RBPFunction

Differential Variants in RNA (DVRs)

Chrom	Site	Ref_allele	Alt_allele	Pvalue	Genename	Strand	KnownRNAediting	RepeatName	RepeatFamily
chr5	175934037	C	A	0.00182	FAF2	+	FALSE	A-rich	SINE,Alu
chr3	179117128	T	C	0.00239	GNB4	-	TRUE	AluSz	SINE,Alu
chr10	120920588	T	C	0.00304	SFXN4	-	FALSE
chr2	204301760	C	T	0.00313	RAPH1	-	FALSE
chr7	6064010	C	A	0.00304	EIF2AK1	-	FALSE
chr1	19232017	T	G	0.00723	IFFO2	-	FALSE
chr10	61548856	T	C	0.00067	CCDC6	-	FALSE
chr1	36068369	T	C	5.31121E-05	PSMB2	-	TRUE	AluSc	SINE,Alu
chr19	53571306	T	C	0.00481	ZNF160	-	FALSE
chr1	70833400	C	T	0.00224	HHLA3	+	FALSE	LTR7	SINE,Alu
chr17	28506279	G	A	0.00634	NSRP1	+	FALSE
chr4	113152490	G	A	0.00221		.	FALSE
chr4	177252238	A	G	0.00061	SPCS3	+	TRUE
chr1	86049389	T	A	0.00420	CYR61	+	FALSE
chr6	160526910	A	T	0.00672	IGF2R	+	FALSE
chr1	171509327	G	A	0.00110	PRRC2C	+	FALSE
chr6	150045919	T	C	0.00206	NUP43	-	TRUE	AluSq	SINE,Alu
chr1	27426756	A	G	0.00384	SLC9A1	-	FALSE
chr1	16933629	A	G	0.00299	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	11347152	A	T	0.00295	UBIAD1	+	FALSE
chr1	65897981	G	A	0.00025	LEPR,LEPROT	+	FALSE
chr1	10043363	A	G	0.00509	NMNAT1	+	TRUE	AluSx3	SINE,Alu
chr1	193054154	G	A	0.00757	TROVE2	+	FALSE
chr5	122359498	A	C	0.00038	PPIC	-	FALSE	(AC)n	SINE,Alu
chr1	154317153	C	T	0.00567	ATP8B2	+	FALSE
chr1	10421878	A	G	7.26627E-05	KIF1B	+	FALSE
chr1	160967754	T	C	0.00563	F11R	-	TRUE	(T)n	SINE,Alu
chr15	63356574	G	A	0.00845	TPM1	+	FALSE
chr1	205056476	T	C	0.00096	RBBP5	-	FALSE	AluSx	SINE,Alu
chr7	100031498	T	C	0.00110	MEPCE	+	FALSE
chr1	15909744	C	T	0.00100	AGMAT	-	FALSE
chr1	225678219	T	C	0.00080	ENAH	-	TRUE	AluSx	SINE,Alu
chr1	85733095	G	A	0.00651	BCL10	-	FALSE
chr19	42376710	A	G	1.82395E-05		.	FALSE	AluSp	SINE,Alu
chr1	145369709	A	G	0.00019	NBPF20,NBPF10	+	TRUE	L1MC4	SINE,Alu
chr1	3545204	C	G	0.00829	TPRG1L	+	FALSE
chr1	54691921	G	A	0.00010	SSBP3	-	FALSE
chr1	53288870	A	G	0.00184	ZYG11B	+	TRUE	AluJo	SINE,Alu
chr3	183900836	G	A	2.54977E-05	AP2M1	+	FALSE
chr1	145441838	C	G	0.00790	NBPF20,NBPF10,TXNIP	+	FALSE
chr1	6282361	T	C	0.00634	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	89479063	G	A	0.00076	GBP3	-	FALSE
chr1	150703860	T	C	0.00222	CTSS	-	TRUE	AluSx	SINE,Alu
chr1	67451522	A	T	0.00883	MIER1	+	FALSE
chr8	27661036	C	A	0.00339	ESCO2	+	FALSE	A-rich	SINE,Alu
chr17	49041732	T	C	0.00135	SPAG9	-	TRUE	AluSx	SINE,Alu
chr1	67874697	T	C	0.00022	SERBP1	-	TRUE	AluSx3	SINE,Alu
chr2	136542434	A	T	0.00606	UBXN4	+	FALSE	L1ME4b	SINE,Alu
chr1	10517653	T	C	0.00475		.	FALSE	AluSx1	SINE,Alu
chr1	6948204	T	C	4.22429E-07	CAMTA1	+	FALSE	L2a	SINE,Alu
chr4	71683841	T	C	8.62096E-05	GRSF1	-	TRUE	AluSz	SINE,Alu
chr1	203822584	T	C	5.41257E-07	ZC3H11A	+	FALSE
chr1	11979809	A	C	0.00744	KIAA2013	-	FALSE
chr2	54014303	A	G	0.00901	GPR75-ASB3,ERLEC1	+,-	FALSE
chr12	990912	A	C	0.00244	WNK1	+	FALSE
chr2	47085954	C	T	0.00805	LINC01119	+	FALSE
chr1	9163400	T	C	0.00726		.	FALSE	AluSp	SINE,Alu
chr1	47142539	T	A	0.00066	EFCAB14-AS1,EFCAB14	+,-	FALSE
chr1	11084103	T	A	0.00162	TARDBP	+	FALSE
chr4	67846	C	A	0.00573	ZNF718,ZNF595	+	FALSE	AluYk3	SINE,Alu
chr1	1447756	G	C	0.00354	ATAD3A	+	FALSE
chr1	193054576	T	C	0.00068	TROVE2	+	FALSE	(ATTTT)n	SINE,Alu
chr1	150190851	G	T	0.00339	ANP32E	-	FALSE
chr1	85785550	C	A	0.00156	DDAH1	-	FALSE
chr1	16133914	T	C	0.00156	UQCRHL	-	TRUE
chr5	41917695	C	T	0.00019	C5orf51	+	FALSE
chr1	6283550	A	T	0.00225	ICMT	-	FALSE
chr1	67874849	T	C	7.36358E-05	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	161559407	A	G	0.00376	FCGR2C	+	FALSE
chr1	36534784	A	G	0.00369		.	FALSE	AluJo	SINE,Alu
chr2	37333924	T	C	0.00298	EIF2AK2	-	FALSE	AluSz	SINE,Alu
chr3	45721934	A	G	0.00011	LIMD1,LIMD1-AS1	+,-	FALSE	AluJb	SINE,Alu
chr12	98942621	A	G	4.05531E-12	TMPO	+	TRUE	AluSc	SINE,Alu
chr19	59095469	A	G	5.44182E-05	CENPBD1P1	+	TRUE	AluJb	SINE,Alu
chr16	57505635	G	T	0.00974	POLR2C	+	FALSE
chr1	6282400	T	C	0.00132	ICMT	-	TRUE	AluSz	SINE,Alu
chr14	74526945	T	C	2.53258E-07	BBOF1,ALDH6A1	+,-	FALSE	AluJo	SINE,Alu
chr1	67874849	T	C	0.00266	SERBP1	-	TRUE	AluSx	SINE,Alu
chr1	86049390	A	G	0.00918	CYR61	+	FALSE
chr2	24224134	A	G	0.00333		.	FALSE	AluSp	SINE,Alu
chr1	11298093	C	T	1.54321E-14	MTOR	-	FALSE
chr1	2160436	C	T	0.00488	SKI	+	FALSE	(CGC)n	SINE,Alu
chr1	27204516	T	C	0.00028		.	FALSE	AluSg7	SINE,Alu
chr1	28087457	G	T	0.00178	FAM76A	+	FALSE	(T)n	SINE,Alu
chr2	113334414	A	G	0.00281	POLR1B	+	TRUE	AluSz	SINE,Alu
chr2	37328013	T	C	1.05952E-05		.	FALSE
chr1	114938105	T	A	0.00430	TRIM33	-	FALSE
chr8	48890288	A	G	0.00210	MCM4	+	TRUE	AluJb	SINE,Alu
chr3	45960558	C	T	6.37727E-08	FYCO1	-	FALSE
chr7	65619242	A	G	0.00545	CRCP	+	TRUE	AluSz6	SINE,Alu
chr1	65692499	C	T	0.00235	AK4	+	FALSE	(T)n	SINE,Alu
chr2	242173247	G	A	0.00345	HDLBP	-	FALSE
chr1	40219280	T	C	8.82951E-05	PPIE	+	FALSE
chr3	40503561	A	T	0.00012	RPL14	+	FALSE
chr1	1252221	T	C	0.00186	CPSF3L	-	TRUE	AluSx	SINE,Alu
chr3	45722396	A	G	0.00337	LIMD1,LIMD1-AS1	+,-	FALSE	AluSz	SINE,Alu
chr3	57612623	T	C	3.38108E-06	DENND6A,PDE12	+,-	FALSE
chr1	220154768	C	T	0.00067	RNU5F-1,EPRS	+,-	FALSE
chr1	19542401	T	C	0.00010	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr2	27293351	C	T	0.00314	AGBL5,OST4	+,-	FALSE
chr2	74442550	A	T	0.00826		.	FALSE
chr1	36770605	C	T	0.00971	THRAP3	+	FALSE	(T)n	SINE,Alu
chr1	19595137	C	T	0.00085	AKR7L	-	FALSE
chr19	19793876	A	G	0.00080	ZNF101	+	TRUE	AluSc8	SINE,Alu
chr1	26138325	G	A	0.00245	SEPN1	+	FALSE
chr1	19578576	G	A	0.00347	MRTO4	+	FALSE
chr1	11780004	G	T	0.00216	DRAXIN	+	FALSE
chr3	57612973	T	C	0.00135	DENND6A,PDE12	+,-	FALSE	AluSz	SINE,Alu
chr1	16913677	T	C	0.00638	NBPF1	-	FALSE
chr5	149829071	T	C	0.00407	RPS14	-	FALSE
chr1	205738843	C	T	0.00072	RAB29	-	FALSE	AluSz6	SINE,Alu
chr1	142449	G	A	0.00073		.	FALSE	MIRb	SINE,Alu
chr1	3730332	T	C	0.00025	CEP104	-	TRUE	AluSx3	SINE,Alu
chr1	160231113	C	T	0.00204	DCAF8	-	FALSE
chr2	227660628	T	G	0.00025	IRS1	-	FALSE
chr17	65335459	T	C	5.16289E-08	PSMD12	-	TRUE	AluSx	SINE,Alu
chr1	26755303	A	G	0.00129	LIN28A	+	TRUE	AluSx1	SINE,Alu
chr1	26144435	C	G	0.00129	SEPN1	+	FALSE
chr12	125267857	T	C	0.00702	SCARB1	-	TRUE	FRAM	SINE,Alu
chr1	36770045	T	C	0.00488	THRAP3	+	FALSE
chr1	6159719	C	T	4.79205E-09	KCNAB2	+	FALSE
chr4	2940265	T	C	0.00413	NOP14-AS1,NOP14	+,-	FALSE	AluJo	SINE,Alu
chr1	32742441	G	A	2.50972E-10	LCK	+	FALSE
chr19	21304019	A	G	0.00111	ZNF714	+	TRUE	AluY	SINE,Alu
chr5	35064460	G	C	0.00920	PRLR	-	FALSE
chr1	12677547	G	A	0.00015	DHRS3	-	FALSE	(A)n	SINE,Alu
chr1	109239334	A	T	0.00035	PRPF38B	+	FALSE
chr1	40537941	A	C	0.00216	CAP1	+	FALSE	(A)n	SINE,Alu
chr1	145689566	A	G	0.00331	NBPF20,NBPF10	+	TRUE	AluSg	SINE,Alu
chr1	11979815	A	C	0.00274	KIAA2013	-	FALSE
chr10	60047612	A	G	0.00015	CISD1	+	FALSE	(A)n	SINE,Alu
chr1	35652608	A	G	0.00026	SFPQ	-	FALSE
chr2	206862015	G	A	0.00368	INO80D	-	FALSE
chr5	159492107	A	T	0.00332	TTC1	+	FALSE
chr7	65992794	T	C	0.00820		.	FALSE	AluJr	SINE,Alu
chr1	38326704	T	C	0.00328	INPP5B	-	TRUE	AluJr	SINE,Alu
chr1	1252510	T	C	1.62601E-05	CPSF3L	-	TRUE	AluSp	SINE,Alu
chr1	121133995	G	C	0.00575	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr1	19542458	T	C	7.14858E-05	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr1	16932429	C	G	0.00221	NBPF1	-	FALSE	L1MC2	SINE,Alu
chr13	31033317	C	T	0.00254	HMGB1	-	FALSE
chr1	6282401	T	C	0.00806	ICMT	-	TRUE	AluSz	SINE,Alu
chr1	11084103	T	A	0.00146	TARDBP	+	FALSE
chr1	19586501	A	G	0.00119	MRTO4	+	TRUE	AluSz	SINE,Alu
chr5	149829075	A	G	0.00277	RPS14	-	FALSE
chr1	33071096	A	G	0.00139	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr3	58304244	G	A	0.00560	RPP14	+	FALSE	AluSz	SINE,Alu
chr4	39550977	T	C	3.35724E-05	UGDH-AS1,SMIM14	+,-	FALSE	AluSz	SINE,Alu
chr16	10625320	T	C	0.00923	EMP2	-	TRUE	AluSx	SINE,Alu
chr5	61683960	A	G	0.00491		.	FALSE
chr1	150937963	A	G	0.00658	CERS2	-	FALSE	G-rich	SINE,Alu
chr2	206981856	T	C	0.00174		.	FALSE	AluJb	SINE,Alu
chr1	79356400	C	T	0.00714	ADGRL4	-	FALSE
chr1	19586501	A	G	0.00055	MRTO4	+	TRUE	AluSz	SINE,Alu
chr5	149763305	A	G	0.00640	TCOF1	+	FALSE
chr5	118173627	T	C	0.00075	DTWD2	-	TRUE
chr1	24862643	T	G	0.00079	RCAN3	+	FALSE
chr1	19543459	T	C	0.00074	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr4	2940165	T	C	0.00201	NOP14-AS1,NOP14	+,-	FALSE	AluSp	SINE,Alu
chr1	1419700	A	G	0.00671	ATAD3B	+	TRUE	AluYk2	SINE,Alu
chr1	16933629	A	G	0.00310	NBPF1	-	FALSE	GA-rich	SINE,Alu
chr1	15992470	G	A	0.00605		.	FALSE
chr2	206987629	T	C	0.00491		.	FALSE	AluJb	SINE,Alu
chr9	19376246	A	T	0.00298		.	FALSE
chr3	57612180	T	C	0.00018	DENND6A,PDE12	+,-	FALSE	AluSp	SINE,Alu
chr2	99772813	A	G	0.00670	LIPT1	+	TRUE	AluSx1	SINE,Alu
chr1	109181308	T	A	0.00756	FAM102B	+	FALSE
chr9	137330716	A	C	0.00058	RXRA	+	FALSE
chr2	47562582	G	A	0.00484	LOC101927043	-	FALSE	BC200	SINE,Alu
chr10	22825288	G	A	0.00051	PIP4K2A	-	FALSE
chr1	19543465	T	C	0.00709	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr1	158066834	A	G	0.00609	KIRREL	+	FALSE
chr3	14986133	T	C	1.90274E-11	FGD5-AS1	-	TRUE	FLAM_C	SINE,Alu
chr1	19542456	T	C	0.00186	LOC101927895,EMC1	+,-	FALSE	AluSz	SINE,Alu
chr3	195635455	T	C	0.00158	TNK2	-	FALSE
chr1	46075720	A	G	0.00105	NASP	+	TRUE	AluSx4	SINE,Alu
chr5	151041884	T	A	0.00101	SPARC	-	FALSE
chr2	220404381	A	G	0.00268	CHPF	-	FALSE
chr10	102308801	G	C	0.00127	HIF1AN	+	FALSE	(GT)n	SINE,Alu
chr19	13884096	A	G	0.00049	MRI1	+	TRUE	AluSz	SINE,Alu
chr1	3545198	T	C	3.01160E-05	TPRG1L	+	FALSE
chr1	54692341	T	C	0.00045	SSBP3	-	FALSE	(T)n	SINE,Alu
chr1	33148282	A	G	0.00825	SYNC,RBBP4	+,-	FALSE	AluSg	SINE,Alu
chr1	114940209	G	T	0.00638	TRIM33	-	FALSE	(T)n	SINE,Alu
chr2	132481470	C	T	0.00594	C2orf27A	+	FALSE
chr3	86991598	G	T	0.00179	VGLL3	-	FALSE
chr1	20976589	C	T	0.00407	PINK1,PINK1-AS	+,-	FALSE
chr12	21015760	G	A	0.00758	SLCO1B3	+	FALSE
chr2	85776765	T	C	0.00426	GGCX	-	TRUE	AluSz6	SINE,Alu
chr1	33071146	A	G	0.00899	ZBTB8A	+	TRUE	AluSx1	SINE,Alu
chr3	99515750	A	G	2.61553E-11	MIR548G	-	FALSE
chr4	17802819	T	C	0.00409	DCAF16	-	TRUE	AluSz	SINE,Alu
chr9	68413593	C	A	0.00342		.	FALSE
chr1	121133779	C	G	0.00567	SRGAP2-AS1,SRGAP2B,SRGAP2C	+,-	FALSE	L1MB4	SINE,Alu
chr12	98942644	A	G	0.00133	TMPO	+	TRUE	AluSc	SINE,Alu
chr14	69708241	G	A	0.00748	EXD2	+	FALSE
chr17	12915009	G	A	0.00219	ELAC2	-	FALSE
chr2	29023121	G	T	0.00077	PPP1CB	+	FALSE
chr1	94982784	T	A	0.00179	ABCD3	+	FALSE
chr2	37327662	T	C	9.50751E-10		.	FALSE
chr1	118472402	T	G	0.00342	WDR3	+	FALSE
chr1	43391823	C	T	0.00718	SLC2A1	-	FALSE
chr14	75202950	A	G	0.00307	FCF1	+	TRUE	AluSx	SINE,Alu
chr1	1653046	T	A	0.00217	CDK11B,CDK11A	-	FALSE
chr1	145689611	C	A	0.00142	NBPF20,NBPF10	+	FALSE	AluSg	SINE,Alu
chr1	32799512	A	T	0.00929	MARCKSL1	-	FALSE
chr1	155851620	A	G	0.00066	SYT11	+	TRUE	AluSq2	SINE,Alu
chr1	169293721	G	A	0.00978	NME7	-	FALSE
chr6	29857578	A	G	0.00280		.	FALSE
chr3	197611048	A	G	0.00064		.	FALSE	AluSx1	SINE,Alu
chr1	150771703	T	C	0.00500	CTSK	-	FALSE
chr1	566933	A	G	3.50078E-05		.	FALSE
chr1	109818162	T	C	0.00316	CELSR2	+	FALSE
chr2	206981796	T	C	0.00137		.	FALSE	AluJb	SINE,Alu
chr1	145688664	A	T	0.00081	NBPF20,NBPF10,RNF115	+	FALSE
chr1	15909850	C	G	0.00660	AGMAT	-	FALSE
chr1	154454628	T	C	0.00099	SHE	-	TRUE	AluSq2	SINE,Alu
chr1	179326278	A	G	0.00379	SOAT1	+	TRUE
chr10	15120275	T	C	0.00387	ACBD7	-	TRUE	L1PA7	SINE,Alu
chr1	931939	G	A	0.00428		.	FALSE
chr1	24792617	T	A	0.00553	NIPAL3	+	FALSE	MER90a	SINE,Alu
chr1	1252654	A	G	0.00125	CPSF3L	-	FALSE	AluSp	SINE,Alu
chr1	148004548	T	C	0.00220	NBPF8	-	FALSE
chr12	56510700	G	A	2.03060E-05	RPL41	+	FALSE
chr17	7482018	C	A	9.29146E-05	SENP3-EIF4A1,EIF4A1	+	FALSE
chr1	46075664	A	G	0.00267	NASP	+	TRUE	AluSx4	SINE,Alu
chr1	43748051	A	G	0.00489	C1orf210	-	FALSE	L2c	SINE,Alu
chr2	201842391	T	C	0.00081	FAM126B	-	TRUE	AluJb	SINE,Alu
chr1	26755494	A	G	0.00874	LIN28A	+	TRUE	AluSc	SINE,Alu
chr1	53289860	A	G	0.00119	ZYG11B	+	TRUE	FRAM	SINE,Alu
chr1	10520692	T	C	0.00973	DFFA	-	TRUE	AluSc8	SINE,Alu
chr1	204525672	A	G	0.00375	MDM4	+	TRUE	AluSz	SINE,Alu
chr1	121115958	T	C	0.00818	SRGAP2-AS1,SRGAP2D,SRGAP2B,SRGAP2C	+,-	FALSE
chr1	150208462	A	C	9.89925E-05	ANP32E	-	FALSE
chr1	38158211	C	T	0.00091	CDCA8	+	FALSE
chr1	16529016	C	T	0.00024	ARHGEF19	-	FALSE
chr1	173836602	G	A	0.00886	GAS5	-	FALSE	AluSx	SINE,Alu
chr14	75202512	A	G	0.00053	FCF1	+	TRUE	AluSc	SINE,Alu
chr1	53679610	G	A	0.00084	CPT2	+	FALSE	AluSz	SINE,Alu
chr19	54627915	C	T	0.00015	PRPF31	+	FALSE
chr1	183187603	C	T	0.00357	LAMC2	+	FALSE
chr1	24301900	G	A	2.65815E-05		.	FALSE
chr3	182661952	C	T	0.00438	DCUN1D1	-	FALSE	A-rich	SINE,Alu
chr1	16912029	C	G	0.00268	NBPF1	-	FALSE
chr1	24293612	G	A	0.00366		.	FALSE
chr1	9644562	A	G	0.00337		.	FALSE	AluSx	SINE,Alu
chr1	220232143	T	C	7.81076E-05	RNU5F-1,BPNT1	+,-	FALSE	AluSz	SINE,Alu
chr1	158067059	A	C	0.00655	KIRREL	+	FALSE
chr2	86252043	T	C	0.00909	POLR1A	-	TRUE	AluSq2	SINE,Alu
chr2	37075013	T	A	0.00754	STRN	-	FALSE
chr1	10517691	T	C	9.61087E-05		.	FALSE	AluSx1	SINE,Alu
chr3	63996262	C	T	0.00681	PSMD6-AS2,PSMD6	+,-	FALSE
chr3	15780233	C	T	1.83528E-06	ANKRD28	-	FALSE	MER11B	SINE,Alu
chr11	126147697	G	A	0.00237	FOXRED1	+	FALSE
chr1	949608	G	A	0.00416	ISG15	+	FALSE
chr1	19542631	T	C	0.00741	LOC101927895,EMC1	+,-	FALSE	FRAM	SINE,Alu
chr11	94801635	G	T	0.00844	SRSF8	+	FALSE
chr1	214529740	T	C	0.00356	PTPN14	-	TRUE
chr12	121772025	T	C	0.00562	ANAPC5	-	TRUE	AluJr	SINE,Alu
chr1	19543356	T	C	0.00256	LOC101927895,EMC1	+,-	FALSE	AluJb	SINE,Alu
chr4	4864940	C	T	0.00247	MSX1	+	FALSE
chr2	231032372	A	G	0.00691		.	FALSE	MLT1H	SINE,Alu
chr1	109535088	G	A	0.00353	WDR47	-	FALSE
chr1	53288894	A	G	8.27269E-06	ZYG11B	+	TRUE	AluJo	SINE,Alu

RBP	NOCT
Knock-Method	CRISPR
RBP Family	Exo_endo_phos
Biosample Name	A549
Tissue Type	Lung
Biosample Type	Cell line
# of Control	2
# of Treat	2
Species	Human
Data Source	GEO
Profile ID	GSE123477
Platform	GPL11154
Pubmed ID	31147539

NOCT - Target Gene Network