160	SFN	+	FALSE
chr1	179326278	A	G	0.00379	SOAT1	+	TRUE
chr3	183901281	G	A	4.84515E-09	AP2M1	+	FALSE
chr1	6279957	A	G	0.00814	RNF207	+	TRUE	AluSp	SINE,Alu
chr1	148556784	G	A	0.00100		.	FALSE
chr5	96372165	G	A	0.00149		.	FALSE
chr2	37327685	T	C	0.00057		.	FALSE
chr5	34906692	T	C	0.00021	RAD1	-	TRUE	AluJo	SINE,Alu
chr1	33148365	G	C	0.00062	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr17	53470462	C	T	0.00230	MMD	-	FALSE
chr1	10517659	T	C	0.00679		.	FALSE	AluSx1	SINE,Alu
chr1	109605648	A	G	0.00033		.	FALSE	AluY	SINE,Alu
chr1	156613401	T	C	5.47226E-05	BCAN	+	FALSE
chr5	122165482	C	T	0.00367	SNX2	+	FALSE	(AC)n	SINE,Alu
chr1	148010972	A	G	0.00068	NBPF8	-	FALSE
chr4	103809324	A	C	0.00658	CISD2,SLC9B1	+,-	FALSE
chr3	10193683	T	G	0.00681	VHL	+	FALSE	AluJr	SINE,Alu
chr2	74442407	A	G	0.00384	MTHFD2	+	FALSE
chr5	130537666	A	G	0.00329	LYRM7	+	TRUE	AluJb	SINE,Alu
chr2	203744629	T	C	0.00363		.	FALSE	AluSx1	SINE,Alu
chr1	246931057	A	G	0.00048	SCCPDH	+	FALSE
chr1	27678712	A	G	0.00215	SYTL1	+	TRUE	AluSx1	SINE,Alu
chr1	15899345	T	C	0.00300	AGMAT	-	TRUE	AluSx3	SINE,Alu
chr1	146650542	A	G	0.00017	PDIA3P1	+	FALSE
chr3	5222483	T	G	1.83612E-05	ARL8B	+	FALSE
chr1	36068370	T	C	3.60077E-09	PSMB2	-	TRUE	AluSc	SINE,Alu
chr3	10192704	A	G	0.00402	VHL	+	TRUE	AluSx1	SINE,Alu
chr1	1650807	T	C	0.00104	CDK11B,CDK11A	-	FALSE
chr1	160967855	T	C	0.00042	F11R	-	TRUE	AluSp	SINE,Alu
chr6	47592459	A	G	0.00789	CD2AP	+	FALSE
chr17	5288081	C	T	0.00518	RABEP1	+	FALSE
chr1	236208773	C	T	0.00722	NID1	-	FALSE
chr2	109301115	T	A	0.00150	LIMS1	+	FALSE
chr3	101542436	A	G	0.00023	NXPE3	+	TRUE	AluJr	SINE,Alu
chr1	9162243	T	C	0.00031		.	FALSE	AluSx	SINE,Alu
chr1	28661653	A	G	0.00053	MED18	+	TRUE	AluSg	SINE,Alu
chr3	88199298	T	C	0.00048	C3orf38	+	FALSE
chr2	9629414	A	G	0.00539	ADAM17	-	FALSE	AluY	SINE,Alu
chr1	27992825	G	A	0.00192	IFI6	-	FALSE
chr1	160967856	T	C	0.00027	F11R	-	TRUE	AluSp	SINE,Alu
chr4	17802819	T	C	0.00112	DCAF16	-	TRUE	AluSz	SINE,Alu
chr8	38829416	A	G	0.00695	PLEKHA2	+	TRUE	AluYc	SINE,Alu
chr5	70503890	A	T	0.00188		.	FALSE
chr14	20923558	A	C	0.00373	APEX1	+	FALSE
chr1	8045340	C	A	0.00059	PARK7	+	FALSE
chr9	125609943	A	G	0.00247		.	FALSE
chr1	145281633	C	A	0.00022	NBPF20,NOTCH2NL	+	FALSE
chr3	98518158	A	T	0.00960	DCBLD2	-	FALSE
chr1	20982216	T	A	0.00065	DDOST	-	FALSE
chr1	225977968	C	T	0.00490	SRP9	+	FALSE
chr1	65692498	T	C	0.00356	AK4	+	FALSE	(T)n	SINE,Alu
chr1	16901668	T	C	0.00421	NBPF1	-	FALSE
chr16	80636805	T	G	0.00766	CDYL2	-	FALSE
chr1	211921723	A	G	4.36683E-06	LPGAT1	-	FALSE
chr5	180262080	A	G	0.00259	LINC00847	+	TRUE	MLT2B3	SINE,Alu
chr1	78187733	G	A	0.00388	USP33	-	FALSE
chr1	67451522	A	T	0.00883	MIER1	+	FALSE
chr1	15990912	T	C	0.00133		.	FALSE	AluSx3	SINE,Alu
chr1	9163334	T	C	0.00632		.	FALSE	AluSp	SINE,Alu
chr1	900720	A	T	0.00065	KLHL17	+	FALSE	(TTTA)n	SINE,Alu
chr8	8099397	T	C	0.00975	FAM86B3P	+	FALSE
chr3	75779650	G	C	0.00116	ZNF717	-	FALSE
chr15	41590288	G	T	0.00349	OIP5-AS1	+	FALSE
chr1	1252513	T	C	0.00670	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr2	10270775	G	T	0.00953	RRM2	+	FALSE	AluSx	SINE,Alu
chr1	894375	G	A	0.00052	NOC2L	-	FALSE
chr2	37328016	T	C	0.00473		.	FALSE
chr17	4929000	A	G	0.00214	KIF1C	+	TRUE	AluY	SINE,Alu
chr1	206566948	G	A	0.00879	SRGAP2	+	FALSE
chr12	125511942	A	G	0.00015	THRIL	-	FALSE	AluSx1	SINE,Alu
chr1	85785548	C	T	0.00353	DDAH1	-	FALSE
chr1	16890644	C	T	0.00439	NBPF1	-	FALSE

RBP	CNBP
Knock-Method	siRNA
RBP Family	zf-CCHC
Biosample Name	T47D
Tissue Type	Breast
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE79586
Platform	GPL167891
Pubmed ID	28813674

CNBP - Target Gene Network